Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G43540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0008298: intracellular mRNA localization0.00E+00
2GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
5GO:0070125: mitochondrial translational elongation0.00E+00
6GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
7GO:2000505: regulation of energy homeostasis0.00E+00
8GO:1901918: negative regulation of exoribonuclease activity0.00E+00
9GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
10GO:0098586: cellular response to virus0.00E+00
11GO:0017009: protein-phycocyanobilin linkage0.00E+00
12GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
15GO:0042820: vitamin B6 catabolic process0.00E+00
16GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
17GO:0015882: L-ascorbic acid transport0.00E+00
18GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
19GO:0006114: glycerol biosynthetic process0.00E+00
20GO:0015979: photosynthesis4.74E-12
21GO:0010027: thylakoid membrane organization1.16E-08
22GO:0018298: protein-chromophore linkage3.17E-08
23GO:0090391: granum assembly6.58E-08
24GO:1902326: positive regulation of chlorophyll biosynthetic process7.13E-06
25GO:0009642: response to light intensity1.61E-05
26GO:0006790: sulfur compound metabolic process8.48E-05
27GO:0009765: photosynthesis, light harvesting9.53E-05
28GO:0006021: inositol biosynthetic process9.53E-05
29GO:0010207: photosystem II assembly1.24E-04
30GO:0046854: phosphatidylinositol phosphorylation1.47E-04
31GO:0010236: plastoquinone biosynthetic process1.48E-04
32GO:0009793: embryo development ending in seed dormancy1.77E-04
33GO:0046855: inositol phosphate dephosphorylation2.12E-04
34GO:0009768: photosynthesis, light harvesting in photosystem I2.31E-04
35GO:0009658: chloroplast organization2.80E-04
36GO:0010189: vitamin E biosynthetic process2.85E-04
37GO:0010196: nonphotochemical quenching3.69E-04
38GO:0071277: cellular response to calcium ion3.99E-04
39GO:0000481: maturation of 5S rRNA3.99E-04
40GO:0006474: N-terminal protein amino acid acetylation3.99E-04
41GO:0017198: N-terminal peptidyl-serine acetylation3.99E-04
42GO:0042371: vitamin K biosynthetic process3.99E-04
43GO:0065002: intracellular protein transmembrane transport3.99E-04
44GO:0043686: co-translational protein modification3.99E-04
45GO:0006436: tryptophanyl-tRNA aminoacylation3.99E-04
46GO:0043007: maintenance of rDNA3.99E-04
47GO:0010028: xanthophyll cycle3.99E-04
48GO:0034337: RNA folding3.99E-04
49GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.99E-04
50GO:0006419: alanyl-tRNA aminoacylation3.99E-04
51GO:0000476: maturation of 4.5S rRNA3.99E-04
52GO:0009443: pyridoxal 5'-phosphate salvage3.99E-04
53GO:0018002: N-terminal peptidyl-glutamic acid acetylation3.99E-04
54GO:0000967: rRNA 5'-end processing3.99E-04
55GO:0043953: protein transport by the Tat complex3.99E-04
56GO:0006475: internal protein amino acid acetylation3.99E-04
57GO:0010114: response to red light4.48E-04
58GO:0048564: photosystem I assembly4.62E-04
59GO:0071482: cellular response to light stimulus5.64E-04
60GO:0009657: plastid organization5.64E-04
61GO:0010206: photosystem II repair6.76E-04
62GO:0006729: tetrahydrobiopterin biosynthetic process8.66E-04
63GO:0006568: tryptophan metabolic process8.66E-04
64GO:0034470: ncRNA processing8.66E-04
65GO:0010275: NAD(P)H dehydrogenase complex assembly8.66E-04
66GO:0046741: transport of virus in host, tissue to tissue8.66E-04
67GO:0080005: photosystem stoichiometry adjustment8.66E-04
68GO:0030187: melatonin biosynthetic process8.66E-04
69GO:0006432: phenylalanyl-tRNA aminoacylation8.66E-04
