co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045740: positive regulation of DNA replication	0.00E+00
2	GO:0006720: isoprenoid metabolic process	0.00E+00
3	GO:0048870: cell motility	0.00E+00
4	GO:0015822: ornithine transport	0.00E+00
5	GO:0009583: detection of light stimulus	0.00E+00
6	GO:0046294: formaldehyde catabolic process	0.00E+00
7	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
8	GO:0071000: response to magnetism	0.00E+00
9	GO:0046460: neutral lipid biosynthetic process	0.00E+00
10	GO:0032928: regulation of superoxide anion generation	0.00E+00
11	GO:0036172: thiamine salvage	0.00E+00
12	GO:0046085: adenosine metabolic process	0.00E+00
13	GO:2000779: regulation of double-strand break repair	0.00E+00
14	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
15	GO:0010343: singlet oxygen-mediated programmed cell death	3.13E-06
16	GO:0009229: thiamine diphosphate biosynthetic process	7.32E-05
17	GO:0010117: photoprotection	7.32E-05
18	GO:0046283: anthocyanin-containing compound metabolic process	7.32E-05
19	GO:0009228: thiamine biosynthetic process	1.07E-04
20	GO:0000066: mitochondrial ornithine transport	2.60E-04
21	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.60E-04
22	GO:0097502: mannosylation	2.60E-04
23	GO:0016487: farnesol metabolic process	2.60E-04
24	GO:0016031: tRNA import into mitochondrion	2.60E-04
25	GO:0072387: flavin adenine dinucleotide metabolic process	2.60E-04
26	GO:0016122: xanthophyll metabolic process	5.74E-04
27	GO:1901529: positive regulation of anion channel activity	5.74E-04
28	GO:2000030: regulation of response to red or far red light	5.74E-04
29	GO:0044419: interspecies interaction between organisms	5.74E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	5.74E-04
31	GO:0007163: establishment or maintenance of cell polarity	5.74E-04
32	GO:1902000: homogentisate catabolic process	5.74E-04
33	GO:2000071: regulation of defense response by callose deposition	5.74E-04
34	GO:0006432: phenylalanyl-tRNA aminoacylation	5.74E-04
35	GO:0099402: plant organ development	5.74E-04
36	GO:0006996: organelle organization	5.74E-04
37	GO:0006760: folic acid-containing compound metabolic process	9.31E-04
38	GO:0010351: lithium ion transport	9.31E-04
39	GO:0010476: gibberellin mediated signaling pathway	9.31E-04
40	GO:0010325: raffinose family oligosaccharide biosynthetic process	9.31E-04
41	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	9.31E-04
42	GO:0009072: aromatic amino acid family metabolic process	9.31E-04
43	GO:1902448: positive regulation of shade avoidance	9.31E-04
44	GO:1901672: positive regulation of systemic acquired resistance	9.31E-04
45	GO:0043617: cellular response to sucrose starvation	9.31E-04
46	GO:0071492: cellular response to UV-A	9.31E-04
47	GO:0000162: tryptophan biosynthetic process	1.05E-03
48	GO:2000377: regulation of reactive oxygen species metabolic process	1.17E-03
49	GO:0006572: tyrosine catabolic process	1.33E-03
50	GO:0009399: nitrogen fixation	1.33E-03
51	GO:0009647: skotomorphogenesis	1.33E-03
52	GO:0009963: positive regulation of flavonoid biosynthetic process	1.33E-03
53	GO:1901332: negative regulation of lateral root development	1.33E-03
54	GO:0006516: glycoprotein catabolic process	1.33E-03
55	GO:0009965: leaf morphogenesis	1.44E-03
56	GO:0016226: iron-sulfur cluster assembly	1.54E-03
57	GO:0006542: glutamine biosynthetic process	1.78E-03
58	GO:0009755: hormone-mediated signaling pathway	1.78E-03
59	GO:0071486: cellular response to high light intensity	1.78E-03
