co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G47430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
2	GO:0018293: protein-FAD linkage	0.00E+00
3	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
4	GO:0032780: negative regulation of ATPase activity	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0010336: gibberellic acid homeostasis	0.00E+00
7	GO:0046294: formaldehyde catabolic process	0.00E+00
8	GO:0046460: neutral lipid biosynthetic process	0.00E+00
9	GO:0009903: chloroplast avoidance movement	3.16E-06
10	GO:0071483: cellular response to blue light	5.77E-05
11	GO:0009902: chloroplast relocation	5.77E-05
12	GO:0009904: chloroplast accumulation movement	9.10E-05
13	GO:0010236: plastoquinone biosynthetic process	9.10E-05
14	GO:0007623: circadian rhythm	2.61E-04
15	GO:0071461: cellular response to redox state	2.97E-04
16	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.97E-04
17	GO:0006835: dicarboxylic acid transport	2.97E-04
18	GO:0051171: regulation of nitrogen compound metabolic process	2.97E-04
19	GO:0010036: response to boron-containing substance	2.97E-04
20	GO:1902265: abscisic acid homeostasis	2.97E-04
21	GO:0010100: negative regulation of photomorphogenesis	3.66E-04
22	GO:0051453: regulation of intracellular pH	5.22E-04
23	GO:0000103: sulfate assimilation	6.09E-04
24	GO:0019388: galactose catabolic process	6.50E-04
25	GO:0006898: receptor-mediated endocytosis	6.50E-04
26	GO:0007154: cell communication	6.50E-04
27	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.50E-04
28	GO:0080183: response to photooxidative stress	6.50E-04
29	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	6.50E-04
30	GO:0043100: pyrimidine nucleobase salvage	6.50E-04
31	GO:0042754: negative regulation of circadian rhythm	6.50E-04
32	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.50E-04
33	GO:0010343: singlet oxygen-mediated programmed cell death	6.50E-04
34	GO:2000030: regulation of response to red or far red light	6.50E-04
35	GO:0080005: photosystem stoichiometry adjustment	6.50E-04
36	GO:1901562: response to paraquat	1.05E-03
37	GO:0071492: cellular response to UV-A	1.05E-03
38	GO:0031022: nuclear migration along microfilament	1.05E-03
39	GO:0019419: sulfate reduction	1.05E-03
40	GO:0009637: response to blue light	1.15E-03
41	GO:0006071: glycerol metabolic process	1.27E-03
42	GO:0009113: purine nucleobase biosynthetic process	1.51E-03
43	GO:0009963: positive regulation of flavonoid biosynthetic process	1.51E-03
44	GO:0010255: glucose mediated signaling pathway	1.51E-03
45	GO:0009590: detection of gravity	1.51E-03
46	GO:2001141: regulation of RNA biosynthetic process	1.51E-03
47	GO:0046713: borate transport	1.51E-03
48	GO:0010371: regulation of gibberellin biosynthetic process	1.51E-03
49	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.51E-03
50	GO:0009647: skotomorphogenesis	1.51E-03
51	GO:0008299: isoprenoid biosynthetic process	1.55E-03
52	GO:0009640: photomorphogenesis	1.58E-03
53	GO:0009649: entrainment of circadian clock	2.02E-03
54	GO:0010021: amylopectin biosynthetic process	2.02E-03
55	GO:0070534: protein K63-linked ubiquitination	2.02E-03
56	GO:0015743: malate transport	2.02E-03
57	GO:0071486: cellular response to high light intensity	2.02E-03
58	GO:0009765: photosynthesis, light harvesting	2.02E-03
59	GO:0071585: detoxification of cadmium ion	2.02E-03
60	GO:0009585: red, far-red light phototransduction	2.31E-03
61	GO:0051603: proteolysis involved in cellular protein catabolic process	2.41E-03
62	GO:0055114: oxidation-reduction process	2.49E-03
63	GO:0006508: proteolysis	2.50E-03
64	GO:0042391: regulation of membrane potential	2.57E-03
65	GO:0016120: carotene biosynthetic process	2.58E-03
66	GO:0046283: anthocyanin-containing compound metabolic process	2.58E-03
67	GO:0000304: response to singlet oxygen	2.58E-03
68	GO:0009117: nucleotide metabolic process	3.19E-03
69	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	3.19E-03
70	GO:0006301: postreplication repair	3.19E-03
71	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.19E-03
72	GO:0006555: methionine metabolic process	3.19E-03
73	GO:0070814: hydrogen sulfide biosynthetic process	3.19E-03
74	GO:0048317: seed morphogenesis	3.19E-03