70GO:0018026: peptidyl-lysine monomethylation8.66E-04
71GO:0034755: iron ion transmembrane transport8.66E-04
72GO:0006435: threonyl-tRNA aminoacylation8.66E-04
73GO:0000256: allantoin catabolic process8.66E-04
74GO:0009773: photosynthetic electron transport in photosystem I1.07E-03
75GO:0043085: positive regulation of catalytic activity1.07E-03
76GO:0015995: chlorophyll biosynthetic process1.30E-03
77GO:0009767: photosynthetic electron transport chain1.38E-03
78GO:0016311: dephosphorylation1.39E-03
79GO:0071492: cellular response to UV-A1.40E-03
80GO:0005977: glycogen metabolic process1.40E-03
81GO:0009405: pathogenesis1.40E-03
82GO:0010136: ureide catabolic process1.40E-03
83GO:0006013: mannose metabolic process1.40E-03
84GO:0010020: chloroplast fission1.56E-03
85GO:0009637: response to blue light2.00E-03
86GO:0043572: plastid fission2.03E-03
87GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.03E-03
88GO:2001141: regulation of RNA biosynthetic process2.03E-03
89GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.03E-03
90GO:0006020: inositol metabolic process2.03E-03
91GO:0009052: pentose-phosphate shunt, non-oxidative branch2.03E-03
92GO:0006145: purine nucleobase catabolic process2.03E-03
93GO:0046739: transport of virus in multicellular host2.03E-03
94GO:0034599: cellular response to oxidative stress2.12E-03
95GO:0010021: amylopectin biosynthetic process2.73E-03
96GO:0071486: cellular response to high light intensity2.73E-03
97GO:0006109: regulation of carbohydrate metabolic process2.73E-03
98GO:0015994: chlorophyll metabolic process2.73E-03
99GO:0006546: glycine catabolic process2.73E-03
100GO:0009644: response to high light intensity3.06E-03
101GO:0031365: N-terminal protein amino acid modification3.49E-03
102GO:0016123: xanthophyll biosynthetic process3.49E-03
103GO:0016558: protein import into peroxisome matrix3.49E-03
104GO:0016120: carotene biosynthetic process3.49E-03
105GO:0016117: carotenoid biosynthetic process3.69E-03
106GO:0006364: rRNA processing4.05E-03
107GO:0006662: glycerol ether metabolic process4.30E-03
108GO:0009643: photosynthetic acclimation4.32E-03
109GO:0042549: photosystem II stabilization4.32E-03
110GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.32E-03
111GO:0006655: phosphatidylglycerol biosynthetic process4.32E-03
112GO:0042793: transcription from plastid promoter4.32E-03
113GO:0009117: nucleotide metabolic process4.32E-03
114GO:0055085: transmembrane transport4.82E-03
115GO:0042372: phylloquinone biosynthetic process5.20E-03
116GO:1901259: chloroplast rRNA processing5.20E-03
117GO:0000302: response to reactive oxygen species5.31E-03
118GO:0009772: photosynthetic electron transport in photosystem II6.15E-03
119GO:0009645: response to low light intensity stimulus6.15E-03
120GO:0006400: tRNA modification6.15E-03
121GO:0006875: cellular metal ion homeostasis7.15E-03
122GO:0009231: riboflavin biosynthetic process7.15E-03
123GO:0016559: peroxisome fission7.15E-03
124GO:0030091: protein repair7.15E-03
125GO:0009704: de-etiolation7.15E-03
126GO:0032508: DNA duplex unwinding7.15E-03
127GO:0080167: response to karrikin7.54E-03
128GO:0032544: plastid translation8.21E-03
129GO:0017004: cytochrome complex assembly8.21E-03
130GO:0098656: anion transmembrane transport9.31E-03
131GO:0009821: alkaloid biosynthetic process9.31E-03
132GO:0090333: regulation of stomatal closure9.31E-03
133GO:0010218: response to far red light1.11E-02
134GO:0007568: aging1.17E-02
135GO:0019684: photosynthesis, light reaction1.29E-02
136GO:0009089: lysine biosynthetic process via diaminopimelate1.29E-02
137GO:0072593: reactive oxygen species metabolic process1.29E-02
