co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G44020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0046294: formaldehyde catabolic process	0.00E+00
4	GO:0009106: lipoate metabolic process	0.00E+00
5	GO:0036172: thiamine salvage	0.00E+00
6	GO:0071000: response to magnetism	0.00E+00
7	GO:0046460: neutral lipid biosynthetic process	0.00E+00
8	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
9	GO:0032928: regulation of superoxide anion generation	0.00E+00
10	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
11	GO:0009658: chloroplast organization	1.17E-06
12	GO:0048564: photosystem I assembly	2.27E-06
13	GO:0010207: photosystem II assembly	2.15E-05
14	GO:0010117: photoprotection	4.05E-05
15	GO:0046283: anthocyanin-containing compound metabolic process	4.05E-05
16	GO:0034970: histone H3-R2 methylation	1.82E-04
17	GO:0034972: histone H3-R26 methylation	1.82E-04
18	GO:0071266: 'de novo' L-methionine biosynthetic process	1.82E-04
19	GO:1902265: abscisic acid homeostasis	1.82E-04
20	GO:0019343: cysteine biosynthetic process via cystathionine	1.82E-04
21	GO:0019346: transsulfuration	1.82E-04
22	GO:0034971: histone H3-R17 methylation	1.82E-04
23	GO:0072387: flavin adenine dinucleotide metabolic process	1.82E-04
24	GO:0071454: cellular response to anoxia	1.82E-04
25	GO:0071461: cellular response to redox state	1.82E-04
26	GO:0009098: leucine biosynthetic process	2.59E-04
27	GO:0016122: xanthophyll metabolic process	4.10E-04
28	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.10E-04
29	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.10E-04
30	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.10E-04
31	GO:0010343: singlet oxygen-mediated programmed cell death	4.10E-04
32	GO:1901529: positive regulation of anion channel activity	4.10E-04
33	GO:0060359: response to ammonium ion	4.10E-04
34	GO:0080005: photosystem stoichiometry adjustment	4.10E-04
35	GO:0010617: circadian regulation of calcium ion oscillation	4.10E-04
36	GO:0007154: cell communication	4.10E-04
37	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.10E-04
38	GO:0099402: plant organ development	4.10E-04
39	GO:0080183: response to photooxidative stress	4.10E-04
40	GO:0031022: nuclear migration along microfilament	6.69E-04
41	GO:1902448: positive regulation of shade avoidance	6.69E-04
42	GO:1901672: positive regulation of systemic acquired resistance	6.69E-04
43	GO:0009150: purine ribonucleotide metabolic process	6.69E-04
44	GO:0071492: cellular response to UV-A	6.69E-04
45	GO:0006696: ergosterol biosynthetic process	6.69E-04
46	GO:0044375: regulation of peroxisome size	6.69E-04
47	GO:0043157: response to cation stress	6.69E-04
48	GO:0009963: positive regulation of flavonoid biosynthetic process	9.55E-04
49	GO:0009647: skotomorphogenesis	9.55E-04
50	GO:0033014: tetrapyrrole biosynthetic process	9.55E-04
51	GO:1901332: negative regulation of lateral root development	9.55E-04
52	GO:2001141: regulation of RNA biosynthetic process	9.55E-04
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.55E-04
54	GO:0016117: carotenoid biosynthetic process	1.20E-03
55	GO:0071486: cellular response to high light intensity	1.27E-03
56	GO:0009765: photosynthesis, light harvesting	1.27E-03
57	GO:0009649: entrainment of circadian clock	1.27E-03
58	GO:1902347: response to strigolactone	1.27E-03
59	GO:0009902: chloroplast relocation	1.27E-03
60	GO:0034613: cellular protein localization	1.27E-03
61	GO:0009416: response to light stimulus	1.33E-03
62	GO:0009107: lipoate biosynthetic process	1.61E-03
63	GO:0016120: carotene biosynthetic process	1.61E-03
