co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G43250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
2	GO:0006862: nucleotide transport	0.00E+00
3	GO:0046967: cytosol to ER transport	0.00E+00
4	GO:0009268: response to pH	0.00E+00
5	GO:0071289: cellular response to nickel ion	0.00E+00
6	GO:0010200: response to chitin	2.09E-12
7	GO:0009611: response to wounding	5.39E-10
8	GO:0009695: jasmonic acid biosynthetic process	1.48E-06
9	GO:0034440: lipid oxidation	3.05E-05
10	GO:0009694: jasmonic acid metabolic process	3.05E-05
11	GO:0031408: oxylipin biosynthetic process	6.47E-05
12	GO:0080086: stamen filament development	1.00E-04
13	GO:0048653: anther development	1.22E-04
14	GO:0045010: actin nucleation	1.70E-04
15	GO:0051180: vitamin transport	2.04E-04
16	GO:0007229: integrin-mediated signaling pathway	2.04E-04
17	GO:0030974: thiamine pyrophosphate transport	2.04E-04
18	GO:1900384: regulation of flavonol biosynthetic process	2.04E-04
19	GO:0009966: regulation of signal transduction	2.04E-04
20	GO:2000280: regulation of root development	3.06E-04
21	GO:0010372: positive regulation of gibberellin biosynthetic process	4.57E-04
22	GO:0044419: interspecies interaction between organisms	4.57E-04
23	GO:0048480: stigma development	4.57E-04
24	GO:0015893: drug transport	4.57E-04
25	GO:0006741: NADP biosynthetic process	4.57E-04
26	GO:0046939: nucleotide phosphorylation	4.57E-04
27	GO:0042754: negative regulation of circadian rhythm	4.57E-04
28	GO:0034605: cellular response to heat	6.10E-04
29	GO:0009901: anther dehiscence	6.82E-04
30	GO:0009753: response to jasmonic acid	7.40E-04
31	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	7.44E-04
32	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	7.44E-04
33	GO:0080168: abscisic acid transport	7.44E-04
34	GO:0010366: negative regulation of ethylene biosynthetic process	7.44E-04
35	GO:0019674: NAD metabolic process	7.44E-04
36	GO:0010447: response to acidic pH	7.44E-04
37	GO:0009737: response to abscisic acid	7.64E-04
38	GO:0009873: ethylene-activated signaling pathway	1.02E-03
39	GO:0009399: nitrogen fixation	1.06E-03
40	GO:0002679: respiratory burst involved in defense response	1.06E-03
41	GO:0033014: tetrapyrrole biosynthetic process	1.06E-03
42	GO:0048530: fruit morphogenesis	1.06E-03
43	GO:0019363: pyridine nucleotide biosynthetic process	1.06E-03
44	GO:0009686: gibberellin biosynthetic process	1.20E-03
45	GO:0040007: growth	1.20E-03
46	GO:0006970: response to osmotic stress	1.36E-03
47	GO:0010107: potassium ion import	1.41E-03
48	GO:0015743: malate transport	1.41E-03
49	GO:0009555: pollen development	1.78E-03
50	GO:0009247: glycolipid biosynthetic process	1.80E-03
51	GO:0009164: nucleoside catabolic process	1.80E-03
52	GO:0045487: gibberellin catabolic process	1.80E-03
53	GO:0030041: actin filament polymerization	1.80E-03
54	GO:0048317: seed morphogenesis	2.21E-03
55	GO:0006796: phosphate-containing compound metabolic process	2.21E-03
56	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.21E-03
57	GO:0009651: response to salt stress	2.25E-03
58	GO:0071669: plant-type cell wall organization or biogenesis	3.13E-03
59	GO:1900057: positive regulation of leaf senescence	3.13E-03
60	GO:0010044: response to aluminum ion	3.13E-03
61	GO:0006401: RNA catabolic process	3.13E-03
62	GO:0006955: immune response	3.13E-03
63	GO:0006402: mRNA catabolic process	3.63E-03
64	GO:0019375: galactolipid biosynthetic process	3.63E-03
65	GO:2000070: regulation of response to water deprivation	3.63E-03
66	GO:0010311: lateral root formation	3.95E-03
67	GO:0009932: cell tip growth	4.15E-03
68	GO:0048193: Golgi vesicle transport	4.15E-03
69	GO:0009699: phenylpropanoid biosynthetic process	4.15E-03
70	GO:0051865: protein autoubiquitination	4.70E-03
71	GO:0006783: heme biosynthetic process	4.70E-03
72	GO:0009835: fruit ripening	4.70E-03
73	GO:0009867: jasmonic acid mediated signaling pathway	4.76E-03
74	GO:0006779: porphyrin-containing compound biosynthetic process	5.27E-03
75	GO:0009086: methionine biosynthetic process	5.27E-03
76	GO:0008202: steroid metabolic process	5.27E-03
77	GO:0006839: mitochondrial transport	5.42E-03
78	GO:0006782: protoporphyrinogen IX biosynthetic process	5.86E-03
79	GO:0055062: phosphate ion homeostasis	5.86E-03
80	GO:0048829: root cap development	5.86E-03
81	GO:0051707: response to other organism	6.13E-03
82	GO:0010015: root morphogenesis	6.48E-03
83	GO:0072593: reactive oxygen species metabolic process	6.48E-03
84	GO:1903507: negative regulation of nucleic acid-templated transcription	6.48E-03
