co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G43520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019428: allantoin biosynthetic process	0.00E+00
2	GO:0006721: terpenoid metabolic process	0.00E+00
3	GO:0006069: ethanol oxidation	0.00E+00
4	GO:0001881: receptor recycling	0.00E+00
5	GO:0006592: ornithine biosynthetic process	0.00E+00
6	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
7	GO:0051776: detection of redox state	0.00E+00
8	GO:0046292: formaldehyde metabolic process	0.00E+00
9	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.14E-10
10	GO:0009853: photorespiration	2.46E-09
11	GO:0006511: ubiquitin-dependent protein catabolic process	3.94E-06
12	GO:0055114: oxidation-reduction process	5.86E-06
13	GO:0045454: cell redox homeostasis	1.95E-05
14	GO:0008333: endosome to lysosome transport	2.39E-05
15	GO:0015991: ATP hydrolysis coupled proton transport	3.37E-05
16	GO:0015986: ATP synthesis coupled proton transport	4.54E-05
17	GO:0051603: proteolysis involved in cellular protein catabolic process	1.03E-04
18	GO:0006555: methionine metabolic process	2.05E-04
19	GO:0019509: L-methionine salvage from methylthioadenosine	2.77E-04
20	GO:0006012: galactose metabolic process	3.23E-04
21	GO:0006007: glucose catabolic process	3.92E-04
22	GO:0031468: nuclear envelope reassembly	3.92E-04
23	GO:0044376: RNA polymerase II complex import to nucleus	3.92E-04
24	GO:0010265: SCF complex assembly	3.92E-04
25	GO:0006144: purine nucleobase metabolic process	3.92E-04
26	GO:0001560: regulation of cell growth by extracellular stimulus	3.92E-04
27	GO:0019628: urate catabolic process	3.92E-04
28	GO:0016487: farnesol metabolic process	3.92E-04
29	GO:0009240: isopentenyl diphosphate biosynthetic process	3.92E-04
30	GO:1990022: RNA polymerase III complex localization to nucleus	3.92E-04
31	GO:0046685: response to arsenic-containing substance	6.57E-04
32	GO:0006914: autophagy	8.20E-04
33	GO:0019483: beta-alanine biosynthetic process	8.49E-04
34	GO:0080026: response to indolebutyric acid	8.49E-04
35	GO:0006432: phenylalanyl-tRNA aminoacylation	8.49E-04
36	GO:0045905: positive regulation of translational termination	8.49E-04
37	GO:0050992: dimethylallyl diphosphate biosynthetic process	8.49E-04
38	GO:0045901: positive regulation of translational elongation	8.49E-04
39	GO:0046939: nucleotide phosphorylation	8.49E-04
40	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	8.49E-04
41	GO:0006452: translational frameshifting	8.49E-04
42	GO:0006212: uracil catabolic process	8.49E-04
43	GO:0043255: regulation of carbohydrate biosynthetic process	8.49E-04
44	GO:0016925: protein sumoylation	1.19E-03
45	GO:0006807: nitrogen compound metabolic process	1.34E-03
46	GO:0046417: chorismate metabolic process	1.38E-03
47	GO:0015940: pantothenate biosynthetic process	1.38E-03
48	GO:0045793: positive regulation of cell size	1.38E-03
49	GO:0006760: folic acid-containing compound metabolic process	1.38E-03
50	GO:0007034: vacuolar transport	1.51E-03
51	GO:0010043: response to zinc ion	1.71E-03
52	GO:0009113: purine nucleobase biosynthetic process	1.99E-03
53	GO:0006164: purine nucleotide biosynthetic process	1.99E-03
54	GO:1901332: negative regulation of lateral root development	1.99E-03
55	GO:0006168: adenine salvage	1.99E-03
56	GO:0051289: protein homotetramerization	1.99E-03
57	GO:0080024: indolebutyric acid metabolic process	1.99E-03
58	GO:0032877: positive regulation of DNA endoreduplication	1.99E-03
59	GO:0006166: purine ribonucleoside salvage	1.99E-03