64	GO:0045038: protein import into chloroplast thylakoid membrane	1.61E-03
65	GO:0035434: copper ion transmembrane transport	1.61E-03
66	GO:0009229: thiamine diphosphate biosynthetic process	1.61E-03
67	GO:0009959: negative gravitropism	1.98E-03
68	GO:0006555: methionine metabolic process	1.98E-03
69	GO:1901371: regulation of leaf morphogenesis	1.98E-03
70	GO:0009228: thiamine biosynthetic process	1.98E-03
71	GO:0060918: auxin transport	1.98E-03
72	GO:0010190: cytochrome b6f complex assembly	1.98E-03
73	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.98E-03
74	GO:0010310: regulation of hydrogen peroxide metabolic process	2.38E-03
75	GO:0019509: L-methionine salvage from methylthioadenosine	2.38E-03
76	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.38E-03
77	GO:0034389: lipid particle organization	2.38E-03
78	GO:0009903: chloroplast avoidance movement	2.38E-03
79	GO:0010019: chloroplast-nucleus signaling pathway	2.38E-03
80	GO:1900056: negative regulation of leaf senescence	2.80E-03
81	GO:0051510: regulation of unidimensional cell growth	2.80E-03
82	GO:0010038: response to metal ion	2.80E-03
83	GO:0055114: oxidation-reduction process	3.23E-03
84	GO:0009231: riboflavin biosynthetic process	3.24E-03
85	GO:0016559: peroxisome fission	3.24E-03
86	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.24E-03
87	GO:0009704: de-etiolation	3.24E-03
88	GO:0071482: cellular response to light stimulus	3.71E-03
89	GO:0022900: electron transport chain	3.71E-03
90	GO:0009880: embryonic pattern specification	3.71E-03
91	GO:0019430: removal of superoxide radicals	3.71E-03
92	GO:0032544: plastid translation	3.71E-03
93	GO:0009637: response to blue light	4.05E-03
94	GO:0019432: triglyceride biosynthetic process	4.20E-03
95	GO:0006783: heme biosynthetic process	4.20E-03
96	GO:1900426: positive regulation of defense response to bacterium	4.71E-03
97	GO:0009638: phototropism	4.71E-03
98	GO:0006779: porphyrin-containing compound biosynthetic process	4.71E-03
99	GO:0010380: regulation of chlorophyll biosynthetic process	4.71E-03
100	GO:0009744: response to sucrose	5.21E-03
101	GO:0009640: photomorphogenesis	5.21E-03
102	GO:0009641: shade avoidance	5.24E-03
103	GO:0051555: flavonol biosynthetic process	5.24E-03
104	GO:0009688: abscisic acid biosynthetic process	5.24E-03
105	GO:0009644: response to high light intensity	5.63E-03
106	GO:0043085: positive regulation of catalytic activity	5.79E-03
107	GO:0006352: DNA-templated transcription, initiation	5.79E-03
108	GO:0006790: sulfur compound metabolic process	6.35E-03
109	GO:0010075: regulation of meristem growth	6.94E-03
110	GO:0009767: photosynthetic electron transport chain	6.94E-03
111	GO:0009785: blue light signaling pathway	6.94E-03
112	GO:0030048: actin filament-based movement	6.94E-03
113	GO:0034605: cellular response to heat	7.55E-03
114	GO:0019253: reductive pentose-phosphate cycle	7.55E-03
115	GO:0007031: peroxisome organization	8.18E-03
116	GO:0006071: glycerol metabolic process	8.82E-03
117	GO:0000162: tryptophan biosynthetic process	8.82E-03
118	GO:0006810: transport	8.97E-03
119	GO:2000377: regulation of reactive oxygen species metabolic process	9.48E-03
120	GO:0006825: copper ion transport	1.02E-02
121	GO:0007017: microtubule-based process	1.02E-02
122	GO:0016226: iron-sulfur cluster assembly	1.16E-02
123	GO:0006817: phosphate ion transport	1.31E-02
124	GO:0070417: cellular response to cold	1.38E-02
125	GO:0010118: stomatal movement	1.46E-02
126	GO:0010051: xylem and phloem pattern formation	1.46E-02
127	GO:0010197: polar nucleus fusion	1.54E-02