60	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.78E-03
61	GO:0009765: photosynthesis, light harvesting	1.78E-03
62	GO:0006221: pyrimidine nucleotide biosynthetic process	1.78E-03
63	GO:0051567: histone H3-K9 methylation	1.78E-03
64	GO:0009649: entrainment of circadian clock	1.78E-03
65	GO:0006749: glutathione metabolic process	1.78E-03
66	GO:1902347: response to strigolactone	1.78E-03
67	GO:0034613: cellular protein localization	1.78E-03
68	GO:0010118: stomatal movement	2.13E-03
69	GO:0000304: response to singlet oxygen	2.27E-03
70	GO:0030041: actin filament polymerization	2.27E-03
71	GO:0016120: carotene biosynthetic process	2.27E-03
72	GO:0006544: glycine metabolic process	2.27E-03
73	GO:0098719: sodium ion import across plasma membrane	2.27E-03
74	GO:0055114: oxidation-reduction process	2.32E-03
75	GO:0009646: response to absence of light	2.47E-03
76	GO:0006563: L-serine metabolic process	2.80E-03
77	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.80E-03
78	GO:0016070: RNA metabolic process	2.80E-03
79	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.80E-03
80	GO:0031053: primary miRNA processing	2.80E-03
81	GO:0045962: positive regulation of development, heterochronic	2.80E-03
82	GO:0060918: auxin transport	2.80E-03
83	GO:1901371: regulation of leaf morphogenesis	2.80E-03
84	GO:0042793: transcription from plastid promoter	2.80E-03
85	GO:0033365: protein localization to organelle	2.80E-03
86	GO:0007035: vacuolar acidification	2.80E-03
87	GO:0009117: nucleotide metabolic process	2.80E-03
88	GO:0006574: valine catabolic process	2.80E-03
89	GO:0016458: gene silencing	2.80E-03
90	GO:0010090: trichome morphogenesis	3.22E-03
91	GO:0048444: floral organ morphogenesis	3.36E-03
92	GO:0010310: regulation of hydrogen peroxide metabolic process	3.36E-03
93	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.36E-03
94	GO:0045926: negative regulation of growth	3.36E-03
95	GO:0034389: lipid particle organization	3.36E-03
96	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.36E-03
97	GO:0007050: cell cycle arrest	3.97E-03
98	GO:0000082: G1/S transition of mitotic cell cycle	3.97E-03
99	GO:0051510: regulation of unidimensional cell growth	3.97E-03
100	GO:0045292: mRNA cis splicing, via spliceosome	4.60E-03
101	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.60E-03
102	GO:0009704: de-etiolation	4.60E-03
103	GO:0000028: ribosomal small subunit assembly	4.60E-03
104	GO:0045010: actin nucleation	4.60E-03
105	GO:0006888: ER to Golgi vesicle-mediated transport	4.80E-03
106	GO:0010100: negative regulation of photomorphogenesis	5.27E-03
107	GO:0006526: arginine biosynthetic process	5.27E-03
108	GO:0010204: defense response signaling pathway, resistance gene-independent	5.27E-03
109	GO:0009056: catabolic process	5.98E-03
110	GO:0000902: cell morphogenesis	5.98E-03
111	GO:0019432: triglyceride biosynthetic process	5.98E-03
112	GO:0010043: response to zinc ion	6.15E-03
113	GO:0048527: lateral root development	6.15E-03
114	GO:0051453: regulation of intracellular pH	6.71E-03
115	GO:1900426: positive regulation of defense response to bacterium	6.71E-03
116	GO:0009638: phototropism	6.71E-03
117	GO:0035999: tetrahydrofolate interconversion	6.71E-03
118	GO:1900865: chloroplast RNA modification	6.71E-03
119	GO:0009641: shade avoidance	7.47E-03
120	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.47E-03
121	GO:0009688: abscisic acid biosynthetic process	7.47E-03
122	GO:0006839: mitochondrial transport	7.69E-03
123	GO:0009682: induced systemic resistance	8.27E-03
