Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G44010

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
2GO:0046487: glyoxylate metabolic process0.00E+00
3GO:0070918: production of small RNA involved in gene silencing by RNA0.00E+00
4GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
5GO:1990258: histone glutamine methylation0.00E+00
6GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
7GO:0090239: regulation of histone H4 acetylation0.00E+00
8GO:0001881: receptor recycling0.00E+00
9GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
10GO:0044843: cell cycle G1/S phase transition0.00E+00
11GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
12GO:0006412: translation1.06E-156
13GO:0042254: ribosome biogenesis5.25E-55
14GO:0000027: ribosomal large subunit assembly1.26E-12
15GO:0006626: protein targeting to mitochondrion2.87E-08
16GO:0000028: ribosomal small subunit assembly3.50E-08
17GO:0009735: response to cytokinin3.38E-06
18GO:0000387: spliceosomal snRNP assembly9.27E-06
19GO:0000398: mRNA splicing, via spliceosome1.19E-05
20GO:0006452: translational frameshifting2.75E-05
21GO:0045905: positive regulation of translational termination2.75E-05
22GO:0045901: positive regulation of translational elongation2.75E-05
23GO:0009955: adaxial/abaxial pattern specification3.97E-05
24GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c6.06E-05
25GO:1902626: assembly of large subunit precursor of preribosome8.78E-05
26GO:0002181: cytoplasmic translation8.78E-05
27GO:0006511: ubiquitin-dependent protein catabolic process9.94E-05
28GO:0042274: ribosomal small subunit biogenesis3.01E-04
29GO:0031167: rRNA methylation4.48E-04
30GO:0043248: proteasome assembly6.21E-04
31GO:0045040: protein import into mitochondrial outer membrane6.21E-04
32GO:0006364: rRNA processing7.97E-04
33GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.10E-04
34GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.10E-04
35GO:0018002: N-terminal peptidyl-glutamic acid acetylation8.10E-04
36GO:0032365: intracellular lipid transport8.10E-04
37GO:0006407: rRNA export from nucleus8.10E-04
38GO:0030150: protein import into mitochondrial matrix8.10E-04
39GO:0006475: internal protein amino acid acetylation8.10E-04
40GO:0015801: aromatic amino acid transport8.10E-04
41GO:0017198: N-terminal peptidyl-serine acetylation8.10E-04
42GO:0030490: maturation of SSU-rRNA8.10E-04
43GO:0009651: response to salt stress8.76E-04
44GO:0015992: proton transport1.04E-03
45GO:0001510: RNA methylation1.59E-03
46GO:0048569: post-embryonic animal organ development1.75E-03
47GO:0043981: histone H4-K5 acetylation1.75E-03
48GO:0009967: positive regulation of signal transduction1.75E-03
49GO:0051788: response to misfolded protein1.75E-03
50GO:0015786: UDP-glucose transport1.75E-03
51GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.75E-03
52GO:0045041: protein import into mitochondrial intermembrane space1.75E-03
53GO:0009245: lipid A biosynthetic process1.91E-03
54GO:0006954: inflammatory response2.90E-03
55GO:0008333: endosome to lysosome transport2.90E-03
56GO:0009150: purine ribonucleotide metabolic process2.90E-03
57GO:0045793: positive regulation of cell size2.90E-03
58GO:0015783: GDP-fucose transport2.90E-03
59GO:0034227: tRNA thio-modification2.90E-03
60GO:0042256: mature ribosome assembly2.90E-03
61GO:0090506: axillary shoot meristem initiation2.90E-03
62GO:0006414: translational elongation3.29E-03
63GO:0006413: translational initiation3.47E-03
64GO:0006820: anion transport3.52E-03
65GO:0051603: proteolysis involved in cellular protein catabolic process3.84E-03
66GO:0070301: cellular response to hydrogen peroxide4.23E-03
67GO:0006241: CTP biosynthetic process4.23E-03
68GO:0072334: UDP-galactose transmembrane transport4.23E-03
69GO:0009647: skotomorphogenesis4.23E-03
70GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.23E-03
71GO:0006165: nucleoside diphosphate phosphorylation4.23E-03
72GO:0006228: UTP biosynthetic process4.23E-03
73GO:0006164: purine nucleotide biosynthetic process4.23E-03
74GO:0006168: adenine salvage4.23E-03
75GO:0046513: ceramide biosynthetic process4.23E-03
