co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0032928: regulation of superoxide anion generation	0.00E+00
3	GO:0034972: histone H3-R26 methylation	4.18E-05
4	GO:0034971: histone H3-R17 methylation	4.18E-05
5	GO:0034970: histone H3-R2 methylation	4.18E-05
6	GO:0007154: cell communication	1.04E-04
7	GO:0016122: xanthophyll metabolic process	1.04E-04
8	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	1.04E-04
9	GO:0009150: purine ribonucleotide metabolic process	1.78E-04
10	GO:0071492: cellular response to UV-A	1.78E-04
11	GO:0010476: gibberellin mediated signaling pathway	1.78E-04
12	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.78E-04
13	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.78E-04
14	GO:0009399: nitrogen fixation	2.63E-04
15	GO:0009963: positive regulation of flavonoid biosynthetic process	2.63E-04
16	GO:0009647: skotomorphogenesis	2.63E-04
17	GO:0009765: photosynthesis, light harvesting	3.53E-04
18	GO:0009649: entrainment of circadian clock	3.53E-04
19	GO:0006749: glutathione metabolic process	3.53E-04
20	GO:0034613: cellular protein localization	3.53E-04
21	GO:0006542: glutamine biosynthetic process	3.53E-04
22	GO:0071486: cellular response to high light intensity	3.53E-04
23	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	3.53E-04
24	GO:0010117: photoprotection	4.50E-04
25	GO:0046283: anthocyanin-containing compound metabolic process	4.50E-04
26	GO:0070814: hydrogen sulfide biosynthetic process	5.51E-04
27	GO:0031053: primary miRNA processing	5.51E-04
28	GO:0006796: phosphate-containing compound metabolic process	5.51E-04
29	GO:0009117: nucleotide metabolic process	5.51E-04
30	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.51E-04
31	GO:0016070: RNA metabolic process	5.51E-04
32	GO:0048444: floral organ morphogenesis	6.58E-04
33	GO:0010161: red light signaling pathway	7.69E-04
34	GO:0009231: riboflavin biosynthetic process	8.84E-04
35	GO:0045292: mRNA cis splicing, via spliceosome	8.84E-04
36	GO:0009880: embryonic pattern specification	1.00E-03
37	GO:0019430: removal of superoxide radicals	1.00E-03
38	GO:0010100: negative regulation of photomorphogenesis	1.00E-03
39	GO:0032544: plastid translation	1.00E-03
40	GO:0022900: electron transport chain	1.00E-03
41	GO:0009585: red, far-red light phototransduction	1.01E-03
42	GO:0009056: catabolic process	1.13E-03
43	GO:0015780: nucleotide-sugar transport	1.13E-03
44	GO:0009970: cellular response to sulfate starvation	1.39E-03
45	GO:0000103: sulfate assimilation	1.39E-03
46	GO:0009688: abscisic acid biosynthetic process	1.39E-03
47	GO:0009641: shade avoidance	1.39E-03
48	GO:0006790: sulfur compound metabolic process	1.67E-03
49	GO:0009785: blue light signaling pathway	1.82E-03
50	GO:0019915: lipid storage	2.80E-03
51	GO:0006012: galactose metabolic process	3.15E-03
52	GO:0010051: xylem and phloem pattern formation	3.71E-03
53	GO:0042128: nitrate assimilation	6.27E-03
54	GO:0048573: photoperiodism, flowering	6.50E-03
55	GO:0006281: DNA repair	6.79E-03
56	GO:0009407: toxin catabolic process	7.47E-03
57	GO:0010119: regulation of stomatal movement	7.72E-03
58	GO:0009640: photomorphogenesis	9.82E-03
59	GO:0008643: carbohydrate transport	1.04E-02
60	GO:0009636: response to toxic substance	1.07E-02
61	GO:0010224: response to UV-B	1.24E-02
62	GO:0009909: regulation of flower development	1.30E-02
63	GO:0000398: mRNA splicing, via spliceosome	1.72E-02
64	GO:0010228: vegetative to reproductive phase transition of meristem	2.37E-02
65	GO:0009739: response to gibberellin	2.48E-02
66	GO:0009409: response to cold	3.32E-02
67	GO:0080167: response to karrikin	3.65E-02
68	GO:0005975: carbohydrate metabolic process	3.71E-02
69	GO:0045892: negative regulation of transcription, DNA-templated	4.19E-02
70	GO:0009408: response to heat	4.81E-02