124	GO:0006879: cellular iron ion homeostasis	8.27E-03
125	GO:0009640: photomorphogenesis	8.70E-03
126	GO:0045037: protein import into chloroplast stroma	9.09E-03
127	GO:0010075: regulation of meristem growth	9.94E-03
128	GO:0010102: lateral root morphogenesis	9.94E-03
129	GO:0009785: blue light signaling pathway	9.94E-03
130	GO:0048440: carpel development	1.08E-02
131	GO:0009585: red, far-red light phototransduction	1.18E-02
132	GO:0048366: leaf development	1.22E-02
133	GO:0010224: response to UV-B	1.22E-02
134	GO:0006071: glycerol metabolic process	1.27E-02
135	GO:0034976: response to endoplasmic reticulum stress	1.27E-02
136	GO:0006487: protein N-linked glycosylation	1.36E-02
137	GO:0006338: chromatin remodeling	1.36E-02
138	GO:0010431: seed maturation	1.56E-02
139	GO:0006306: DNA methylation	1.56E-02
140	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.67E-02
141	GO:0006730: one-carbon metabolic process	1.67E-02
142	GO:0007005: mitochondrion organization	1.67E-02
143	GO:0006012: galactose metabolic process	1.77E-02
144	GO:0019722: calcium-mediated signaling	1.88E-02
145	GO:0000398: mRNA splicing, via spliceosome	1.94E-02
146	GO:0016117: carotenoid biosynthetic process	1.99E-02
147	GO:0010087: phloem or xylem histogenesis	2.11E-02
148	GO:0015991: ATP hydrolysis coupled proton transport	2.11E-02
149	GO:0080022: primary root development	2.11E-02
150	GO:0010051: xylem and phloem pattern formation	2.11E-02
151	GO:0006281: DNA repair	2.13E-02
152	GO:0010182: sugar mediated signaling pathway	2.22E-02
153	GO:0009741: response to brassinosteroid	2.22E-02
154	GO:0010154: fruit development	2.22E-02
155	GO:0006814: sodium ion transport	2.34E-02
156	GO:0042752: regulation of circadian rhythm	2.34E-02
157	GO:0008152: metabolic process	2.41E-02
158	GO:0009851: auxin biosynthetic process	2.46E-02
159	GO:0048825: cotyledon development	2.46E-02
160	GO:0009749: response to glucose	2.46E-02
161	GO:0008654: phospholipid biosynthetic process	2.46E-02
162	GO:0002229: defense response to oomycetes	2.58E-02
163	GO:0071805: potassium ion transmembrane transport	3.09E-02
164	GO:0007267: cell-cell signaling	3.09E-02
165	GO:0016126: sterol biosynthetic process	3.35E-02
166	GO:0042128: nitrate assimilation	3.63E-02
167	GO:0048573: photoperiodism, flowering	3.77E-02
168	GO:0006950: response to stress	3.77E-02
169	GO:0008219: cell death	4.05E-02
170	GO:0009737: response to abscisic acid	4.05E-02
171	GO:0018298: protein-chromophore linkage	4.05E-02
172	GO:0010311: lateral root formation	4.20E-02
173	GO:0009407: toxin catabolic process	4.34E-02
174	GO:0010218: response to far red light	4.34E-02
175	GO:0009658: chloroplast organization	4.48E-02
176	GO:0010119: regulation of stomatal movement	4.49E-02
177	GO:0009637: response to blue light	4.79E-02
178	GO:0009853: photorespiration	4.79E-02
179	GO:0009867: jasmonic acid mediated signaling pathway	4.79E-02
180	GO:0045087: innate immune response	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
2	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
3	GO:0052670: geraniol kinase activity	0.00E+00
4	GO:0052668: farnesol kinase activity	0.00E+00
5	GO:0009008: DNA-methyltransferase activity	0.00E+00
6	GO:0045436: lycopene beta cyclase activity	0.00E+00
7	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
8	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
9	GO:0052671: geranylgeraniol kinase activity	0.00E+00
10	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
11	GO:0008841: dihydrofolate synthase activity	0.00E+00
12	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