60	GO:0006107: oxaloacetate metabolic process	1.99E-03
61	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.99E-03
62	GO:0006487: protein N-linked glycosylation	2.10E-03
63	GO:0015992: proton transport	2.54E-03
64	GO:0009926: auxin polar transport	2.66E-03
65	GO:0032366: intracellular sterol transport	2.67E-03
66	GO:0010109: regulation of photosynthesis	2.67E-03
67	GO:0051781: positive regulation of cell division	2.67E-03
68	GO:0010387: COP9 signalosome assembly	2.67E-03
69	GO:0009229: thiamine diphosphate biosynthetic process	3.42E-03
70	GO:0044209: AMP salvage	3.42E-03
71	GO:0018344: protein geranylgeranylation	3.42E-03
72	GO:0042147: retrograde transport, endosome to Golgi	3.58E-03
73	GO:0046686: response to cadmium ion	3.62E-03
74	GO:0000413: protein peptidyl-prolyl isomerization	3.87E-03
75	GO:0006662: glycerol ether metabolic process	4.17E-03
76	GO:0009228: thiamine biosynthetic process	4.23E-03
77	GO:0009117: nucleotide metabolic process	4.23E-03
78	GO:0002238: response to molecule of fungal origin	4.23E-03
79	GO:0006623: protein targeting to vacuole	4.81E-03
80	GO:0009826: unidimensional cell growth	4.89E-03
81	GO:0009612: response to mechanical stimulus	5.09E-03
82	GO:0022904: respiratory electron transport chain	6.02E-03
83	GO:0050790: regulation of catalytic activity	6.02E-03
84	GO:0010044: response to aluminum ion	6.02E-03
85	GO:0000338: protein deneddylation	6.02E-03
86	GO:0010286: heat acclimation	6.64E-03
87	GO:0009690: cytokinin metabolic process	7.00E-03
88	GO:0006506: GPI anchor biosynthetic process	7.00E-03
89	GO:0000028: ribosomal small subunit assembly	7.00E-03
90	GO:0048658: anther wall tapetum development	7.00E-03
91	GO:0009615: response to virus	7.46E-03
92	GO:0006526: arginine biosynthetic process	8.03E-03
93	GO:0043562: cellular response to nitrogen levels	8.03E-03
94	GO:0022900: electron transport chain	8.03E-03
95	GO:0009735: response to cytokinin	8.17E-03
96	GO:0006950: response to stress	8.80E-03
97	GO:0080144: amino acid homeostasis	9.12E-03
98	GO:0006754: ATP biosynthetic process	9.12E-03
99	GO:0006189: 'de novo' IMP biosynthetic process	9.12E-03
100	GO:0009821: alkaloid biosynthetic process	9.12E-03
101	GO:0000103: sulfate assimilation	1.14E-02
102	GO:0043069: negative regulation of programmed cell death	1.14E-02
103	GO:0006896: Golgi to vacuole transport	1.14E-02
104	GO:0072593: reactive oxygen species metabolic process	1.27E-02
105	GO:0009073: aromatic amino acid family biosynthetic process	1.27E-02
106	GO:0010015: root morphogenesis	1.27E-02
107	GO:0009751: response to salicylic acid	1.27E-02
108	GO:0034599: cellular response to oxidative stress	1.30E-02
109	GO:0006099: tricarboxylic acid cycle	1.30E-02
110	GO:0002213: defense response to insect	1.40E-02
111	GO:0006108: malate metabolic process	1.53E-02
112	GO:0006006: glucose metabolic process	1.53E-02
113	GO:0002237: response to molecule of bacterial origin	1.66E-02
114	GO:0010039: response to iron ion	1.81E-02
115	GO:0007030: Golgi organization	1.81E-02
116	GO:0006071: glycerol metabolic process	1.95E-02
117	GO:2000377: regulation of reactive oxygen species metabolic process	2.10E-02
118	GO:0009116: nucleoside metabolic process	2.10E-02
119	GO:0051302: regulation of cell division	2.25E-02
120	GO:0019953: sexual reproduction	2.25E-02
121	GO:0008299: isoprenoid biosynthetic process	2.25E-02
122	GO:0010431: seed maturation	2.41E-02
123	GO:0061077: chaperone-mediated protein folding	2.41E-02
124	GO:0005975: carbohydrate metabolic process	2.50E-02