76GO:0032877: positive regulation of DNA endoreduplication4.23E-03
77GO:0046836: glycolipid transport4.23E-03
78GO:0006166: purine ribonucleoside salvage4.23E-03
79GO:0006446: regulation of translational initiation4.53E-03
80GO:0006183: GTP biosynthetic process5.72E-03
81GO:0010363: regulation of plant-type hypersensitive response5.72E-03
82GO:2000032: regulation of secondary shoot formation5.72E-03
83GO:0051781: positive regulation of cell division5.72E-03
84GO:0010043: response to zinc ion7.03E-03
85GO:0045116: protein neddylation7.36E-03
86GO:0071493: cellular response to UV-B7.36E-03
87GO:0007029: endoplasmic reticulum organization7.36E-03
88GO:1902183: regulation of shoot apical meristem development7.36E-03
89GO:0044209: AMP salvage7.36E-03
90GO:0061077: chaperone-mediated protein folding7.68E-03
91GO:0000470: maturation of LSU-rRNA9.16E-03
92GO:0006574: valine catabolic process9.16E-03
93GO:0001731: formation of translation preinitiation complex9.16E-03
94GO:0016070: RNA metabolic process9.16E-03
95GO:0040007: growth9.21E-03
96GO:0008283: cell proliferation1.10E-02
97GO:1901001: negative regulation of response to salt stress1.11E-02
98GO:0000911: cytokinesis by cell plate formation1.11E-02
99GO:0042026: protein refolding1.11E-02
100GO:0006458: 'de novo' protein folding1.11E-02
101GO:0000054: ribosomal subunit export from nucleus1.11E-02
102GO:0000245: spliceosomal complex assembly1.11E-02
103GO:0009554: megasporogenesis1.11E-02
104GO:0009648: photoperiodism1.11E-02
105GO:0008033: tRNA processing1.18E-02
106GO:0000413: protein peptidyl-prolyl isomerization1.18E-02
107GO:0009965: leaf morphogenesis1.27E-02
108GO:1900056: negative regulation of leaf senescence1.32E-02
109GO:0032880: regulation of protein localization1.32E-02
110GO:0048528: post-embryonic root development1.32E-02
111GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.54E-02
112GO:0009690: cytokinin metabolic process1.54E-02
113GO:0006605: protein targeting1.54E-02
114GO:0031540: regulation of anthocyanin biosynthetic process1.54E-02
115GO:0001558: regulation of cell growth1.77E-02
116GO:0010204: defense response signaling pathway, resistance gene-independent1.77E-02
117GO:0044030: regulation of DNA methylation1.77E-02
118GO:0030163: protein catabolic process1.80E-02
119GO:0046685: response to arsenic-containing substance2.01E-02
120GO:0006189: 'de novo' IMP biosynthetic process2.01E-02
121GO:0048589: developmental growth2.01E-02
122GO:0015780: nucleotide-sugar transport2.01E-02
123GO:0098656: anion transmembrane transport2.01E-02
124GO:0046686: response to cadmium ion2.14E-02
125GO:0042761: very long-chain fatty acid biosynthetic process2.27E-02
126GO:0009870: defense response signaling pathway, resistance gene-dependent2.53E-02
127GO:0043069: negative regulation of programmed cell death2.53E-02
128GO:0009793: embryo development ending in seed dormancy2.66E-02
129GO:0006913: nucleocytoplasmic transport2.81E-02
130GO:0015770: sucrose transport2.81E-02
131GO:0010015: root morphogenesis2.81E-02
132GO:0008361: regulation of cell size3.09E-02
133GO:0006790: sulfur compound metabolic process3.09E-02
134GO:0016925: protein sumoylation3.09E-02
135GO:0010102: lateral root morphogenesis3.39E-02
136GO:2000028: regulation of photoperiodism, flowering3.39E-02
137GO:0048467: gynoecium development3.69E-02
138GO:0002237: response to molecule of bacterial origin3.69E-02
139GO:0007034: vacuolar transport3.69E-02
140GO:0009116: nucleoside metabolic process4.66E-02
141GO:0006406: mRNA export from nucleus4.66E-02
142GO:0006289: nucleotide-excision repair4.66E-02
143GO:0006487: protein N-linked glycosylation4.66E-02
144GO:0051302: regulation of cell division4.99E-02
RankGO TermAdjusted P value
1GO:0052873: FMN reductase (NADPH) activity0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:1990259: histone-glutamine methyltransferase activity0.00E+00
4GO:0008752: FMN reductase activity0.00E+00
5GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
6GO:0016881: acid-amino acid ligase activity0.00E+00
7GO:0003735: structural constituent of ribosome1.47E-194
8GO:0003729: mRNA binding3.36E-38