85	GO:0006820: anion transport	7.12E-03
86	GO:0002213: defense response to insect	7.12E-03
87	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.12E-03
88	GO:0006855: drug transmembrane transport	7.16E-03
89	GO:0006355: regulation of transcription, DNA-templated	7.56E-03
90	GO:0018107: peptidyl-threonine phosphorylation	7.78E-03
91	GO:0055046: microgametogenesis	7.78E-03
92	GO:0009809: lignin biosynthetic process	8.27E-03
93	GO:0045893: positive regulation of transcription, DNA-templated	8.96E-03
94	GO:0010167: response to nitrate	9.17E-03
95	GO:0071732: cellular response to nitric oxide	9.17E-03
96	GO:0009620: response to fungus	1.08E-02
97	GO:0043622: cortical microtubule organization	1.14E-02
98	GO:0030245: cellulose catabolic process	1.30E-02
99	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.30E-02
100	GO:0030433: ubiquitin-dependent ERAD pathway	1.30E-02
101	GO:0009693: ethylene biosynthetic process	1.38E-02
102	GO:0071369: cellular response to ethylene stimulus	1.38E-02
103	GO:0019722: calcium-mediated signaling	1.47E-02
104	GO:0009306: protein secretion	1.47E-02
105	GO:0006468: protein phosphorylation	1.59E-02
106	GO:0000271: polysaccharide biosynthetic process	1.64E-02
107	GO:0010118: stomatal movement	1.64E-02
108	GO:0009960: endosperm development	1.73E-02
109	GO:0010154: fruit development	1.73E-02
110	GO:0009958: positive gravitropism	1.73E-02
111	GO:0048544: recognition of pollen	1.82E-02
112	GO:0006952: defense response	1.89E-02
113	GO:0009749: response to glucose	1.92E-02
114	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.96E-02
115	GO:0010193: response to ozone	2.01E-02
116	GO:0006351: transcription, DNA-templated	2.10E-02
117	GO:0031047: gene silencing by RNA	2.11E-02
118	GO:0071281: cellular response to iron ion	2.21E-02
119	GO:1901657: glycosyl compound metabolic process	2.21E-02
120	GO:0009639: response to red or far red light	2.30E-02
121	GO:0006470: protein dephosphorylation	2.34E-02
122	GO:0010286: heat acclimation	2.41E-02
123	GO:0009617: response to bacterium	2.44E-02
124	GO:0051607: defense response to virus	2.51E-02
125	GO:0016579: protein deubiquitination	2.51E-02
126	GO:0010027: thylakoid membrane organization	2.61E-02
127	GO:0009738: abscisic acid-activated signaling pathway	2.71E-02
128	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.72E-02
129	GO:0015995: chlorophyll biosynthetic process	2.94E-02
130	GO:0030244: cellulose biosynthetic process	3.16E-02
131	GO:0009658: chloroplast organization	3.17E-02
132	GO:0009832: plant-type cell wall biogenesis	3.27E-02
133	GO:0009409: response to cold	3.28E-02
134	GO:0048527: lateral root development	3.50E-02
135	GO:0009723: response to ethylene	3.66E-02
136	GO:0045087: innate immune response	3.74E-02
137	GO:0080167: response to karrikin	3.92E-02
138	GO:0046686: response to cadmium ion	4.02E-02
139	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.05E-02
140	GO:0009644: response to high light intensity	4.73E-02
141	GO:0009636: response to toxic substance	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
2	GO:0005522: profilin binding	0.00E+00
3	GO:0052694: jasmonoyl-isoleucine-12-hydroxylase activity	0.00E+00
4	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
5	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
6	GO:0061798: GTP 3',8'-cyclase activity	0.00E+00
7	GO:0016165: linoleate 13S-lipoxygenase activity	7.24E-06
8	GO:0016621: cinnamoyl-CoA reductase activity	1.33E-04
9	GO:0090422: thiamine pyrophosphate transporter activity	2.04E-04
10	GO:0090440: abscisic acid transporter activity	2.04E-04
11	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.04E-04
12	GO:0042736: NADH kinase activity	2.04E-04
13	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.63E-04
14	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	4.57E-04
15	GO:0004103: choline kinase activity	4.57E-04
16	GO:0008883: glutamyl-tRNA reductase activity	4.57E-04
17	GO:0001047: core promoter binding	4.57E-04
18	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	4.57E-04
19	GO:0019888: protein phosphatase regulator activity	5.42E-04
20	GO:0046423: allene-oxide cyclase activity	7.44E-04
21	GO:0004383: guanylate cyclase activity	7.44E-04
22	GO:0019201: nucleotide kinase activity	1.06E-03
23	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.06E-03
24	GO:0001653: peptide receptor activity	1.06E-03
25	GO:0035250: UDP-galactosyltransferase activity	1.06E-03
26	GO:0043015: gamma-tubulin binding	1.41E-03
27	GO:0005253: anion channel activity	1.41E-03