71	GO:0048364: root development	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0035241: protein-arginine omega-N monomethyltransferase activity	1.04E-04
3	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	1.04E-04
4	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	1.04E-04
5	GO:0010331: gibberellin binding	1.04E-04
6	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	1.04E-04
7	GO:0004848: ureidoglycolate hydrolase activity	1.78E-04
8	GO:0003935: GTP cyclohydrolase II activity	1.78E-04
9	GO:0004781: sulfate adenylyltransferase (ATP) activity	1.78E-04
10	GO:0008469: histone-arginine N-methyltransferase activity	1.78E-04
11	GO:0035529: NADH pyrophosphatase activity	2.63E-04
12	GO:0000339: RNA cap binding	2.63E-04
13	GO:0047627: adenylylsulfatase activity	2.63E-04
14	GO:0004356: glutamate-ammonia ligase activity	4.50E-04
15	GO:0004784: superoxide dismutase activity	5.51E-04
16	GO:0004427: inorganic diphosphatase activity	7.69E-04
17	GO:0005338: nucleotide-sugar transmembrane transporter activity	7.69E-04
18	GO:0004034: aldose 1-epimerase activity	8.84E-04
19	GO:0071949: FAD binding	1.13E-03
20	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.13E-03
21	GO:0031072: heat shock protein binding	1.82E-03
22	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.97E-03
23	GO:0005528: FK506 binding	2.46E-03
24	GO:0004176: ATP-dependent peptidase activity	2.80E-03
25	GO:0016853: isomerase activity	4.11E-03
26	GO:0048038: quinone binding	4.51E-03
27	GO:0008237: metallopeptidase activity	5.36E-03
28	GO:0016168: chlorophyll binding	6.04E-03
29	GO:0030247: polysaccharide binding	6.50E-03
30	GO:0008236: serine-type peptidase activity	6.74E-03
31	GO:0004222: metalloendopeptidase activity	7.47E-03
32	GO:0004364: glutathione transferase activity	9.55E-03
33	GO:0004185: serine-type carboxypeptidase activity	9.82E-03
34	GO:0051537: 2 iron, 2 sulfur cluster binding	1.04E-02
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.09E-02
36	GO:0016787: hydrolase activity	1.20E-02
37	GO:0022857: transmembrane transporter activity	1.49E-02
38	GO:0051082: unfolded protein binding	1.55E-02
39	GO:0015297: antiporter activity	2.22E-02
40	GO:0042802: identical protein binding	2.72E-02
41	GO:0008168: methyltransferase activity	3.05E-02
42	GO:0046982: protein heterodimerization activity	3.09E-02
43	GO:0000287: magnesium ion binding	3.09E-02
44	GO:0016788: hydrolase activity, acting on ester bonds	3.17E-02
45	GO:0016491: oxidoreductase activity	3.23E-02
46	GO:0052689: carboxylic ester hydrolase activity	3.92E-02
47	GO:0042803: protein homodimerization activity	4.29E-02
48	GO:0003735: structural constituent of ribosome	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.37E-05
2	GO:0000152: nuclear ubiquitin ligase complex	4.18E-05
3	GO:0005845: mRNA cap binding complex	4.18E-05
4	GO:0005846: nuclear cap binding complex	1.04E-04
5	GO:0042646: plastid nucleoid	2.63E-04
6	GO:0009517: PSII associated light-harvesting complex II	3.53E-04
7	GO:0009535: chloroplast thylakoid membrane	5.65E-04
8	GO:0042644: chloroplast nucleoid	1.13E-03
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.13E-03
10	GO:0016604: nuclear body	1.25E-03
11	GO:0005764: lysosome	1.97E-03
12	GO:0005875: microtubule associated complex	2.29E-03
13	GO:0015935: small ribosomal subunit	2.80E-03
14	GO:0009523: photosystem II	4.31E-03
15	GO:0009295: nucleoid	5.36E-03
16	GO:0009941: chloroplast envelope	8.37E-03
17	GO:0009570: chloroplast stroma	1.38E-02
18	GO:0005777: peroxisome	1.39E-02
19	GO:0009579: thylakoid	1.44E-02
20	GO:0009706: chloroplast inner membrane	1.55E-02
21	GO:0009543: chloroplast thylakoid lumen	1.82E-02
22	GO:0005829: cytosol	2.66E-02
23	GO:0046658: anchored component of plasma membrane	2.80E-02
24	GO:0009536: plastid	3.01E-02
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.34E-02
26	GO:0031969: chloroplast membrane	3.65E-02
27	GO:0005743: mitochondrial inner membrane	4.57E-02