Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0007141: male meiosis I0.00E+00
2GO:0015812: gamma-aminobutyric acid transport2.64E-05
3GO:0034628: 'de novo' NAD biosynthetic process from aspartate2.64E-05
4GO:0006611: protein export from nucleus6.72E-05
5GO:0051176: positive regulation of sulfur metabolic process1.18E-04
6GO:0000055: ribosomal large subunit export from nucleus1.18E-04
7GO:0046168: glycerol-3-phosphate catabolic process1.18E-04
8GO:0015840: urea transport1.18E-04
9GO:0010031: circumnutation1.76E-04
10GO:0009413: response to flooding1.76E-04
11GO:0006072: glycerol-3-phosphate metabolic process1.76E-04
12GO:0007029: endoplasmic reticulum organization3.07E-04
13GO:0009435: NAD biosynthetic process3.07E-04
14GO:0016131: brassinosteroid metabolic process3.07E-04
15GO:0048232: male gamete generation3.78E-04
16GO:0006796: phosphate-containing compound metabolic process3.78E-04
17GO:0071470: cellular response to osmotic stress4.53E-04
18GO:0009409: response to cold5.23E-04
19GO:0045995: regulation of embryonic development5.30E-04
20GO:0009415: response to water6.10E-04
21GO:0017004: cytochrome complex assembly6.94E-04
22GO:0010208: pollen wall assembly6.94E-04
23GO:0009060: aerobic respiration7.80E-04
24GO:0019432: triglyceride biosynthetic process7.80E-04
25GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.80E-04
26GO:0010629: negative regulation of gene expression9.59E-04
27GO:0051026: chiasma assembly9.59E-04
28GO:0010105: negative regulation of ethylene-activated signaling pathway1.15E-03
29GO:0048440: carpel development1.35E-03
30GO:0007623: circadian rhythm1.38E-03
31GO:0010030: positive regulation of seed germination1.45E-03
32GO:0006071: glycerol metabolic process1.56E-03
33GO:0006833: water transport1.56E-03
34GO:0010468: regulation of gene expression1.63E-03
35GO:0007017: microtubule-based process1.78E-03
36GO:0003333: amino acid transmembrane transport1.90E-03
37GO:0009269: response to desiccation1.90E-03
38GO:0016226: iron-sulfur cluster assembly2.02E-03
39GO:0007131: reciprocal meiotic recombination2.02E-03
40GO:0000413: protein peptidyl-prolyl isomerization2.52E-03
41GO:0048653: anther development2.52E-03
42GO:0071472: cellular response to salt stress2.65E-03
43GO:0042752: regulation of circadian rhythm2.78E-03
44GO:0009749: response to glucose2.91E-03
45GO:0006310: DNA recombination3.47E-03
46GO:0006810: transport3.52E-03
47GO:0010286: heat acclimation3.62E-03
48GO:0010029: regulation of seed germination4.06E-03
49GO:0048481: plant ovule development4.69E-03
50GO:0000160: phosphorelay signal transduction system4.85E-03
51GO:0009873: ethylene-activated signaling pathway4.91E-03
52GO:0009834: plant-type secondary cell wall biogenesis5.02E-03
53GO:0007568: aging5.18E-03
54GO:0009631: cold acclimation5.18E-03
55GO:0009737: response to abscisic acid5.64E-03
56GO:0009908: flower development6.09E-03
57GO:0042542: response to hydrogen peroxide6.39E-03
58GO:0009644: response to high light intensity6.94E-03
59GO:0035556: intracellular signal transduction7.11E-03
60GO:0006260: DNA replication7.50E-03
61GO:0000165: MAPK cascade7.50E-03
62GO:0042538: hyperosmotic salinity response7.69E-03
63GO:0050832: defense response to fungus8.59E-03
64GO:0006457: protein folding8.72E-03
65GO:0006511: ubiquitin-dependent protein catabolic process9.15E-03
66GO:0009624: response to nematode1.03E-02
67GO:0010228: vegetative to reproductive phase transition of meristem1.57E-02
68GO:0005975: carbohydrate metabolic process2.08E-02
69GO:0009723: response to ethylene2.30E-02
70GO:0080167: response to karrikin2.42E-02
71GO:0010200: response to chitin2.48E-02
72GO:0045892: negative regulation of transcription, DNA-templated2.78E-02
73GO:0016042: lipid catabolic process3.13E-02
74GO:0009751: response to salicylic acid3.16E-02
