co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G30320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0016118: carotenoid catabolic process	0.00E+00
7	GO:0015717: triose phosphate transport	0.00E+00
8	GO:0015882: L-ascorbic acid transport	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
11	GO:0070125: mitochondrial translational elongation	0.00E+00
12	GO:0015979: photosynthesis	2.76E-18
13	GO:0009768: photosynthesis, light harvesting in photosystem I	9.33E-12
14	GO:0018298: protein-chromophore linkage	6.64E-11
15	GO:0010027: thylakoid membrane organization	1.05E-09
16	GO:0009769: photosynthesis, light harvesting in photosystem II	2.71E-08
17	GO:0009416: response to light stimulus	4.26E-07
18	GO:0019684: photosynthesis, light reaction	4.34E-07
19	GO:0010207: photosystem II assembly	1.10E-06
20	GO:0042549: photosystem II stabilization	1.23E-06
21	GO:0015995: chlorophyll biosynthetic process	2.42E-06
22	GO:0035304: regulation of protein dephosphorylation	3.02E-06
23	GO:0018026: peptidyl-lysine monomethylation	3.02E-06
24	GO:0010196: nonphotochemical quenching	3.47E-06
25	GO:0009645: response to low light intensity stimulus	3.47E-06
26	GO:0010218: response to far red light	4.11E-06
27	GO:0010206: photosystem II repair	1.07E-05
28	GO:0090391: granum assembly	1.09E-05
29	GO:0010114: response to red light	1.13E-05
30	GO:0009644: response to high light intensity	1.37E-05
31	GO:0010205: photoinhibition	1.45E-05
32	GO:0055114: oxidation-reduction process	2.77E-05
33	GO:0006094: gluconeogenesis	3.79E-05
34	GO:0006021: inositol biosynthetic process	4.46E-05
35	GO:0010021: amylopectin biosynthetic process	4.46E-05
36	GO:0009637: response to blue light	9.61E-05
37	GO:0009269: response to desiccation	1.04E-04
38	GO:0009642: response to light intensity	2.38E-04
39	GO:0006419: alanyl-tRNA aminoacylation	2.55E-04
40	GO:0043953: protein transport by the Tat complex	2.55E-04
41	GO:0051775: response to redox state	2.55E-04
42	GO:0000481: maturation of 5S rRNA	2.55E-04
43	GO:0065002: intracellular protein transmembrane transport	2.55E-04
44	GO:0043686: co-translational protein modification	2.55E-04
45	GO:0043007: maintenance of rDNA	2.55E-04
46	GO:0010028: xanthophyll cycle	2.55E-04
47	GO:0034337: RNA folding	2.55E-04
48	GO:0006096: glycolytic process	3.31E-04
49	GO:0006098: pentose-phosphate shunt	3.55E-04
50	GO:0009658: chloroplast organization	3.93E-04
51	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.64E-04
52	GO:0080181: lateral root branching	5.64E-04
53	GO:0009629: response to gravity	5.64E-04
54	GO:0016124: xanthophyll catabolic process	5.64E-04
55	GO:0010364: regulation of ethylene biosynthetic process	5.64E-04
56	GO:0006432: phenylalanyl-tRNA aminoacylation	5.64E-04
57	GO:0097054: L-glutamate biosynthetic process	5.64E-04
58	GO:0006729: tetrahydrobiopterin biosynthetic process	5.64E-04
59	GO:0016121: carotene catabolic process	5.64E-04
60	GO:0009773: photosynthetic electron transport in photosystem I	5.68E-04
61	GO:0009073: aromatic amino acid family biosynthetic process	5.68E-04
62	GO:0043085: positive regulation of catalytic activity	5.68E-04
63	GO:0016311: dephosphorylation	6.12E-04
64	GO:0005983: starch catabolic process	6.51E-04
65	GO:0006006: glucose metabolic process	7.37E-04
66	GO:0019253: reductive pentose-phosphate cycle	8.30E-04
67	GO:1902448: positive regulation of shade avoidance	9.15E-04
68	GO:0006000: fructose metabolic process	9.15E-04
69	GO:0035436: triose phosphate transmembrane transport	9.15E-04
70	GO:0005977: glycogen metabolic process	9.15E-04
71	GO:0090351: seedling development	9.26E-04
72	GO:0034599: cellular response to oxidative stress	9.27E-04