75	GO:0006796: phosphate-containing compound metabolic process	3.19E-03
76	GO:0019252: starch biosynthetic process	3.20E-03
77	GO:0034389: lipid particle organization	3.84E-03
78	GO:0017148: negative regulation of translation	3.84E-03
79	GO:0010189: vitamin E biosynthetic process	3.84E-03
80	GO:0010019: chloroplast-nucleus signaling pathway	3.84E-03
81	GO:0019509: L-methionine salvage from methylthioadenosine	3.84E-03
82	GO:0080060: integument development	3.84E-03
83	GO:0046686: response to cadmium ion	4.07E-03
84	GO:0009396: folic acid-containing compound biosynthetic process	4.53E-03
85	GO:0050790: regulation of catalytic activity	4.53E-03
86	GO:0045995: regulation of embryonic development	4.53E-03
87	GO:0070370: cellular heat acclimation	4.53E-03
88	GO:0016126: sterol biosynthetic process	4.94E-03
89	GO:0009231: riboflavin biosynthetic process	5.26E-03
90	GO:0005978: glycogen biosynthetic process	5.26E-03
91	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.26E-03
92	GO:0030091: protein repair	5.26E-03
93	GO:0048574: long-day photoperiodism, flowering	6.03E-03
94	GO:0071482: cellular response to light stimulus	6.03E-03
95	GO:0022900: electron transport chain	6.03E-03
96	GO:0015996: chlorophyll catabolic process	6.03E-03
97	GO:0034765: regulation of ion transmembrane transport	6.83E-03
98	GO:0046916: cellular transition metal ion homeostasis	6.83E-03
99	GO:0015780: nucleotide-sugar transport	6.83E-03
100	GO:0009821: alkaloid biosynthetic process	6.83E-03
101	GO:0019432: triglyceride biosynthetic process	6.83E-03
102	GO:0035999: tetrahydrofolate interconversion	7.67E-03
103	GO:0009098: leucine biosynthetic process	7.67E-03
104	GO:0010380: regulation of chlorophyll biosynthetic process	7.67E-03
105	GO:0009753: response to jasmonic acid	7.73E-03
106	GO:0045036: protein targeting to chloroplast	8.55E-03
107	GO:0009641: shade avoidance	8.55E-03
108	GO:0051555: flavonol biosynthetic process	8.55E-03
109	GO:0009970: cellular response to sulfate starvation	8.55E-03
110	GO:0006099: tricarboxylic acid cycle	8.56E-03
111	GO:0008285: negative regulation of cell proliferation	9.46E-03
112	GO:0043085: positive regulation of catalytic activity	9.46E-03
113	GO:0006879: cellular iron ion homeostasis	9.46E-03
114	GO:0006352: DNA-templated transcription, initiation	9.46E-03
115	GO:0018119: peptidyl-cysteine S-nitrosylation	9.46E-03
116	GO:0016485: protein processing	9.46E-03
117	GO:0048229: gametophyte development	9.46E-03
118	GO:0006108: malate metabolic process	1.14E-02
119	GO:0006006: glucose metabolic process	1.14E-02
120	GO:0050826: response to freezing	1.14E-02
121	GO:0009718: anthocyanin-containing compound biosynthetic process	1.14E-02
122	GO:0009767: photosynthetic electron transport chain	1.14E-02
123	GO:0030048: actin filament-based movement	1.14E-02
124	GO:0007015: actin filament organization	1.24E-02
125	GO:0009658: chloroplast organization	1.27E-02
126	GO:0010187: negative regulation of seed germination	1.56E-02
127	GO:0051017: actin filament bundle assembly	1.56E-02
128	GO:0019344: cysteine biosynthetic process	1.56E-02
129	GO:0080167: response to karrikin	1.67E-02
130	GO:0010073: meristem maintenance	1.68E-02
131	GO:0019915: lipid storage	1.79E-02
132	GO:0016226: iron-sulfur cluster assembly	1.91E-02
133	GO:0010227: floral organ abscission	2.03E-02
134	GO:0006012: galactose metabolic process	2.03E-02
135	GO:0009693: ethylene biosynthetic process	2.03E-02
136	GO:0006817: phosphate ion transport	2.16E-02
137	GO:0016117: carotenoid biosynthetic process	2.29E-02
138	GO:0080022: primary root development	2.42E-02
139	GO:0010182: sugar mediated signaling pathway	2.55E-02
140	GO:0006520: cellular amino acid metabolic process	2.55E-02
141	GO:0006814: sodium ion transport	2.68E-02
142	GO:0042752: regulation of circadian rhythm	2.68E-02
143	GO:0009058: biosynthetic process	2.69E-02
144	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.96E-02
145	GO:0019761: glucosinolate biosynthetic process	3.10E-02
146	GO:0005975: carbohydrate metabolic process	3.19E-02
147	GO:1901657: glycosyl compound metabolic process	3.25E-02
148	GO:0030163: protein catabolic process	3.25E-02
149	GO:0006464: cellular protein modification process	3.39E-02
150	GO:0009567: double fertilization forming a zygote and endosperm	3.39E-02