125	GO:0006096: glycolytic process	2.56E-02
126	GO:0019748: secondary metabolic process	2.57E-02
127	GO:0016226: iron-sulfur cluster assembly	2.57E-02
128	GO:0016569: covalent chromatin modification	2.90E-02
129	GO:0010089: xylem development	2.90E-02
130	GO:0009555: pollen development	3.05E-02
131	GO:0006979: response to oxidative stress	3.22E-02
132	GO:0080022: primary root development	3.25E-02
133	GO:0034220: ion transmembrane transport	3.25E-02
134	GO:0010051: xylem and phloem pattern formation	3.25E-02
135	GO:0010118: stomatal movement	3.25E-02
136	GO:0061025: membrane fusion	3.61E-02
137	GO:0006886: intracellular protein transport	3.64E-02
138	GO:0080156: mitochondrial mRNA modification	3.98E-02
139	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.98E-02
140	GO:0006508: proteolysis	4.04E-02
141	GO:0032259: methylation	4.30E-02
142	GO:0010090: trichome morphogenesis	4.36E-02
143	GO:0030163: protein catabolic process	4.36E-02
144	GO:0009408: response to heat	4.53E-02
145	GO:0009828: plant-type cell wall loosening	4.56E-02
146	GO:0015031: protein transport	4.70E-02
147	GO:0009651: response to salt stress	4.81E-02
148	GO:0051607: defense response to virus	4.96E-02
149	GO:0000910: cytokinesis	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
2	GO:0050334: thiaminase activity	0.00E+00
3	GO:0047886: farnesol dehydrogenase activity	0.00E+00
4	GO:0008777: acetylornithine deacetylase activity	0.00E+00
5	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
6	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
7	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
8	GO:0003837: beta-ureidopropionase activity	0.00E+00
9	GO:0050152: omega-amidase activity	0.00E+00
10	GO:0004637: phosphoribosylamine-glycine ligase activity	0.00E+00
11	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
12	GO:0004298: threonine-type endopeptidase activity	2.13E-16
13	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.47E-09
14	GO:0008233: peptidase activity	6.16E-09
15	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.66E-06
16	GO:0008794: arsenate reductase (glutaredoxin) activity	1.76E-06
17	GO:0004034: aldose 1-epimerase activity	1.53E-05
18	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.39E-05
19	GO:0015035: protein disulfide oxidoreductase activity	2.50E-05
20	GO:0035529: NADH pyrophosphatase activity	5.22E-05
21	GO:0004129: cytochrome-c oxidase activity	6.53E-05
22	GO:0004576: oligosaccharyl transferase activity	9.22E-05
23	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.43E-04
24	GO:0031386: protein tag	1.43E-04
25	GO:0050897: cobalt ion binding	2.43E-04
26	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.58E-04
27	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	3.92E-04
28	GO:0010209: vacuolar sorting signal binding	3.92E-04
29	GO:0019707: protein-cysteine S-acyltransferase activity	3.92E-04
30	GO:0019786: Atg8-specific protease activity	3.92E-04
31	GO:0030611: arsenate reductase activity	3.92E-04
32	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	3.92E-04
33	GO:0016853: isomerase activity	5.39E-04
34	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.44E-04
35	GO:0015078: hydrogen ion transmembrane transporter activity	5.48E-04
36	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.58E-04
37	GO:0047617: acyl-CoA hydrolase activity	7.75E-04
38	GO:0004106: chorismate mutase activity	8.49E-04
39	GO:0004826: phenylalanine-tRNA ligase activity	8.49E-04
40	GO:0019779: Atg8 activating enzyme activity	8.49E-04