138GO:0006879: cellular iron ion homeostasis1.29E-02
139GO:0006352: DNA-templated transcription, initiation1.29E-02
140GO:0006415: translational termination1.29E-02
141GO:0016024: CDP-diacylglycerol biosynthetic process1.43E-02
142GO:0045037: protein import into chloroplast stroma1.43E-02
143GO:0006006: glucose metabolic process1.56E-02
144GO:0019253: reductive pentose-phosphate cycle1.70E-02
145GO:0019853: L-ascorbic acid biosynthetic process1.84E-02
146GO:0006833: water transport1.99E-02
147GO:0042254: ribosome biogenesis2.28E-02
148GO:0006825: copper ion transport2.30E-02
149GO:0051302: regulation of cell division2.30E-02
150GO:0019953: sexual reproduction2.30E-02
151GO:0008299: isoprenoid biosynthetic process2.30E-02
152GO:0006418: tRNA aminoacylation for protein translation2.30E-02
153GO:0010431: seed maturation2.46E-02
154GO:0019915: lipid storage2.46E-02
155GO:0061077: chaperone-mediated protein folding2.46E-02
156GO:0055114: oxidation-reduction process2.56E-02
157GO:0006012: galactose metabolic process2.79E-02
158GO:0009735: response to cytokinin2.80E-02
159GO:0009561: megagametogenesis2.96E-02
160GO:0009416: response to light stimulus3.19E-02
161GO:0006396: RNA processing3.27E-02
162GO:0034220: ion transmembrane transport3.32E-02
163GO:0000413: protein peptidyl-prolyl isomerization3.32E-02
164GO:0048868: pollen tube development3.50E-02
165GO:0045454: cell redox homeostasis3.64E-02
166GO:0019252: starch biosynthetic process3.87E-02
167GO:0008654: phospholipid biosynthetic process3.87E-02
168GO:0055072: iron ion homeostasis3.87E-02
169GO:0006635: fatty acid beta-oxidation4.07E-02
170GO:0002229: defense response to oomycetes4.07E-02
171GO:0010193: response to ozone4.07E-02
172GO:0016032: viral process4.26E-02
173GO:0032259: methylation4.46E-02
174GO:0009790: embryo development4.62E-02
175GO:0009567: double fertilization forming a zygote and endosperm4.66E-02
RankGO TermAdjusted P value
1GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
2GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0050281: serine-glyoxylate transaminase activity0.00E+00
5GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
6GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
7GO:0043136: glycerol-3-phosphatase activity0.00E+00
8GO:0000121: glycerol-1-phosphatase activity0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0019144: ADP-sugar diphosphatase activity0.00E+00
11GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
12GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
13GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
14GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
15GO:0010276: phytol kinase activity0.00E+00
16GO:0045435: lycopene epsilon cyclase activity0.00E+00
17GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
18GO:0004760: serine-pyruvate transaminase activity0.00E+00
19GO:0042623: ATPase activity, coupled0.00E+00
20GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
21GO:0015229: L-ascorbic acid transporter activity0.00E+00
22GO:0016168: chlorophyll binding1.43E-08
23GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.76E-06
24GO:0052832: inositol monophosphate 3-phosphatase activity7.13E-06
25GO:0008934: inositol monophosphate 1-phosphatase activity7.13E-06
26GO:0052833: inositol monophosphate 4-phosphatase activity7.13E-06
27GO:0022891: substrate-specific transmembrane transporter activity2.18E-05
28GO:0070402: NADPH binding2.48E-05
29GO:0008080: N-acetyltransferase activity4.16E-05
30GO:0043495: protein anchor9.53E-05
31GO:0031072: heat shock protein binding1.03E-04
32GO:0031409: pigment binding1.73E-04
33GO:0046872: metal ion binding1.81E-04