75GO:0009793: embryo development ending in seed dormancy3.17E-02
76GO:0006281: DNA repair3.19E-02
77GO:0016567: protein ubiquitination4.16E-02
78GO:0009651: response to salt stress4.58E-02
79GO:0009738: abscisic acid-activated signaling pathway4.69E-02
80GO:0009555: pollen development4.80E-02
81GO:0009611: response to wounding4.88E-02
RankGO TermAdjusted P value
1GO:0015439: heme-transporting ATPase activity0.00E+00
2GO:0103115: protoheme IX ABC transporter activity0.00E+00
3GO:0008987: quinolinate synthetase A activity0.00E+00
4GO:0015200: methylammonium transmembrane transporter activity2.64E-05
5GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.64E-05
6GO:0080118: brassinosteroid sulfotransferase activity2.64E-05
7GO:0015180: L-alanine transmembrane transporter activity6.72E-05
8GO:1990135: flavonoid sulfotransferase activity6.72E-05
9GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.18E-04
10GO:0043023: ribosomal large subunit binding1.76E-04
11GO:0015189: L-lysine transmembrane transporter activity1.76E-04
12GO:0015181: arginine transmembrane transporter activity1.76E-04
13GO:0008526: phosphatidylinositol transporter activity2.39E-04
14GO:0015204: urea transmembrane transporter activity2.39E-04
15GO:0005313: L-glutamate transmembrane transporter activity2.39E-04
16GO:0016462: pyrophosphatase activity3.78E-04
17GO:0008519: ammonium transmembrane transporter activity3.78E-04
18GO:0004144: diacylglycerol O-acyltransferase activity4.53E-04
19GO:0004427: inorganic diphosphatase activity5.30E-04
20GO:0008047: enzyme activator activity9.59E-04
21GO:0003680: AT DNA binding1.05E-03
22GO:0008146: sulfotransferase activity1.45E-03
23GO:0004707: MAP kinase activity1.90E-03
24GO:0000156: phosphorelay response regulator activity3.33E-03
25GO:0005200: structural constituent of cytoskeleton3.62E-03
26GO:0015250: water channel activity3.91E-03
27GO:0051539: 4 iron, 4 sulfur cluster binding6.04E-03
28GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.31E-03
29GO:0051287: NAD binding7.50E-03
30GO:0015171: amino acid transmembrane transporter activity8.68E-03
31GO:0008026: ATP-dependent helicase activity1.08E-02
32GO:0005515: protein binding1.10E-02
33GO:0015297: antiporter activity1.47E-02
34GO:0005215: transporter activity1.51E-02
35GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.80E-02
36GO:0003700: transcription factor activity, sequence-specific DNA binding1.82E-02
37GO:0004842: ubiquitin-protein transferase activity1.89E-02
38GO:0000287: magnesium ion binding2.05E-02
39GO:0016788: hydrolase activity, acting on ester bonds2.10E-02
40GO:0052689: carboxylic ester hydrolase activity2.60E-02
41GO:0042803: protein homodimerization activity2.84E-02
42GO:0003924: GTPase activity3.19E-02
RankGO TermAdjusted P value
1GO:0009331: glycerol-3-phosphate dehydrogenase complex1.76E-04
2GO:0042807: central vacuole5.30E-04
3GO:0031966: mitochondrial membrane5.47E-04
4GO:0005811: lipid particle6.94E-04
5GO:0000326: protein storage vacuole6.94E-04
6GO:0045298: tubulin complex7.80E-04
7GO:0009705: plant-type vacuole membrane1.38E-03
8GO:0000790: nuclear chromatin2.39E-03
9GO:0005778: peroxisomal membrane3.62E-03
10GO:0019005: SCF ubiquitin ligase complex4.69E-03
11GO:0005887: integral component of plasma membrane5.16E-03
12GO:0016020: membrane5.94E-03
13GO:0005829: cytosol7.35E-03
14GO:0005654: nucleoplasm1.19E-02
15GO:0005618: cell wall1.24E-02
16GO:0009941: chloroplast envelope1.54E-02
17GO:0009505: plant-type cell wall1.72E-02
18GO:0005886: plasma membrane1.77E-02
19GO:0005874: microtubule2.36E-02
20GO:0031969: chloroplast membrane2.42E-02
21GO:0005794: Golgi apparatus2.56E-02
22GO:0005743: mitochondrial inner membrane3.03E-02
23GO:0005774: vacuolar membrane4.73E-02
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Gene type



Gene DE type