41	GO:0019172: glyoxalase III activity	8.49E-04
42	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	8.49E-04
43	GO:0018708: thiol S-methyltransferase activity	8.49E-04
44	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.04E-03
45	GO:0016788: hydrolase activity, acting on ester bonds	1.24E-03
46	GO:0004022: alcohol dehydrogenase (NAD) activity	1.34E-03
47	GO:0004089: carbonate dehydratase activity	1.34E-03
48	GO:0004557: alpha-galactosidase activity	1.38E-03
49	GO:0004663: Rab geranylgeranyltransferase activity	1.38E-03
50	GO:0016805: dipeptidase activity	1.38E-03
51	GO:0052692: raffinose alpha-galactosidase activity	1.38E-03
52	GO:0008430: selenium binding	1.38E-03
53	GO:0005507: copper ion binding	1.77E-03
54	GO:0003999: adenine phosphoribosyltransferase activity	1.99E-03
55	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.99E-03
56	GO:0019201: nucleotide kinase activity	1.99E-03
57	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.67E-03
58	GO:0019776: Atg8 ligase activity	2.67E-03
59	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.67E-03
60	GO:0010011: auxin binding	2.67E-03
61	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.67E-03
62	GO:0051537: 2 iron, 2 sulfur cluster binding	2.94E-03
63	GO:0004040: amidase activity	3.42E-03
64	GO:0016651: oxidoreductase activity, acting on NAD(P)H	3.42E-03
65	GO:0047631: ADP-ribose diphosphatase activity	3.42E-03
66	GO:0047134: protein-disulfide reductase activity	3.58E-03
67	GO:0009055: electron carrier activity	3.95E-03
68	GO:0000210: NAD+ diphosphatase activity	4.23E-03
69	GO:0051117: ATPase binding	4.23E-03
70	GO:0004791: thioredoxin-disulfide reductase activity	4.49E-03
71	GO:0004017: adenylate kinase activity	5.09E-03
72	GO:0051920: peroxiredoxin activity	5.09E-03
73	GO:0008320: protein transmembrane transporter activity	6.02E-03
74	GO:0008235: metalloexopeptidase activity	6.02E-03
75	GO:0042162: telomeric DNA binding	6.02E-03
76	GO:0043022: ribosome binding	7.00E-03
77	GO:0004869: cysteine-type endopeptidase inhibitor activity	7.00E-03
78	GO:0016209: antioxidant activity	7.00E-03
79	GO:0035064: methylated histone binding	7.00E-03
80	GO:0046872: metal ion binding	7.80E-03
81	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	9.12E-03
82	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	9.12E-03
83	GO:0008889: glycerophosphodiester phosphodiesterase activity	9.12E-03
84	GO:0045309: protein phosphorylated amino acid binding	1.03E-02
85	GO:0016844: strictosidine synthase activity	1.03E-02
86	GO:0030145: manganese ion binding	1.13E-02
87	GO:0003697: single-stranded DNA binding	1.24E-02
88	GO:0019904: protein domain specific binding	1.27E-02
89	GO:0004177: aminopeptidase activity	1.27E-02
90	GO:0000049: tRNA binding	1.40E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	1.42E-02
92	GO:0031072: heat shock protein binding	1.53E-02
93	GO:0008266: poly(U) RNA binding	1.66E-02
94	GO:0003712: transcription cofactor activity	1.81E-02
95	GO:0051287: NAD binding	1.94E-02
96	GO:0004725: protein tyrosine phosphatase activity	1.95E-02
97	GO:0016787: hydrolase activity	1.95E-02
98	GO:0008168: methyltransferase activity	2.04E-02
99	GO:0003714: transcription corepressor activity	2.10E-02
100	GO:0051536: iron-sulfur cluster binding	2.10E-02
101	GO:0043130: ubiquitin binding	2.10E-02
102	GO:0005528: FK506 binding	2.10E-02
103	GO:0008234: cysteine-type peptidase activity	2.40E-02
104	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.64E-02