73	GO:0071484: cellular response to light intensity	1.31E-03
74	GO:0006107: oxaloacetate metabolic process	1.31E-03
75	GO:0006537: glutamate biosynthetic process	1.31E-03
76	GO:0042989: sequestering of actin monomers	1.31E-03
77	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.31E-03
78	GO:0006020: inositol metabolic process	1.31E-03
79	GO:0061077: chaperone-mediated protein folding	1.37E-03
80	GO:0019464: glycine decarboxylation via glycine cleavage system	1.75E-03
81	GO:0009765: photosynthesis, light harvesting	1.75E-03
82	GO:0006109: regulation of carbohydrate metabolic process	1.75E-03
83	GO:0015994: chlorophyll metabolic process	1.75E-03
84	GO:0030104: water homeostasis	1.75E-03
85	GO:0006546: glycine catabolic process	1.75E-03
86	GO:0006552: leucine catabolic process	1.75E-03
87	GO:0006734: NADH metabolic process	1.75E-03
88	GO:0015713: phosphoglycerate transport	1.75E-03
89	GO:0019676: ammonia assimilation cycle	1.75E-03
90	GO:0015976: carbon utilization	1.75E-03
91	GO:0030041: actin filament polymerization	2.23E-03
92	GO:0016120: carotene biosynthetic process	2.23E-03
93	GO:0006564: L-serine biosynthetic process	2.23E-03
94	GO:0006656: phosphatidylcholine biosynthetic process	2.23E-03
95	GO:0010236: plastoquinone biosynthetic process	2.23E-03
96	GO:0031365: N-terminal protein amino acid modification	2.23E-03
97	GO:0006662: glycerol ether metabolic process	2.24E-03
98	GO:0019252: starch biosynthetic process	2.57E-03
99	GO:0009735: response to cytokinin	2.69E-03
100	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.75E-03
101	GO:0042793: transcription from plastid promoter	2.75E-03
102	GO:0009635: response to herbicide	2.75E-03
103	GO:0046855: inositol phosphate dephosphorylation	2.75E-03
104	GO:0009643: photosynthetic acclimation	2.75E-03
105	GO:0050665: hydrogen peroxide biosynthetic process	2.75E-03
106	GO:0042742: defense response to bacterium	3.25E-03
107	GO:0071470: cellular response to osmotic stress	3.30E-03
108	GO:0010189: vitamin E biosynthetic process	3.30E-03
109	GO:0009854: oxidative photosynthetic carbon pathway	3.30E-03
110	GO:0071446: cellular response to salicylic acid stimulus	3.89E-03
111	GO:1900057: positive regulation of leaf senescence	3.89E-03
112	GO:0022904: respiratory electron transport chain	3.89E-03
113	GO:0006400: tRNA modification	3.89E-03
114	GO:0051510: regulation of unidimensional cell growth	3.89E-03
115	GO:0030091: protein repair	4.52E-03
116	GO:0005978: glycogen biosynthetic process	4.52E-03
117	GO:0032508: DNA duplex unwinding	4.52E-03
118	GO:0031540: regulation of anthocyanin biosynthetic process	4.52E-03
119	GO:0006002: fructose 6-phosphate metabolic process	5.18E-03
120	GO:0017004: cytochrome complex assembly	5.18E-03
121	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.18E-03
122	GO:0009813: flavonoid biosynthetic process	5.44E-03
123	GO:0098656: anion transmembrane transport	5.86E-03
124	GO:0090333: regulation of stomatal closure	5.86E-03
125	GO:0009409: response to cold	5.90E-03
126	GO:0005982: starch metabolic process	6.58E-03
127	GO:0048829: root cap development	7.33E-03
128	GO:0009089: lysine biosynthetic process via diaminopimelate	8.11E-03
129	GO:0072593: reactive oxygen species metabolic process	8.11E-03
130	GO:0009750: response to fructose	8.11E-03
131	GO:0009744: response to sucrose	8.47E-03
132	GO:0006790: sulfur compound metabolic process	8.92E-03
133	GO:0045037: protein import into chloroplast stroma	8.92E-03
134	GO:0009767: photosynthetic electron transport chain	9.75E-03
135	GO:0005986: sucrose biosynthetic process	9.75E-03
136	GO:0010628: positive regulation of gene expression	9.75E-03
137	GO:0006108: malate metabolic process	9.75E-03