13	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
14	GO:0004334: fumarylacetoacetase activity	0.00E+00
15	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
16	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
17	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
18	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
19	GO:0008170: N-methyltransferase activity	0.00E+00
20	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
21	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	4.61E-05
22	GO:0008143: poly(A) binding	1.93E-04
23	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.60E-04
24	GO:0004560: alpha-L-fucosidase activity	2.60E-04
25	GO:0004048: anthranilate phosphoribosyltransferase activity	2.60E-04
26	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	2.60E-04
27	GO:0019707: protein-cysteine S-acyltransferase activity	2.60E-04
28	GO:0071949: FAD binding	3.65E-04
29	GO:0010331: gibberellin binding	5.74E-04
30	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.74E-04
31	GO:0000064: L-ornithine transmembrane transporter activity	5.74E-04
32	GO:0015929: hexosaminidase activity	5.74E-04
33	GO:0004826: phenylalanine-tRNA ligase activity	5.74E-04
34	GO:0004563: beta-N-acetylhexosaminidase activity	5.74E-04
35	GO:0004046: aminoacylase activity	5.74E-04
36	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.74E-04
37	GO:0016787: hydrolase activity	5.95E-04
38	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	9.31E-04
39	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	9.31E-04
40	GO:0004848: ureidoglycolate hydrolase activity	9.31E-04
41	GO:0032403: protein complex binding	9.31E-04
42	GO:0008649: rRNA methyltransferase activity	9.31E-04
43	GO:0003824: catalytic activity	1.23E-03
44	GO:0000254: C-4 methylsterol oxidase activity	1.33E-03
45	GO:0035529: NADH pyrophosphatase activity	1.33E-03
46	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.33E-03
47	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.33E-03
48	GO:0000339: RNA cap binding	1.33E-03
49	GO:0009882: blue light photoreceptor activity	1.33E-03
50	GO:0042802: identical protein binding	1.53E-03
51	GO:0004834: tryptophan synthase activity	1.78E-03
52	GO:0005319: lipid transporter activity	1.78E-03
53	GO:0016491: oxidoreductase activity	1.84E-03
54	GO:0004356: glutamate-ammonia ligase activity	2.27E-03
55	GO:0016407: acetyltransferase activity	2.27E-03
56	GO:0004372: glycine hydroxymethyltransferase activity	2.27E-03
57	GO:0004605: phosphatidate cytidylyltransferase activity	2.80E-03
58	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.80E-03
59	GO:0015081: sodium ion transmembrane transporter activity	2.80E-03
60	GO:0070300: phosphatidic acid binding	3.36E-03
61	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.36E-03
62	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.36E-03
63	GO:0004144: diacylglycerol O-acyltransferase activity	3.36E-03
64	GO:0016621: cinnamoyl-CoA reductase activity	3.97E-03
65	GO:0008375: acetylglucosaminyltransferase activity	4.56E-03
66	GO:0004034: aldose 1-epimerase activity	4.60E-03
67	GO:0015078: hydrogen ion transmembrane transporter activity	5.27E-03
68	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.98E-03
69	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.98E-03
70	GO:0047617: acyl-CoA hydrolase activity	6.71E-03
71	GO:0008047: enzyme activator activity	7.47E-03
72	GO:0015386: potassium:proton antiporter activity	8.27E-03
73	GO:0046961: proton-transporting ATPase activity, rotational mechanism	8.27E-03