151	GO:0071805: potassium ion transmembrane transport	3.55E-02
152	GO:0010228: vegetative to reproductive phase transition of meristem	3.68E-02
153	GO:0009739: response to gibberellin	3.93E-02
154	GO:0010029: regulation of seed germination	4.00E-02
155	GO:0042128: nitrate assimilation	4.16E-02
156	GO:0010411: xyloglucan metabolic process	4.32E-02
157	GO:0048573: photoperiodism, flowering	4.32E-02
158	GO:0015995: chlorophyll biosynthetic process	4.32E-02
159	GO:0006811: ion transport	4.98E-02
160	GO:0009407: toxin catabolic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
5	GO:0042030: ATPase inhibitor activity	0.00E+00
6	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
9	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
10	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
11	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
12	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
13	GO:0050347: trans-octaprenyltranstransferase activity	4.02E-06
14	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.02E-06
15	GO:0004180: carboxypeptidase activity	1.44E-05
16	GO:0004848: ureidoglycolate hydrolase activity	1.44E-05
17	GO:0008106: alcohol dehydrogenase (NADP+) activity	3.21E-05
18	GO:0000254: C-4 methylsterol oxidase activity	3.21E-05
19	GO:0008236: serine-type peptidase activity	8.41E-05
20	GO:0016491: oxidoreductase activity	2.68E-04
21	GO:0080139: borate efflux transmembrane transporter activity	2.97E-04
22	GO:0016783: sulfurtransferase activity	2.97E-04
23	GO:0010313: phytochrome binding	2.97E-04
24	GO:0004328: formamidase activity	2.97E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.97E-04
26	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.97E-04
27	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.97E-04
28	GO:0046480: galactolipid galactosyltransferase activity	2.97E-04
29	GO:0046906: tetrapyrrole binding	2.97E-04
30	GO:0080079: cellobiose glucosidase activity	2.97E-04
31	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.97E-04
32	GO:0042802: identical protein binding	4.10E-04
33	GO:0000989: transcription factor activity, transcription factor binding	4.41E-04
34	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	6.50E-04
35	GO:0004046: aminoacylase activity	6.50E-04
36	GO:0004614: phosphoglucomutase activity	6.50E-04
37	GO:0004329: formate-tetrahydrofolate ligase activity	6.50E-04
38	GO:0016868: intramolecular transferase activity, phosphotransferases	6.50E-04
39	GO:0043425: bHLH transcription factor binding	6.50E-04
40	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	6.50E-04
41	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.50E-04
42	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	6.50E-04
43	GO:0033201: alpha-1,4-glucan synthase activity	6.50E-04
44	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	6.50E-04
45	GO:0009973: adenylyl-sulfate reductase activity	6.50E-04
46	GO:0004557: alpha-galactosidase activity	1.05E-03
47	GO:0003861: 3-isopropylmalate dehydratase activity	1.05E-03
48	GO:0003935: GTP cyclohydrolase II activity	1.05E-03
49	GO:0004781: sulfate adenylyltransferase (ATP) activity	1.05E-03
50	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.05E-03
51	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.05E-03
52	GO:0004373: glycogen (starch) synthase activity	1.05E-03
53	GO:0004672: protein kinase activity	1.16E-03
54	GO:0004792: thiosulfate sulfurtransferase activity	1.51E-03
55	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.51E-03
56	GO:0046715: borate transmembrane transporter activity	1.51E-03
57	GO:0048027: mRNA 5'-UTR binding	1.51E-03
58	GO:0035529: NADH pyrophosphatase activity	1.51E-03
59	GO:0004185: serine-type carboxypeptidase activity	1.58E-03
60	GO:0009011: starch synthase activity	2.02E-03
61	GO:0001053: plastid sigma factor activity	2.02E-03
62	GO:0016987: sigma factor activity	2.02E-03
63	GO:0005249: voltage-gated potassium channel activity	2.57E-03
64	GO:0030551: cyclic nucleotide binding	2.57E-03
65	GO:0008177: succinate dehydrogenase (ubiquinone) activity	2.58E-03
66	GO:0015301: anion:anion antiporter activity	2.58E-03
67	GO:0005452: inorganic anion exchanger activity	2.58E-03
68	GO:0016788: hydrolase activity, acting on ester bonds	2.85E-03