34GO:0005528: FK506 binding2.01E-04
35GO:0019899: enzyme binding3.69E-04
36GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.99E-04
37GO:0004830: tryptophan-tRNA ligase activity3.99E-04
38GO:0010347: L-galactose-1-phosphate phosphatase activity3.99E-04
39GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.99E-04
40GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.99E-04
41GO:0004425: indole-3-glycerol-phosphate synthase activity3.99E-04
42GO:1990189: peptide-serine-N-acetyltransferase activity3.99E-04
43GO:0080042: ADP-glucose pyrophosphohydrolase activity3.99E-04
44GO:0004813: alanine-tRNA ligase activity3.99E-04
45GO:0004008: copper-exporting ATPase activity3.99E-04
46GO:1990190: peptide-glutamate-N-acetyltransferase activity3.99E-04
47GO:0042586: peptide deformylase activity3.99E-04
48GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.99E-04
49GO:0015088: copper uptake transmembrane transporter activity3.99E-04
50GO:0016853: isomerase activity5.59E-04
51GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.69E-04
52GO:0005381: iron ion transmembrane transporter activity7.98E-04
53GO:0047746: chlorophyllase activity8.66E-04
54GO:0080041: ADP-ribose pyrophosphohydrolase activity8.66E-04
55GO:0009977: proton motive force dependent protein transmembrane transporter activity8.66E-04
56GO:0004047: aminomethyltransferase activity8.66E-04
57GO:0004829: threonine-tRNA ligase activity8.66E-04
58GO:0019172: glyoxalase III activity8.66E-04
59GO:0019156: isoamylase activity8.66E-04
60GO:0004826: phenylalanine-tRNA ligase activity8.66E-04
61GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.66E-04
62GO:0019200: carbohydrate kinase activity8.66E-04
63GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.66E-04
64GO:0008047: enzyme activator activity9.28E-04
65GO:0000049: tRNA binding1.22E-03
66GO:0030267: glyoxylate reductase (NADP) activity1.40E-03
67GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.40E-03
68GO:0003913: DNA photolyase activity1.40E-03
69GO:0004148: dihydrolipoyl dehydrogenase activity1.40E-03
70GO:0004751: ribose-5-phosphate isomerase activity1.40E-03
71GO:0035529: NADH pyrophosphatase activity2.03E-03
72GO:0004792: thiosulfate sulfurtransferase activity2.03E-03
73GO:0016149: translation release factor activity, codon specific2.03E-03
74GO:0016851: magnesium chelatase activity2.03E-03
75GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.73E-03
76GO:0004659: prenyltransferase activity2.73E-03
77GO:0016279: protein-lysine N-methyltransferase activity2.73E-03
78GO:0001053: plastid sigma factor activity2.73E-03
79GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.73E-03
80GO:0008453: alanine-glyoxylate transaminase activity2.73E-03
81GO:0004045: aminoacyl-tRNA hydrolase activity2.73E-03
82GO:0016987: sigma factor activity2.73E-03
83GO:0051537: 2 iron, 2 sulfur cluster binding3.06E-03
84GO:0047134: protein-disulfide reductase activity3.69E-03
85GO:0042802: identical protein binding4.02E-03
86GO:0004605: phosphatidate cytidylyltransferase activity4.32E-03
87GO:0004130: cytochrome-c peroxidase activity4.32E-03
88GO:0004556: alpha-amylase activity4.32E-03
89GO:0004462: lactoylglutathione lyase activity4.32E-03
90GO:0016462: pyrophosphatase activity4.32E-03
91GO:0016688: L-ascorbate peroxidase activity4.32E-03
92GO:0004791: thioredoxin-disulfide reductase activity4.62E-03
93GO:0004559: alpha-mannosidase activity5.20E-03
94GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.20E-03
95GO:0004017: adenylate kinase activity5.20E-03
96GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.20E-03
97GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.05E-03