128	GO:0042752: regulation of circadian rhythm	1.62E-02
129	GO:0009646: response to absence of light	1.62E-02
130	GO:0009851: auxin biosynthetic process	1.70E-02
131	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.79E-02
132	GO:0009630: gravitropism	1.87E-02
133	GO:0019761: glucosinolate biosynthetic process	1.87E-02
134	GO:0030163: protein catabolic process	1.96E-02
135	GO:0010286: heat acclimation	2.14E-02
136	GO:0016126: sterol biosynthetic process	2.32E-02
137	GO:0010027: thylakoid membrane organization	2.32E-02
138	GO:0010029: regulation of seed germination	2.42E-02
139	GO:0015995: chlorophyll biosynthetic process	2.61E-02
140	GO:0048573: photoperiodism, flowering	2.61E-02
141	GO:0018298: protein-chromophore linkage	2.81E-02
142	GO:0010218: response to far red light	3.01E-02
143	GO:0007568: aging	3.11E-02
144	GO:0009910: negative regulation of flower development	3.11E-02
145	GO:0010119: regulation of stomatal movement	3.11E-02
146	GO:0010043: response to zinc ion	3.11E-02
147	GO:0006508: proteolysis	3.15E-02
148	GO:0010114: response to red light	3.98E-02
149	GO:0006260: DNA replication	4.56E-02
150	GO:0042538: hyperosmotic salinity response	4.68E-02
151	GO:0009585: red, far-red light phototransduction	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0045436: lycopene beta cyclase activity	0.00E+00
4	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
5	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
6	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
9	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
10	GO:0004848: ureidoglycolate hydrolase activity	5.87E-06
11	GO:0048038: quinone binding	6.34E-06
12	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.82E-04
13	GO:0004123: cystathionine gamma-lyase activity	1.82E-04
14	GO:0046906: tetrapyrrole binding	1.82E-04
15	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.82E-04
16	GO:0004325: ferrochelatase activity	1.82E-04
17	GO:0004121: cystathionine beta-lyase activity	1.82E-04
18	GO:0051996: squalene synthase activity	1.82E-04
19	GO:0016783: sulfurtransferase activity	1.82E-04
20	GO:0071949: FAD binding	2.17E-04
21	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.10E-04
22	GO:0016415: octanoyltransferase activity	4.10E-04
23	GO:0004046: aminoacylase activity	4.10E-04
24	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.10E-04
25	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.10E-04
26	GO:0003862: 3-isopropylmalate dehydrogenase activity	4.10E-04
27	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.10E-04
28	GO:0017118: lipoyltransferase activity	4.10E-04
29	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.10E-04
30	GO:0016491: oxidoreductase activity	5.92E-04
31	GO:0008469: histone-arginine N-methyltransferase activity	6.69E-04
32	GO:0008430: selenium binding	6.69E-04
33	GO:0004180: carboxypeptidase activity	6.69E-04
34	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.69E-04
35	GO:0032947: protein complex scaffold	6.69E-04
36	GO:0003861: 3-isopropylmalate dehydratase activity	6.69E-04
37	GO:0003935: GTP cyclohydrolase II activity	6.69E-04
38	GO:0003962: cystathionine gamma-synthase activity	6.69E-04
39	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.69E-04
40	GO:0042802: identical protein binding	7.07E-04
41	GO:0000254: C-4 methylsterol oxidase activity	9.55E-04
42	GO:0016851: magnesium chelatase activity	9.55E-04
43	GO:0004792: thiosulfate sulfurtransferase activity	9.55E-04
44	GO:0009882: blue light photoreceptor activity	9.55E-04
45	GO:0047627: adenylylsulfatase activity	9.55E-04