9GO:0019843: rRNA binding7.98E-15
10GO:0004298: threonine-type endopeptidase activity2.80E-07
11GO:0001055: RNA polymerase II activity9.27E-06
12GO:0001054: RNA polymerase I activity1.84E-05
13GO:0001056: RNA polymerase III activity2.48E-05
14GO:0003746: translation elongation factor activity3.73E-05
15GO:0003723: RNA binding6.69E-05
16GO:0043022: ribosome binding8.72E-05
17GO:0008649: rRNA methyltransferase activity8.78E-05
18GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.78E-04
19GO:0008097: 5S rRNA binding1.80E-04
20GO:0008233: peptidase activity3.03E-04
21GO:0031177: phosphopantetheine binding6.21E-04
22GO:0003899: DNA-directed 5'-3' RNA polymerase activity7.97E-04
23GO:0000824: inositol tetrakisphosphate 3-kinase activity8.10E-04
24GO:1990189: peptide-serine-N-acetyltransferase activity8.10E-04
25GO:0047326: inositol tetrakisphosphate 5-kinase activity8.10E-04
26GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity8.10E-04
27GO:1990190: peptide-glutamate-N-acetyltransferase activity8.10E-04
28GO:0005080: protein kinase C binding8.10E-04
29GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity8.10E-04
30GO:0035614: snRNA stem-loop binding8.10E-04
31GO:0000035: acyl binding8.20E-04
32GO:0008121: ubiquinol-cytochrome-c reductase activity1.04E-03
33GO:0030515: snoRNA binding1.04E-03
34GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.30E-03
35GO:0015288: porin activity1.30E-03
36GO:0008308: voltage-gated anion channel activity1.59E-03
37GO:0015173: aromatic amino acid transmembrane transporter activity1.75E-03
38GO:0004750: ribulose-phosphate 3-epimerase activity1.75E-03
39GO:0032934: sterol binding1.75E-03
40GO:0008805: carbon-monoxide oxygenase activity1.75E-03
41GO:0005078: MAP-kinase scaffold activity1.75E-03
42GO:0030619: U1 snRNA binding1.75E-03
43GO:0050291: sphingosine N-acyltransferase activity1.75E-03
44GO:0004618: phosphoglycerate kinase activity1.75E-03
45GO:0019781: NEDD8 activating enzyme activity1.75E-03
46GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.90E-03
47GO:0070181: small ribosomal subunit rRNA binding2.90E-03
48GO:0005457: GDP-fucose transmembrane transporter activity2.90E-03
49GO:0015462: ATPase-coupled protein transmembrane transporter activity2.90E-03
50GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.91E-03
51GO:0044183: protein binding involved in protein folding3.06E-03
52GO:0015266: protein channel activity4.01E-03
53GO:0003999: adenine phosphoribosyltransferase activity4.23E-03
54GO:0005460: UDP-glucose transmembrane transporter activity4.23E-03
55GO:0004550: nucleoside diphosphate kinase activity4.23E-03
56GO:0047627: adenylylsulfatase activity4.23E-03
57GO:0017089: glycolipid transporter activity4.23E-03
58GO:0003743: translation initiation factor activity5.18E-03
59GO:0070628: proteasome binding5.72E-03
60GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances5.72E-03
61GO:0004576: oligosaccharyl transferase activity5.72E-03
62GO:0016004: phospholipase activator activity5.72E-03
63GO:0010011: auxin binding5.72E-03
64GO:0051861: glycolipid binding5.72E-03
65GO:0005459: UDP-galactose transmembrane transporter activity7.36E-03
66GO:0008641: small protein activating enzyme activity7.36E-03
67GO:0005275: amine transmembrane transporter activity7.36E-03
68GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity7.36E-03
69GO:0031386: protein tag7.36E-03
70GO:0031593: polyubiquitin binding9.16E-03
71GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity9.16E-03
72GO:0004656: procollagen-proline 4-dioxygenase activity1.11E-02
73GO:0051920: peroxiredoxin activity1.11E-02
74GO:0005338: nucleotide-sugar transmembrane transporter activity1.32E-02
75GO:0008235: metalloexopeptidase activity1.32E-02
76GO:0016209: antioxidant activity1.54E-02
77GO:0008515: sucrose transmembrane transporter activity2.81E-02
78GO:0004129: cytochrome-c oxidase activity2.81E-02
79GO:0046961: proton-transporting ATPase activity, rotational mechanism2.81E-02
80GO:0008794: arsenate reductase (glutaredoxin) activity2.81E-02
81GO:0051119: sugar transmembrane transporter activity4.00E-02
82GO:0043130: ubiquitin binding4.66E-02