74	GO:0000049: tRNA binding	9.09E-03
75	GO:0043621: protein self-association	9.42E-03
76	GO:0015266: protein channel activity	9.94E-03
77	GO:0051287: NAD binding	1.06E-02
78	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.44E-02
79	GO:0004176: ATP-dependent peptidase activity	1.56E-02
80	GO:0003723: RNA binding	1.59E-02
81	GO:0004386: helicase activity	1.83E-02
82	GO:0003756: protein disulfide isomerase activity	1.88E-02
83	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.16E-02
84	GO:0008080: N-acetyltransferase activity	2.22E-02
85	GO:0030170: pyridoxal phosphate binding	2.33E-02
86	GO:0016853: isomerase activity	2.34E-02
87	GO:0050662: coenzyme binding	2.34E-02
88	GO:0048038: quinone binding	2.58E-02
89	GO:0015385: sodium:proton antiporter activity	2.83E-02
90	GO:0008237: metallopeptidase activity	3.09E-02
91	GO:0016168: chlorophyll binding	3.49E-02
92	GO:0016887: ATPase activity	3.68E-02
93	GO:0004806: triglyceride lipase activity	3.77E-02
94	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.05E-02
95	GO:0005096: GTPase activator activity	4.20E-02
96	GO:0008168: methyltransferase activity	4.31E-02
97	GO:0004222: metalloendopeptidase activity	4.34E-02
98	GO:0016788: hydrolase activity, acting on ester bonds	4.56E-02
99	GO:0005515: protein binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.95E-08
2	GO:0005662: DNA replication factor A complex	2.60E-04
3	GO:0000152: nuclear ubiquitin ligase complex	2.60E-04
4	GO:0043190: ATP-binding cassette (ABC) transporter complex	2.60E-04
5	GO:0005845: mRNA cap binding complex	2.60E-04
6	GO:0016604: nuclear body	4.33E-04
7	GO:0005846: nuclear cap binding complex	5.74E-04
8	GO:0009941: chloroplast envelope	6.42E-04
9	GO:0016605: PML body	9.31E-04
10	GO:0009536: plastid	1.57E-03
11	GO:0009517: PSII associated light-harvesting complex II	1.78E-03
12	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.78E-03
13	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.27E-03
14	GO:0005737: cytoplasm	2.27E-03
15	GO:0000974: Prp19 complex	2.80E-03
16	GO:0032588: trans-Golgi network membrane	2.80E-03
17	GO:0030140: trans-Golgi network transport vesicle	2.80E-03
18	GO:0031209: SCAR complex	2.80E-03
19	GO:0009570: chloroplast stroma	4.28E-03
20	GO:0005811: lipid particle	5.27E-03
21	GO:0009707: chloroplast outer membrane	5.32E-03
22	GO:0005763: mitochondrial small ribosomal subunit	5.98E-03
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.98E-03
24	GO:0071011: precatalytic spliceosome	6.71E-03
25	GO:0005829: cytosol	7.73E-03
26	GO:0071013: catalytic step 2 spliceosome	8.27E-03
27	GO:0009508: plastid chromosome	9.94E-03
28	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.11E-02
29	GO:0005747: mitochondrial respiratory chain complex I	1.44E-02
30	GO:0016607: nuclear speck	1.44E-02
31	GO:0042651: thylakoid membrane	1.46E-02
32	GO:0045271: respiratory chain complex I	1.46E-02
33	GO:0015935: small ribosomal subunit	1.56E-02
34	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.88E-02
35	GO:0005743: mitochondrial inner membrane	1.95E-02
36	GO:0005654: nucleoplasm	2.05E-02
37	GO:0005789: endoplasmic reticulum membrane	2.33E-02
38	GO:0009523: photosystem II	2.46E-02
39	GO:0005759: mitochondrial matrix	2.64E-02
40	GO:0071944: cell periphery	2.83E-02
41	GO:0032580: Golgi cisterna membrane	2.96E-02
42	GO:0009295: nucleoid	3.09E-02
43	GO:0005778: peroxisomal membrane	3.09E-02
44	GO:0016021: integral component of membrane	3.11E-02
45	GO:0005773: vacuole	3.56E-02
46	GO:0005643: nuclear pore	4.05E-02