Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0007141: male meiosis I0.00E+00
2GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
3GO:0035264: multicellular organism growth0.00E+00
4GO:0071289: cellular response to nickel ion0.00E+00
5GO:0010200: response to chitin7.89E-13
6GO:0009164: nucleoside catabolic process2.01E-05
7GO:2000070: regulation of response to water deprivation7.49E-05
8GO:0009611: response to wounding8.08E-05
9GO:0051180: vitamin transport1.20E-04
10GO:0030974: thiamine pyrophosphate transport1.20E-04
11GO:0009865: pollen tube adhesion1.20E-04
12GO:0050691: regulation of defense response to virus by host1.20E-04
13GO:0006680: glucosylceramide catabolic process1.20E-04
14GO:2000280: regulation of root development1.41E-04
15GO:0006811: ion transport1.84E-04
16GO:0006470: protein dephosphorylation2.39E-04
17GO:0009873: ethylene-activated signaling pathway2.64E-04
18GO:0015893: drug transport2.77E-04
19GO:0006741: NADP biosynthetic process2.77E-04
20GO:0015709: thiosulfate transport2.77E-04
21GO:0071422: succinate transmembrane transport2.77E-04
22GO:0031407: oxylipin metabolic process2.77E-04
23GO:0006598: polyamine catabolic process4.58E-04
24GO:0080168: abscisic acid transport4.58E-04
25GO:0042344: indole glucosinolate catabolic process4.58E-04
26GO:0090630: activation of GTPase activity4.58E-04
27GO:0019674: NAD metabolic process4.58E-04
28GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'4.58E-04
29GO:0033014: tetrapyrrole biosynthetic process6.57E-04
30GO:0019363: pyridine nucleotide biosynthetic process6.57E-04
31GO:0015729: oxaloacetate transport6.57E-04
32GO:0045892: negative regulation of transcription, DNA-templated7.32E-04
33GO:0010107: potassium ion import8.72E-04
34GO:1902347: response to strigolactone8.72E-04
35GO:0009751: response to salicylic acid9.58E-04
36GO:0071423: malate transmembrane transport1.10E-03
37GO:0045487: gibberellin catabolic process1.10E-03
38GO:0010117: photoprotection1.10E-03
39GO:0051225: spindle assembly1.10E-03
40GO:0009790: embryo development1.15E-03
41GO:0035435: phosphate ion transmembrane transport1.35E-03
42GO:0047484: regulation of response to osmotic stress1.35E-03
43GO:0048232: male gamete generation1.35E-03
44GO:1901001: negative regulation of response to salt stress1.61E-03
45GO:0009737: response to abscisic acid1.71E-03
46GO:0008272: sulfate transport1.89E-03
47GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.89E-03
48GO:0006401: RNA catabolic process1.89E-03
49GO:0010161: red light signaling pathway1.89E-03
50GO:0006955: immune response1.89E-03
51GO:0048193: Golgi vesicle transport2.50E-03
52GO:0006839: mitochondrial transport2.59E-03
53GO:0006970: response to osmotic stress2.70E-03
54GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay2.82E-03
55GO:0006783: heme biosynthetic process2.82E-03
56GO:0051707: response to other organism2.93E-03
57GO:0006779: porphyrin-containing compound biosynthetic process3.16E-03
58GO:0006782: protoporphyrinogen IX biosynthetic process3.51E-03
59GO:0051026: chiasma assembly3.51E-03
60GO:0019538: protein metabolic process3.51E-03
61GO:0055062: phosphate ion homeostasis3.51E-03
62GO:0009682: induced systemic resistance3.88E-03
63GO:0052544: defense response by callose deposition in cell wall3.88E-03
64GO:0008285: negative regulation of cell proliferation3.88E-03
65GO:0010015: root morphogenesis3.88E-03
66GO:0006364: rRNA processing3.93E-03
67GO:0010105: negative regulation of ethylene-activated signaling pathway4.26E-03
68GO:0002237: response to molecule of bacterial origin5.04E-03
69GO:0048467: gynoecium development5.04E-03
70GO:0071732: cellular response to nitric oxide5.46E-03