105	GO:0004527: exonuclease activity	3.42E-02
106	GO:0050662: coenzyme binding	3.61E-02
107	GO:0004872: receptor activity	3.79E-02
108	GO:0004197: cysteine-type endopeptidase activity	4.17E-02
109	GO:0008237: metallopeptidase activity	4.76E-02
110	GO:0016491: oxidoreductase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0000274: mitochondrial proton-transporting ATP synthase, stator stalk	0.00E+00
2	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
3	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
4	GO:0005747: mitochondrial respiratory chain complex I	1.21E-21
5	GO:0005839: proteasome core complex	2.13E-16
6	GO:0045271: respiratory chain complex I	1.23E-12
7	GO:0000502: proteasome complex	1.26E-12
8	GO:0005829: cytosol	2.00E-11
9	GO:0005773: vacuole	8.02E-10
10	GO:0019773: proteasome core complex, alpha-subunit complex	3.31E-09
11	GO:0031966: mitochondrial membrane	1.87E-08
12	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.25E-07
13	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	8.68E-07
14	GO:0005774: vacuolar membrane	4.33E-06
15	GO:0000421: autophagosome membrane	1.53E-05
16	GO:0005783: endoplasmic reticulum	5.98E-05
17	GO:0009507: chloroplast	9.37E-05
18	GO:0005750: mitochondrial respiratory chain complex III	1.19E-04
19	GO:0008250: oligosaccharyltransferase complex	1.43E-04
20	GO:0005758: mitochondrial intermembrane space	1.92E-04
21	GO:0005771: multivesicular body	2.05E-04
22	GO:0030904: retromer complex	2.05E-04
23	GO:0031410: cytoplasmic vesicle	2.86E-04
24	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	3.92E-04
25	GO:0019774: proteasome core complex, beta-subunit complex	3.92E-04
26	GO:0045273: respiratory chain complex II	4.48E-04
27	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	4.48E-04
28	GO:0005739: mitochondrion	6.68E-04
29	GO:0005697: telomerase holoenzyme complex	8.49E-04
30	GO:0000325: plant-type vacuole	1.71E-03
31	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.99E-03
32	GO:0000276: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	1.99E-03
33	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.99E-03
34	GO:0005775: vacuolar lumen	1.99E-03
35	GO:0031902: late endosome membrane	2.40E-03
36	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.67E-03
37	GO:0005776: autophagosome	2.67E-03
38	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.67E-03
39	GO:0005794: Golgi apparatus	3.27E-03
40	GO:0005746: mitochondrial respiratory chain	3.42E-03
41	GO:0005777: peroxisome	3.72E-03
42	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.23E-03
43	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	6.02E-03
44	GO:0005874: microtubule	6.83E-03
45	GO:0005737: cytoplasm	6.90E-03
46	GO:0005788: endoplasmic reticulum lumen	7.90E-03
47	GO:0008180: COP9 signalosome	9.12E-03
48	GO:0031090: organelle membrane	9.12E-03
49	GO:0005763: mitochondrial small ribosomal subunit	9.12E-03
50	GO:0005789: endoplasmic reticulum membrane	9.56E-03
51	GO:0030665: clathrin-coated vesicle membrane	1.03E-02
52	GO:0017119: Golgi transport complex	1.14E-02
53	GO:0005740: mitochondrial envelope	1.14E-02
54	GO:0005730: nucleolus	1.19E-02
55	GO:0009508: plastid chromosome	1.53E-02
56	GO:0005764: lysosome	1.66E-02
57	GO:0070469: respiratory chain	2.25E-02
58	GO:0016020: membrane	3.36E-02
59	GO:0005770: late endosome	3.42E-02
60	GO:0009570: chloroplast stroma	4.48E-02
61	GO:0032580: Golgi cisterna membrane	4.56E-02
62	GO:0009295: nucleoid	4.76E-02
63	GO:0005759: mitochondrial matrix	4.82E-02