69	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.19E-03
70	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.19E-03
71	GO:0004709: MAP kinase kinase kinase activity	3.19E-03
72	GO:0000293: ferric-chelate reductase activity	3.19E-03
73	GO:0030060: L-malate dehydrogenase activity	3.84E-03
74	GO:0005261: cation channel activity	3.84E-03
75	GO:0004144: diacylglycerol O-acyltransferase activity	3.84E-03
76	GO:0005242: inward rectifier potassium channel activity	3.84E-03
77	GO:0019899: enzyme binding	4.53E-03
78	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.53E-03
79	GO:0004427: inorganic diphosphatase activity	4.53E-03
80	GO:0016621: cinnamoyl-CoA reductase activity	4.53E-03
81	GO:0015140: malate transmembrane transporter activity	4.53E-03
82	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	5.26E-03
83	GO:0004034: aldose 1-epimerase activity	5.26E-03
84	GO:0004871: signal transducer activity	5.42E-03
85	GO:0046914: transition metal ion binding	6.03E-03
86	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.83E-03
87	GO:0016844: strictosidine synthase activity	7.67E-03
88	GO:0008378: galactosyltransferase activity	1.04E-02
89	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.14E-02
90	GO:0005315: inorganic phosphate transmembrane transporter activity	1.14E-02
91	GO:0031072: heat shock protein binding	1.14E-02
92	GO:0051537: 2 iron, 2 sulfur cluster binding	1.14E-02
93	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.24E-02
94	GO:0030552: cAMP binding	1.34E-02
95	GO:0030553: cGMP binding	1.34E-02
96	GO:0005216: ion channel activity	1.68E-02
97	GO:0004176: ATP-dependent peptidase activity	1.79E-02
98	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.79E-02
99	GO:0052689: carboxylic ester hydrolase activity	1.89E-02
100	GO:0022857: transmembrane transporter activity	1.92E-02
101	GO:0008080: N-acetyltransferase activity	2.55E-02
102	GO:0001085: RNA polymerase II transcription factor binding	2.55E-02
103	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.62E-02
104	GO:0050662: coenzyme binding	2.68E-02
105	GO:0016853: isomerase activity	2.68E-02
106	GO:0048038: quinone binding	2.96E-02
107	GO:0004518: nuclease activity	3.10E-02
108	GO:0004197: cysteine-type endopeptidase activity	3.10E-02
109	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.25E-02
110	GO:0008237: metallopeptidase activity	3.55E-02
111	GO:0008483: transaminase activity	3.55E-02
112	GO:0016413: O-acetyltransferase activity	3.70E-02
113	GO:0016168: chlorophyll binding	4.00E-02
114	GO:0030247: polysaccharide binding	4.32E-02
115	GO:0044212: transcription regulatory region DNA binding	4.65E-02
116	GO:0004222: metalloendopeptidase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009507: chloroplast	1.04E-09
3	GO:0005773: vacuole	1.94E-05
4	GO:0043674: columella	2.97E-04
5	GO:0000152: nuclear ubiquitin ligase complex	2.97E-04
6	GO:0005764: lysosome	1.02E-03
7	GO:0016328: lateral plasma membrane	1.05E-03
8	GO:0009526: plastid envelope	2.02E-03
9	GO:0031372: UBC13-MMS2 complex	2.02E-03
10	GO:0009536: plastid	2.41E-03
11	GO:0009570: chloroplast stroma	3.04E-03
12	GO:0031463: Cul3-RING ubiquitin ligase complex	3.19E-03
13	GO:0009706: chloroplast inner membrane	3.62E-03
14	GO:0031969: chloroplast membrane	3.84E-03
15	GO:0031359: integral component of chloroplast outer membrane	4.53E-03
16	GO:0005623: cell	4.99E-03
17	GO:0031982: vesicle	5.26E-03
18	GO:0009501: amyloplast	5.26E-03
19	GO:0005811: lipid particle	6.03E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.83E-03
21	GO:0016604: nuclear body	7.67E-03
22	GO:0009535: chloroplast thylakoid membrane	8.89E-03
23	GO:0005884: actin filament	9.46E-03
24	GO:0030659: cytoplasmic vesicle membrane	1.24E-02
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.43E-02
26	GO:0042651: thylakoid membrane	1.68E-02
27	GO:0009532: plastid stroma	1.79E-02
28	GO:0005834: heterotrimeric G-protein complex	1.80E-02
29	GO:0009523: photosystem II	2.82E-02
30	GO:0005829: cytosol	2.91E-02
31	GO:0005759: mitochondrial matrix	3.20E-02
32	GO:0010319: stromule	3.55E-02
33	GO:0005887: integral component of plasma membrane	3.97E-02
34	GO:0005667: transcription factor complex	4.16E-02
35	GO:0009707: chloroplast outer membrane	4.65E-02