98GO:0009881: photoreceptor activity6.15E-03
99GO:0051082: unfolded protein binding6.36E-03
100GO:0004034: aldose 1-epimerase activity7.15E-03
101GO:0043022: ribosome binding7.15E-03
102GO:0004033: aldo-keto reductase (NADP) activity7.15E-03
103GO:0005375: copper ion transmembrane transporter activity8.21E-03
104GO:0019843: rRNA binding8.47E-03
105GO:0003747: translation release factor activity9.31E-03
106GO:0016844: strictosidine synthase activity1.05E-02
107GO:0003746: translation elongation factor activity1.28E-02
108GO:0003993: acid phosphatase activity1.34E-02
109GO:0005315: inorganic phosphate transmembrane transporter activity1.56E-02
110GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.56E-02
111GO:0005198: structural molecule activity1.86E-02
112GO:0051287: NAD binding2.00E-02
113GO:0004857: enzyme inhibitor activity2.14E-02
114GO:0043424: protein histidine kinase binding2.30E-02
115GO:0004176: ATP-dependent peptidase activity2.46E-02
116GO:0031625: ubiquitin protein ligase binding2.47E-02
117GO:0003727: single-stranded RNA binding2.96E-02
118GO:0008514: organic anion transmembrane transporter activity2.96E-02
119GO:0003756: protein disulfide isomerase activity2.96E-02
120GO:0004812: aminoacyl-tRNA ligase activity3.14E-02
121GO:0015035: protein disulfide oxidoreductase activity3.27E-02
122GO:0016746: transferase activity, transferring acyl groups3.27E-02
123GO:0048038: quinone binding4.07E-02
124GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.08E-02
125GO:0003924: GTPase activity4.70E-02
126GO:0008483: transaminase activity4.86E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0010368: chloroplast isoamylase complex0.00E+00
4GO:0009515: granal stacked thylakoid0.00E+00
5GO:0009507: chloroplast6.50E-89
6GO:0009535: chloroplast thylakoid membrane9.89E-43
7GO:0009570: chloroplast stroma1.60E-33
8GO:0009534: chloroplast thylakoid1.88E-31
9GO:0009941: chloroplast envelope3.24E-23
10GO:0009543: chloroplast thylakoid lumen6.35E-17
11GO:0009579: thylakoid9.24E-16
12GO:0031977: thylakoid lumen1.60E-13
13GO:0009523: photosystem II8.42E-08
14GO:0031969: chloroplast membrane1.21E-06
15GO:0010287: plastoglobule3.55E-06
16GO:0030095: chloroplast photosystem II1.24E-04
17GO:0009706: chloroplast inner membrane2.11E-04
18GO:0009654: photosystem II oxygen evolving complex2.31E-04
19GO:0031361: integral component of thylakoid membrane3.99E-04
20GO:0009782: photosystem I antenna complex3.99E-04
21GO:0009538: photosystem I reaction center4.62E-04
22GO:0019898: extrinsic component of membrane6.12E-04
23GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.76E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex8.66E-04
25GO:0031415: NatA complex8.66E-04
26GO:0009508: plastid chromosome1.38E-03
27GO:0033281: TAT protein transport complex1.40E-03
28GO:0010007: magnesium chelatase complex1.40E-03
29GO:0009707: chloroplast outer membrane1.48E-03
30GO:0030076: light-harvesting complex1.75E-03
31GO:0042646: plastid nucleoid2.03E-03
32GO:0042651: thylakoid membrane2.38E-03
33GO:0031897: Tic complex2.73E-03
34GO:0009522: photosystem I4.62E-03
35GO:0009533: chloroplast stromal thylakoid6.15E-03
36GO:0009536: plastid6.37E-03
37GO:0005778: peroxisomal membrane6.84E-03
38GO:0009295: nucleoid6.84E-03
39GO:0042644: chloroplast nucleoid9.31E-03
40GO:0005759: mitochondrial matrix1.13E-02
41GO:0012511: monolayer-surrounded lipid storage body1.29E-02
42GO:0032040: small-subunit processome1.43E-02
43GO:0016021: integral component of membrane1.84E-02
44GO:0005840: ribosome3.61E-02
45GO:0005623: cell4.08E-02
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Gene type



Gene DE type