138	GO:0006302: double-strand break repair	1.06E-02
139	GO:0009266: response to temperature stimulus	1.06E-02
140	GO:0006979: response to oxidative stress	1.09E-02
141	GO:0010030: positive regulation of seed germination	1.15E-02
142	GO:0046854: phosphatidylinositol phosphorylation	1.15E-02
143	GO:0010224: response to UV-B	1.18E-02
144	GO:0006636: unsaturated fatty acid biosynthetic process	1.24E-02
145	GO:0007010: cytoskeleton organization	1.34E-02
146	GO:0019915: lipid storage	1.53E-02
147	GO:0051321: meiotic cell cycle	1.53E-02
148	GO:0045454: cell redox homeostasis	1.58E-02
149	GO:0009793: embryo development ending in seed dormancy	1.67E-02
150	GO:0071215: cellular response to abscisic acid stimulus	1.74E-02
151	GO:0009561: megagametogenesis	1.85E-02
152	GO:0016117: carotenoid biosynthetic process	1.95E-02
153	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.95E-02
154	GO:0032259: methylation	1.95E-02
155	GO:0042631: cellular response to water deprivation	2.07E-02
156	GO:0006810: transport	2.08E-02
157	GO:0009845: seed germination	2.22E-02
158	GO:0009646: response to absence of light	2.29E-02
159	GO:0006814: sodium ion transport	2.29E-02
160	GO:0046686: response to cadmium ion	2.30E-02
161	GO:0009791: post-embryonic development	2.41E-02
162	GO:0008654: phospholipid biosynthetic process	2.41E-02
163	GO:0055072: iron ion homeostasis	2.41E-02
164	GO:0071554: cell wall organization or biogenesis	2.53E-02
165	GO:0009567: double fertilization forming a zygote and endosperm	2.90E-02
166	GO:0051607: defense response to virus	3.16E-02
167	GO:0048573: photoperiodism, flowering	3.70E-02
168	GO:0009817: defense response to fungus, incompatible interaction	3.97E-02
169	GO:0009834: plant-type secondary cell wall biogenesis	4.26E-02
170	GO:0006811: ion transport	4.26E-02
171	GO:0048527: lateral root development	4.41E-02
172	GO:0010119: regulation of stomatal movement	4.41E-02
173	GO:0009853: photorespiration	4.70E-02
174	GO:0006099: tricarboxylic acid cycle	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
4	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
5	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
6	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
7	GO:0010242: oxygen evolving activity	0.00E+00
8	GO:0016166: phytoene dehydrogenase activity	0.00E+00
9	GO:0048039: ubiquinone binding	0.00E+00
10	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0046408: chlorophyll synthetase activity	0.00E+00
13	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
14	GO:0031409: pigment binding	3.93E-12
15	GO:0016168: chlorophyll binding	1.30E-09
16	GO:0008266: poly(U) RNA binding	1.10E-06
17	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.02E-06
18	GO:0016851: magnesium chelatase activity	2.46E-05
19	GO:0016279: protein-lysine N-methyltransferase activity	4.46E-05
20	GO:0003959: NADPH dehydrogenase activity	7.11E-05
21	GO:0004332: fructose-bisphosphate aldolase activity	1.04E-04
22	GO:0046872: metal ion binding	2.11E-04
23	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.55E-04
24	GO:0050308: sugar-phosphatase activity	2.55E-04
25	GO:0004813: alanine-tRNA ligase activity	2.55E-04
26	GO:0019203: carbohydrate phosphatase activity	2.55E-04
27	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.55E-04
28	GO:0042586: peptide deformylase activity	2.55E-04
29	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.55E-04
30	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.55E-04
31	GO:0008746: NAD(P)+ transhydrogenase activity	2.55E-04
32	GO:0016041: glutamate synthase (ferredoxin) activity	2.55E-04
33	GO:0045486: naringenin 3-dioxygenase activity	2.55E-04