46	GO:0001053: plastid sigma factor activity	1.27E-03
47	GO:0004834: tryptophan synthase activity	1.27E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.27E-03
49	GO:0016987: sigma factor activity	1.27E-03
50	GO:0004784: superoxide dismutase activity	1.98E-03
51	GO:0004144: diacylglycerol O-acyltransferase activity	2.38E-03
52	GO:0019899: enzyme binding	2.80E-03
53	GO:0004222: metalloendopeptidase activity	3.53E-03
54	GO:0005375: copper ion transmembrane transporter activity	3.71E-03
55	GO:0005315: inorganic phosphate transmembrane transporter activity	6.94E-03
56	GO:0031072: heat shock protein binding	6.94E-03
57	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.55E-03
58	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	8.57E-03
59	GO:0003887: DNA-directed DNA polymerase activity	8.82E-03
60	GO:0051536: iron-sulfur cluster binding	9.48E-03
61	GO:0004176: ATP-dependent peptidase activity	1.09E-02
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.29E-02
63	GO:0008080: N-acetyltransferase activity	1.54E-02
64	GO:0005506: iron ion binding	1.61E-02
65	GO:0008194: UDP-glycosyltransferase activity	1.94E-02
66	GO:0008237: metallopeptidase activity	2.14E-02
67	GO:0016597: amino acid binding	2.23E-02
68	GO:0016168: chlorophyll binding	2.42E-02
69	GO:0046872: metal ion binding	2.43E-02
70	GO:0008168: methyltransferase activity	2.59E-02
71	GO:0030247: polysaccharide binding	2.61E-02
72	GO:0008236: serine-type peptidase activity	2.71E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	2.74E-02
74	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.32E-02
75	GO:0051539: 4 iron, 4 sulfur cluster binding	3.65E-02
76	GO:0052689: carboxylic ester hydrolase activity	3.68E-02
77	GO:0004185: serine-type carboxypeptidase activity	3.98E-02
78	GO:0042803: protein homodimerization activity	4.17E-02
79	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
80	GO:0005198: structural molecule activity	4.32E-02
81	GO:0015293: symporter activity	4.32E-02
82	GO:0051287: NAD binding	4.56E-02
83	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.33E-28
2	GO:0009535: chloroplast thylakoid membrane	2.54E-16
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.68E-06
4	GO:0009570: chloroplast stroma	2.66E-05
5	GO:0031969: chloroplast membrane	2.93E-05
6	GO:0031972: chloroplast intermembrane space	1.82E-04
7	GO:0000152: nuclear ubiquitin ligase complex	1.82E-04
8	GO:0016604: nuclear body	2.59E-04
9	GO:0080085: signal recognition particle, chloroplast targeting	4.10E-04
10	GO:0016605: PML body	6.69E-04
11	GO:0042646: plastid nucleoid	9.55E-04
12	GO:0030286: dynein complex	1.27E-03
13	GO:0009517: PSII associated light-harvesting complex II	1.27E-03
14	GO:0055035: plastid thylakoid membrane	1.61E-03
15	GO:0009579: thylakoid	1.82E-03
16	GO:0005779: integral component of peroxisomal membrane	3.71E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.71E-03
18	GO:0005811: lipid particle	3.71E-03
19	GO:0042644: chloroplast nucleoid	4.20E-03
20	GO:0009536: plastid	6.56E-03
21	GO:0009534: chloroplast thylakoid	7.54E-03
22	GO:0043234: protein complex	8.82E-03
23	GO:0005875: microtubule associated complex	8.82E-03
24	GO:0009706: chloroplast inner membrane	1.00E-02
25	GO:0015935: small ribosomal subunit	1.09E-02
26	GO:0005623: cell	1.29E-02
27	GO:0009523: photosystem II	1.70E-02
28	GO:0010319: stromule	2.14E-02
29	GO:0009295: nucleoid	2.14E-02
30	GO:0005778: peroxisomal membrane	2.14E-02
31	GO:0009941: chloroplast envelope	2.51E-02
32	GO:0005777: peroxisome	2.73E-02
33	GO:0005773: vacuole	3.14E-02
34	GO:0031966: mitochondrial membrane	4.68E-02