83GO:0005528: FK506 binding4.66E-02
84GO:0031418: L-ascorbic acid binding4.66E-02
85GO:0051087: chaperone binding4.99E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0022626: cytosolic ribosome9.31E-132
3GO:0005840: ribosome4.76E-130
4GO:0022625: cytosolic large ribosomal subunit1.34E-124
5GO:0022627: cytosolic small ribosomal subunit3.58E-86
6GO:0005829: cytosol3.98E-46
7GO:0005730: nucleolus3.61E-44
8GO:0005737: cytoplasm4.92E-38
9GO:0009506: plasmodesma1.02E-28
10GO:0015934: large ribosomal subunit4.34E-21
11GO:0005774: vacuolar membrane3.35E-20
12GO:0016020: membrane4.69E-13
13GO:0005773: vacuole1.62E-12
14GO:0015935: small ribosomal subunit1.90E-10
15GO:0000502: proteasome complex8.85E-09
16GO:0005732: small nucleolar ribonucleoprotein complex7.91E-08
17GO:0005618: cell wall8.26E-08
18GO:0005839: proteasome core complex2.80E-07
19GO:0005665: DNA-directed RNA polymerase II, core complex8.20E-07
20GO:0000419: DNA-directed RNA polymerase V complex3.23E-06
21GO:0005742: mitochondrial outer membrane translocase complex4.00E-06
22GO:0005736: DNA-directed RNA polymerase I complex6.23E-06
23GO:0009507: chloroplast6.79E-06
24GO:0005666: DNA-directed RNA polymerase III complex9.27E-06
25GO:0071011: precatalytic spliceosome9.27E-06
26GO:0000418: DNA-directed RNA polymerase IV complex1.33E-05
27GO:0071013: catalytic step 2 spliceosome1.84E-05
28GO:0019013: viral nucleocapsid3.26E-05
29GO:0034719: SMN-Sm protein complex8.78E-05
30GO:0005685: U1 snRNP1.59E-04
31GO:0005886: plasma membrane1.63E-04
32GO:0015030: Cajal body2.04E-04
33GO:0005681: spliceosomal complex2.23E-04
34GO:0005682: U5 snRNP3.01E-04
35GO:0097526: spliceosomal tri-snRNP complex4.48E-04
36GO:0005687: U4 snRNP4.48E-04
37GO:0005750: mitochondrial respiratory chain complex III5.29E-04
38GO:0031428: box C/D snoRNP complex6.21E-04
39GO:0005758: mitochondrial intermembrane space8.10E-04
40GO:0030686: 90S preribosome8.10E-04
41GO:0005689: U12-type spliceosomal complex8.20E-04
42GO:0070469: respiratory chain9.18E-04
43GO:0005741: mitochondrial outer membrane1.04E-03
44GO:0005688: U6 snRNP1.30E-03
45GO:0019773: proteasome core complex, alpha-subunit complex1.59E-03
46GO:0046540: U4/U6 x U5 tri-snRNP complex1.59E-03
47GO:0046930: pore complex1.59E-03
48GO:0071010: prespliceosome1.75E-03
49GO:0031415: NatA complex1.75E-03
50GO:0005783: endoplasmic reticulum1.77E-03
51GO:0005622: intracellular2.00E-03
52GO:0005740: mitochondrial envelope2.65E-03
53GO:0005686: U2 snRNP2.65E-03
54GO:0034715: pICln-Sm protein complex2.90E-03
55GO:0005853: eukaryotic translation elongation factor 1 complex2.90E-03
56GO:0008541: proteasome regulatory particle, lid subcomplex3.06E-03
57GO:0032040: small-subunit processome3.52E-03
58GO:0033180: proton-transporting V-type ATPase, V1 domain4.23E-03
59GO:1990726: Lsm1-7-Pat1 complex4.23E-03
60GO:0016471: vacuolar proton-transporting V-type ATPase complex5.72E-03
61GO:0008250: oligosaccharyltransferase complex7.36E-03
62GO:0030904: retromer complex9.16E-03
63GO:0016282: eukaryotic 43S preinitiation complex9.16E-03
64GO:0000974: Prp19 complex9.16E-03
65GO:0005771: multivesicular body9.16E-03
66GO:0000243: commitment complex9.16E-03
67GO:0005744: mitochondrial inner membrane presequence translocase complex1.00E-02
68GO:0033290: eukaryotic 48S preinitiation complex1.11E-02
69GO:0016272: prefoldin complex1.11E-02
70GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.54E-02
71GO:0000421: autophagosome membrane1.54E-02
72GO:0071004: U2-type prespliceosome1.54E-02
73GO:0045273: respiratory chain complex II1.54E-02
74GO:0005747: mitochondrial respiratory chain complex I2.07E-02
75GO:0005743: mitochondrial inner membrane2.13E-02
76GO:0016604: nuclear body2.27E-02
77GO:0030529: intracellular ribonucleoprotein complex2.29E-02
78GO:0005788: endoplasmic reticulum lumen2.42E-02
79GO:0005852: eukaryotic translation initiation factor 3 complex2.81E-02
80GO:0031307: integral component of mitochondrial outer membrane3.09E-02
81GO:0005759: mitochondrial matrix4.41E-02
82GO:0045271: respiratory chain complex I4.99E-02
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Gene type



Gene DE type