71GO:0070588: calcium ion transmembrane transport5.46E-03
72GO:0006355: regulation of transcription, DNA-templated5.98E-03
73GO:0009414: response to water deprivation6.54E-03
74GO:0009695: jasmonic acid biosynthetic process6.76E-03
75GO:0006351: transcription, DNA-templated6.86E-03
76GO:0006979: response to oxidative stress6.86E-03
77GO:0031408: oxylipin biosynthetic process7.22E-03
78GO:0007131: reciprocal meiotic recombination7.69E-03
79GO:0030433: ubiquitin-dependent ERAD pathway7.69E-03
80GO:0030245: cellulose catabolic process7.69E-03
81GO:0009686: gibberellin biosynthetic process8.18E-03
82GO:0071369: cellular response to ethylene stimulus8.18E-03
83GO:0019722: calcium-mediated signaling8.66E-03
84GO:0000271: polysaccharide biosynthetic process9.68E-03
85GO:0010501: RNA secondary structure unwinding9.68E-03
86GO:0010118: stomatal movement9.68E-03
87GO:0010154: fruit development1.02E-02
88GO:0048868: pollen tube development1.02E-02
89GO:0045489: pectin biosynthetic process1.02E-02
90GO:0006814: sodium ion transport1.07E-02
91GO:0009749: response to glucose1.13E-02
92GO:0071281: cellular response to iron ion1.30E-02
93GO:1901657: glycosyl compound metabolic process1.30E-02
94GO:0009651: response to salt stress1.35E-02
95GO:0009639: response to red or far red light1.36E-02
96GO:0006310: DNA recombination1.36E-02
97GO:0019760: glucosinolate metabolic process1.36E-02
98GO:0010286: heat acclimation1.41E-02
99GO:0051607: defense response to virus1.47E-02
100GO:0009816: defense response to bacterium, incompatible interaction1.60E-02
101GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.60E-02
102GO:0015995: chlorophyll biosynthetic process1.72E-02
103GO:0009723: response to ethylene1.73E-02
104GO:0048481: plant ovule development1.85E-02
105GO:0009817: defense response to fungus, incompatible interaction1.85E-02
106GO:0045087: innate immune response2.19E-02
107GO:0016051: carbohydrate biosynthetic process2.19E-02
108GO:0042542: response to hydrogen peroxide2.55E-02
109GO:0016310: phosphorylation2.61E-02
110GO:0042546: cell wall biogenesis2.70E-02
111GO:0006629: lipid metabolic process2.74E-02
112GO:0008643: carbohydrate transport2.78E-02
113GO:0009644: response to high light intensity2.78E-02
114GO:0006855: drug transmembrane transport2.93E-02
115GO:0009753: response to jasmonic acid2.94E-02
116GO:0006260: DNA replication3.01E-02
117GO:0000165: MAPK cascade3.01E-02
118GO:0031347: regulation of defense response3.01E-02
119GO:0006812: cation transport3.09E-02
120GO:0009846: pollen germination3.09E-02
121GO:0006813: potassium ion transport3.25E-02
122GO:0010224: response to UV-B3.33E-02
123GO:0048367: shoot system development3.74E-02
124GO:0009620: response to fungus3.91E-02
125GO:0009742: brassinosteroid mediated signaling pathway4.35E-02
126GO:0000398: mRNA splicing, via spliceosome4.62E-02
127GO:0009738: abscisic acid-activated signaling pathway4.69E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0017048: Rho GTPase binding0.00E+00
3GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides4.28E-05
4GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity1.20E-04
5GO:0090440: abscisic acid transporter activity1.20E-04
6GO:0004348: glucosylceramidase activity1.20E-04
7GO:0042736: NADH kinase activity1.20E-04
8GO:0052894: norspermine:oxygen oxidoreductase activity1.20E-04
9GO:0090422: thiamine pyrophosphate transporter activity1.20E-04
10GO:0004722: protein serine/threonine phosphatase activity1.26E-04
11GO:0015297: antiporter activity1.77E-04
12GO:0015117: thiosulfate transmembrane transporter activity2.77E-04
13GO:1901677: phosphate transmembrane transporter activity2.77E-04
14GO:0016629: 12-oxophytodienoate reductase activity2.77E-04