34	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.55E-04
35	GO:0008047: enzyme activator activity	4.92E-04
36	GO:0016491: oxidoreductase activity	5.25E-04
37	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.64E-04
38	GO:0004617: phosphoglycerate dehydrogenase activity	5.64E-04
39	GO:0052832: inositol monophosphate 3-phosphatase activity	5.64E-04
40	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.64E-04
41	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.64E-04
42	GO:0016630: protochlorophyllide reductase activity	5.64E-04
43	GO:0008934: inositol monophosphate 1-phosphatase activity	5.64E-04
44	GO:0019156: isoamylase activity	5.64E-04
45	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.64E-04
46	GO:0052833: inositol monophosphate 4-phosphatase activity	5.64E-04
47	GO:0004826: phenylalanine-tRNA ligase activity	5.64E-04
48	GO:0004512: inositol-3-phosphate synthase activity	5.64E-04
49	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.64E-04
50	GO:0047746: chlorophyllase activity	5.64E-04
51	GO:0042389: omega-3 fatty acid desaturase activity	5.64E-04
52	GO:0000049: tRNA binding	6.51E-04
53	GO:0005315: inorganic phosphate transmembrane transporter activity	7.37E-04
54	GO:0031072: heat shock protein binding	7.37E-04
55	GO:0004324: ferredoxin-NADP+ reductase activity	9.15E-04
56	GO:0043169: cation binding	9.15E-04
57	GO:0003913: DNA photolyase activity	9.15E-04
58	GO:0071917: triose-phosphate transmembrane transporter activity	9.15E-04
59	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.15E-04
60	GO:0005528: FK506 binding	1.14E-03
61	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.31E-03
62	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.31E-03
63	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.31E-03
64	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.31E-03
65	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.31E-03
66	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.46E-03
67	GO:0051287: NAD binding	1.53E-03
68	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.75E-03
69	GO:0008891: glycolate oxidase activity	1.75E-03
70	GO:0015120: phosphoglycerate transmembrane transporter activity	1.75E-03
71	GO:0008514: organic anion transmembrane transporter activity	1.77E-03
72	GO:0047134: protein-disulfide reductase activity	1.92E-03
73	GO:0003785: actin monomer binding	2.23E-03
74	GO:0051538: 3 iron, 4 sulfur cluster binding	2.23E-03
75	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	2.23E-03
76	GO:0004791: thioredoxin-disulfide reductase activity	2.40E-03
77	GO:0004556: alpha-amylase activity	2.75E-03
78	GO:0000293: ferric-chelate reductase activity	2.75E-03
79	GO:0016615: malate dehydrogenase activity	2.75E-03
80	GO:2001070: starch binding	2.75E-03
81	GO:0005509: calcium ion binding	2.77E-03
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.13E-03
83	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.30E-03
84	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.30E-03
85	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.30E-03
86	GO:0030060: L-malate dehydrogenase activity	3.30E-03
87	GO:0016597: amino acid binding	3.75E-03
88	GO:0009881: photoreceptor activity	3.89E-03
89	GO:0004033: aldo-keto reductase (NADP) activity	4.52E-03
90	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.92E-03
91	GO:0008135: translation factor activity, RNA binding	5.18E-03
92	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.18E-03
93	GO:0071949: FAD binding	5.86E-03
94	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.86E-03
95	GO:0030145: manganese ion binding	5.99E-03
96	GO:0003746: translation elongation factor activity	6.56E-03