28	GO:0050662: coenzyme binding	1.75E-03
29	GO:0008381: mechanically-gated ion channel activity	1.80E-03
30	GO:0018685: alkane 1-monooxygenase activity	1.80E-03
31	GO:0047631: ADP-ribose diphosphatase activity	1.80E-03
32	GO:0004356: glutamate-ammonia ligase activity	1.80E-03
33	GO:0000210: NAD+ diphosphatase activity	2.21E-03
34	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.51E-03
35	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.61E-03
36	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.66E-03
37	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.66E-03
38	GO:0051753: mannan synthase activity	2.66E-03
39	GO:0004017: adenylate kinase activity	2.66E-03
40	GO:0019900: kinase binding	2.66E-03
41	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.13E-03
42	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.13E-03
43	GO:0004427: inorganic diphosphatase activity	3.13E-03
44	GO:0015140: malate transmembrane transporter activity	3.13E-03
45	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.63E-03
46	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.63E-03
47	GO:0003951: NAD+ kinase activity	4.15E-03
48	GO:0008142: oxysterol binding	4.15E-03
49	GO:0047617: acyl-CoA hydrolase activity	5.27E-03
50	GO:0043565: sequence-specific DNA binding	6.10E-03
51	GO:0044212: transcription regulatory region DNA binding	6.13E-03
52	GO:0004860: protein kinase inhibitor activity	6.48E-03
53	GO:0000175: 3'-5'-exoribonuclease activity	7.78E-03
54	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.47E-03
55	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.05E-02
56	GO:0003714: transcription corepressor activity	1.06E-02
57	GO:0003779: actin binding	1.14E-02
58	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.20E-02
59	GO:0035251: UDP-glucosyltransferase activity	1.22E-02
60	GO:0004540: ribonuclease activity	1.22E-02
61	GO:0019825: oxygen binding	1.24E-02
62	GO:0016760: cellulose synthase (UDP-forming) activity	1.38E-02
63	GO:0004674: protein serine/threonine kinase activity	1.48E-02
64	GO:0016853: isomerase activity	1.82E-02
65	GO:0015297: antiporter activity	1.95E-02
66	GO:0016301: kinase activity	2.00E-02
67	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.01E-02
68	GO:0005506: iron ion binding	2.05E-02
69	GO:0004518: nuclease activity	2.11E-02
70	GO:0051015: actin filament binding	2.21E-02
71	GO:0008194: UDP-glycosyltransferase activity	2.29E-02
72	GO:0016759: cellulose synthase activity	2.30E-02
73	GO:0005524: ATP binding	2.41E-02
74	GO:0003676: nucleic acid binding	2.67E-02
75	GO:0102483: scopolin beta-glucosidase activity	2.94E-02
76	GO:0004721: phosphoprotein phosphatase activity	2.94E-02
77	GO:0004004: ATP-dependent RNA helicase activity	2.94E-02
78	GO:0015238: drug transmembrane transporter activity	3.27E-02
79	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.50E-02
80	GO:0004672: protein kinase activity	3.69E-02
81	GO:0008422: beta-glucosidase activity	3.98E-02
82	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.98E-02
83	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.98E-02
84	GO:0020037: heme binding	4.10E-02
85	GO:0051539: 4 iron, 4 sulfur cluster binding	4.10E-02
86	GO:0050661: NADP binding	4.10E-02
87	GO:0052689: carboxylic ester hydrolase activity	4.33E-02
88	GO:0043621: protein self-association	4.73E-02
89	GO:0035091: phosphatidylinositol binding	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0005911: cell-cell junction	2.04E-04
2	GO:0016442: RISC complex	2.04E-04
3	GO:0019008: molybdopterin synthase complex	2.04E-04
4	GO:0000178: exosome (RNase complex)	1.80E-03
5	GO:0016363: nuclear matrix	2.66E-03
6	GO:0000932: P-body	2.89E-03
7	GO:0010494: cytoplasmic stress granule	4.70E-03
8	GO:0000159: protein phosphatase type 2A complex	6.48E-03
9	GO:0090404: pollen tube tip	6.48E-03
10	GO:0071013: catalytic step 2 spliceosome	6.48E-03
11	GO:0048471: perinuclear region of cytoplasm	6.48E-03
12	GO:0009706: chloroplast inner membrane	1.18E-02
13	GO:0005743: mitochondrial inner membrane	1.25E-02
14	GO:0031225: anchored component of membrane	1.42E-02
15	GO:0030136: clathrin-coated vesicle	1.55E-02
16	GO:0005770: late endosome	1.73E-02
17	GO:0005737: cytoplasm	2.11E-02
18	GO:0005886: plasma membrane	2.61E-02
19	GO:0046658: anchored component of plasma membrane	2.71E-02
20	GO:0009707: chloroplast outer membrane	3.16E-02
21	GO:0019005: SCF ubiquitin ligase complex	3.16E-02
22	GO:0031902: late endosome membrane	4.22E-02
23	GO:0005829: cytosol	4.43E-02
24	GO:0090406: pollen tube	4.47E-02