15GO:0004103: choline kinase activity2.77E-04
16GO:0008883: glutamyl-tRNA reductase activity2.77E-04
17GO:0001047: core promoter binding2.77E-04
18GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity2.77E-04
19GO:0015141: succinate transmembrane transporter activity4.58E-04
20GO:0046423: allene-oxide cyclase activity4.58E-04
21GO:0004383: guanylate cyclase activity4.58E-04
22GO:0046592: polyamine oxidase activity4.58E-04
23GO:0005310: dicarboxylic acid transmembrane transporter activity4.58E-04
24GO:0005432: calcium:sodium antiporter activity6.57E-04
25GO:0004715: non-membrane spanning protein tyrosine kinase activity6.57E-04
26GO:0015131: oxaloacetate transmembrane transporter activity6.57E-04
27GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity6.57E-04
28GO:0001653: peptide receptor activity6.57E-04
29GO:0004659: prenyltransferase activity8.72E-04
30GO:0047631: ADP-ribose diphosphatase activity1.10E-03
31GO:0051011: microtubule minus-end binding1.10E-03
32GO:0000210: NAD+ diphosphatase activity1.35E-03
33GO:0019137: thioglucosidase activity1.35E-03
34GO:0019900: kinase binding1.61E-03
35GO:0004721: phosphoprotein phosphatase activity1.63E-03
36GO:0102483: scopolin beta-glucosidase activity1.63E-03
37GO:0015140: malate transmembrane transporter activity1.89E-03
38GO:0015491: cation:cation antiporter activity2.19E-03
39GO:0008422: beta-glucosidase activity2.48E-03
40GO:0003951: NAD+ kinase activity2.50E-03
41GO:0071949: FAD binding2.82E-03
42GO:0043565: sequence-specific DNA binding3.14E-03
43GO:0004713: protein tyrosine kinase activity3.51E-03
44GO:0015116: sulfate transmembrane transporter activity4.26E-03
45GO:0005262: calcium channel activity4.64E-03
46GO:0019888: protein phosphatase regulator activity4.64E-03
47GO:0000175: 3'-5'-exoribonuclease activity4.64E-03
48GO:0008131: primary amine oxidase activity5.04E-03
49GO:0003700: transcription factor activity, sequence-specific DNA binding6.32E-03
50GO:0044212: transcription regulatory region DNA binding6.77E-03
51GO:0004707: MAP kinase activity7.22E-03
52GO:0004540: ribonuclease activity7.22E-03
53GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity7.69E-03
54GO:0008270: zinc ion binding7.80E-03
55GO:0046872: metal ion binding9.28E-03
56GO:0010181: FMN binding1.07E-02
57GO:0019901: protein kinase binding1.13E-02
58GO:0004806: triglyceride lipase activity1.72E-02
59GO:0004004: ATP-dependent RNA helicase activity1.72E-02
60GO:0015238: drug transmembrane transporter activity1.92E-02
61GO:0005096: GTPase activator activity1.92E-02
62GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.05E-02
63GO:0004712: protein serine/threonine/tyrosine kinase activity2.33E-02
64GO:0050661: NADP binding2.41E-02
65GO:0035091: phosphatidylinositol binding2.78E-02
66GO:0031625: ubiquitin protein ligase binding3.49E-02
67GO:0016301: kinase activity3.83E-02
68GO:0022857: transmembrane transporter activity4.00E-02
69GO:0016758: transferase activity, transferring hexosyl groups4.80E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle1.20E-04
2GO:0070652: HAUS complex4.58E-04
3GO:0045177: apical part of cell6.57E-04
4GO:0000178: exosome (RNase complex)1.10E-03
5GO:0090406: pollen tube2.93E-03
6GO:0016604: nuclear body3.16E-03
7GO:0005876: spindle microtubule3.16E-03
8GO:0000159: protein phosphatase type 2A complex3.88E-03
9GO:0005938: cell cortex4.64E-03
10GO:0005743: mitochondrial inner membrane4.82E-03
11GO:0000790: nuclear chromatin9.17E-03
12GO:0005770: late endosome1.02E-02
13GO:0000932: P-body1.54E-02
14GO:0031902: late endosome membrane2.48E-02
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Gene type



Gene DE type