97	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.58E-03
98	GO:0003993: acid phosphatase activity	6.86E-03
99	GO:0050661: NADP binding	7.48E-03
100	GO:0005198: structural molecule activity	9.53E-03
101	GO:0004565: beta-galactosidase activity	9.75E-03
102	GO:0004089: carbonate dehydratase activity	9.75E-03
103	GO:0003712: transcription cofactor activity	1.15E-02
104	GO:0004857: enzyme inhibitor activity	1.34E-02
105	GO:0031418: L-ascorbic acid binding	1.34E-02
106	GO:0008408: 3'-5' exonuclease activity	1.53E-02
107	GO:0051082: unfolded protein binding	1.63E-02
108	GO:0015035: protein disulfide oxidoreductase activity	1.68E-02
109	GO:0003756: protein disulfide isomerase activity	1.85E-02
110	GO:0019843: rRNA binding	2.05E-02
111	GO:0010181: FMN binding	2.29E-02
112	GO:0048038: quinone binding	2.53E-02
113	GO:0005515: protein binding	2.75E-02
114	GO:0016413: O-acetyltransferase activity	3.16E-02
115	GO:0042802: identical protein binding	3.59E-02
116	GO:0000287: magnesium ion binding	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0010368: chloroplast isoamylase complex	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0009515: granal stacked thylakoid	0.00E+00
6	GO:0009507: chloroplast	9.58E-53
7	GO:0009535: chloroplast thylakoid membrane	7.03E-47
8	GO:0009534: chloroplast thylakoid	6.01E-46
9	GO:0009941: chloroplast envelope	4.59E-32
10	GO:0009579: thylakoid	6.13E-30
11	GO:0009570: chloroplast stroma	1.98E-29
12	GO:0010287: plastoglobule	2.95E-19
13	GO:0009543: chloroplast thylakoid lumen	3.13E-14
14	GO:0030095: chloroplast photosystem II	1.48E-12
15	GO:0031977: thylakoid lumen	9.70E-12
16	GO:0009522: photosystem I	1.42E-10
17	GO:0009654: photosystem II oxygen evolving complex	8.13E-10
18	GO:0009523: photosystem II	1.04E-08
19	GO:0019898: extrinsic component of membrane	1.04E-08
20	GO:0030076: light-harvesting complex	2.25E-08
21	GO:0009517: PSII associated light-harvesting complex II	2.78E-07
22	GO:0048046: apoplast	5.99E-07
23	GO:0010007: magnesium chelatase complex	1.09E-05
24	GO:0031969: chloroplast membrane	1.19E-05
25	GO:0009706: chloroplast inner membrane	5.28E-05
26	GO:0009538: photosystem I reaction center	2.38E-04
27	GO:0031361: integral component of thylakoid membrane	2.55E-04
28	GO:0000791: euchromatin	2.55E-04
29	GO:0009783: photosystem II antenna complex	2.55E-04
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.55E-04
31	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.64E-04
32	GO:0030870: Mre11 complex	5.64E-04
33	GO:0033281: TAT protein transport complex	9.15E-04
34	GO:0009509: chromoplast	9.15E-04
35	GO:0005960: glycine cleavage complex	1.31E-03
36	GO:0000795: synaptonemal complex	2.23E-03
37	GO:0055035: plastid thylakoid membrane	2.23E-03
38	GO:0005623: cell	3.77E-03
39	GO:0009533: chloroplast stromal thylakoid	3.89E-03
40	GO:0031305: integral component of mitochondrial inner membrane	4.52E-03
41	GO:0009501: amyloplast	4.52E-03
42	GO:0005759: mitochondrial matrix	4.87E-03
43	GO:0008180: COP9 signalosome	5.86E-03
44	GO:0005740: mitochondrial envelope	7.33E-03
45	GO:0032040: small-subunit processome	8.92E-03
46	GO:0009508: plastid chromosome	9.75E-03
47	GO:0005938: cell cortex	9.75E-03
48	GO:0042651: thylakoid membrane	1.43E-02
49	GO:0016020: membrane	1.63E-02
50	GO:0015629: actin cytoskeleton	1.74E-02
51	GO:0016021: integral component of membrane	1.76E-02
52	GO:0000785: chromatin	2.65E-02
53	GO:0010319: stromule	3.03E-02
54	GO:0009295: nucleoid	3.03E-02
55	GO:0019005: SCF ubiquitin ligase complex	3.97E-02
56	GO:0022626: cytosolic ribosome	3.99E-02
57	GO:0015934: large ribosomal subunit	4.41E-02
58	GO:0009536: plastid	4.54E-02