GO Enrichment Analysis of Co-expressed Genes with
AT3G30180
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017012: protein-phytochromobilin linkage | 0.00E+00 |
| 2 | GO:0006721: terpenoid metabolic process | 0.00E+00 |
| 3 | GO:0010336: gibberellic acid homeostasis | 0.00E+00 |
| 4 | GO:0010423: negative regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 5 | GO:0045740: positive regulation of DNA replication | 0.00E+00 |
| 6 | GO:0010202: response to low fluence red light stimulus | 0.00E+00 |
| 7 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 8 | GO:0051603: proteolysis involved in cellular protein catabolic process | 6.26E-07 |
| 9 | GO:0010148: transpiration | 3.91E-06 |
| 10 | GO:0005975: carbohydrate metabolic process | 9.45E-06 |
| 11 | GO:0050790: regulation of catalytic activity | 3.66E-05 |
| 12 | GO:0031468: nuclear envelope reassembly | 8.96E-05 |
| 13 | GO:0006835: dicarboxylic acid transport | 8.96E-05 |
| 14 | GO:0006567: threonine catabolic process | 8.96E-05 |
| 15 | GO:0016487: farnesol metabolic process | 8.96E-05 |
| 16 | GO:0048527: lateral root development | 1.13E-04 |
| 17 | GO:0010617: circadian regulation of calcium ion oscillation | 2.12E-04 |
| 18 | GO:0007154: cell communication | 2.12E-04 |
| 19 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 2.12E-04 |
| 20 | GO:0019441: tryptophan catabolic process to kynurenine | 2.12E-04 |
| 21 | GO:0009257: 10-formyltetrahydrofolate biosynthetic process | 2.12E-04 |
| 22 | GO:0048826: cotyledon morphogenesis | 2.12E-04 |
| 23 | GO:0030010: establishment of cell polarity | 2.12E-04 |
| 24 | GO:0071492: cellular response to UV-A | 3.54E-04 |
| 25 | GO:0010476: gibberellin mediated signaling pathway | 3.54E-04 |
| 26 | GO:0010325: raffinose family oligosaccharide biosynthetic process | 3.54E-04 |
| 27 | GO:0006012: galactose metabolic process | 4.04E-04 |
| 28 | GO:0006516: glycoprotein catabolic process | 5.10E-04 |
| 29 | GO:0009113: purine nucleobase biosynthetic process | 5.10E-04 |
| 30 | GO:0006882: cellular zinc ion homeostasis | 5.10E-04 |
| 31 | GO:0009584: detection of visible light | 5.10E-04 |
| 32 | GO:0080022: primary root development | 5.13E-04 |
| 33 | GO:0009649: entrainment of circadian clock | 6.78E-04 |
| 34 | GO:0006749: glutathione metabolic process | 6.78E-04 |
| 35 | GO:0015846: polyamine transport | 6.78E-04 |
| 36 | GO:0044205: 'de novo' UMP biosynthetic process | 6.78E-04 |
| 37 | GO:0006646: phosphatidylethanolamine biosynthetic process | 6.78E-04 |
| 38 | GO:0009687: abscisic acid metabolic process | 6.78E-04 |
| 39 | GO:0015976: carbon utilization | 6.78E-04 |
| 40 | GO:0015743: malate transport | 6.78E-04 |
| 41 | GO:0006545: glycine biosynthetic process | 6.78E-04 |
| 42 | GO:0071486: cellular response to high light intensity | 6.78E-04 |
| 43 | GO:0009939: positive regulation of gibberellic acid mediated signaling pathway | 6.78E-04 |
| 44 | GO:0009765: photosynthesis, light harvesting | 6.78E-04 |
| 45 | GO:0071249: cellular response to nitrate | 6.78E-04 |
| 46 | GO:0006221: pyrimidine nucleotide biosynthetic process | 6.78E-04 |
| 47 | GO:0009229: thiamine diphosphate biosynthetic process | 8.59E-04 |
| 48 | GO:0009228: thiamine biosynthetic process | 1.05E-03 |
| 49 | GO:0006796: phosphate-containing compound metabolic process | 1.05E-03 |
| 50 | GO:0009117: nucleotide metabolic process | 1.05E-03 |
| 51 | GO:0006751: glutathione catabolic process | 1.05E-03 |
| 52 | GO:0042732: D-xylose metabolic process | 1.05E-03 |
| 53 | GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity | 1.05E-03 |
| 54 | GO:0010411: xyloglucan metabolic process | 1.12E-03 |
| 55 | GO:0048444: floral organ morphogenesis | 1.25E-03 |
| 56 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.25E-03 |
| 57 | GO:0009407: toxin catabolic process | 1.36E-03 |
| 58 | GO:0009396: folic acid-containing compound biosynthetic process | 1.46E-03 |
| 59 | GO:0000082: G1/S transition of mitotic cell cycle | 1.46E-03 |
| 60 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.46E-03 |
| 61 | GO:0030026: cellular manganese ion homeostasis | 1.46E-03 |
| 62 | GO:0010374: stomatal complex development | 1.46E-03 |
| 63 | GO:0010161: red light signaling pathway | 1.46E-03 |
| 64 | GO:0006955: immune response | 1.46E-03 |
| 65 | GO:0007050: cell cycle arrest | 1.46E-03 |
| 66 | GO:0009850: auxin metabolic process | 1.69E-03 |
| 67 | GO:0009880: embryonic pattern specification | 1.93E-03 |
| 68 | GO:0009056: catabolic process | 2.18E-03 |
| 69 | GO:0015780: nucleotide-sugar transport | 2.18E-03 |
| 70 | GO:0006098: pentose-phosphate shunt | 2.18E-03 |
| 71 | GO:0009636: response to toxic substance | 2.24E-03 |
| 72 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.43E-03 |
| 73 | GO:0051453: regulation of intracellular pH | 2.43E-03 |
| 74 | GO:0009638: phototropism | 2.43E-03 |
| 75 | GO:0035999: tetrahydrofolate interconversion | 2.43E-03 |
| 76 | GO:0055062: phosphate ion homeostasis | 2.70E-03 |
| 77 | GO:0045036: protein targeting to chloroplast | 2.70E-03 |
| 78 | GO:0006325: chromatin organization | 2.70E-03 |
| 79 | GO:0009684: indoleacetic acid biosynthetic process | 2.98E-03 |
| 80 | GO:0006816: calcium ion transport | 2.98E-03 |
| 81 | GO:0010152: pollen maturation | 3.26E-03 |
| 82 | GO:0010102: lateral root morphogenesis | 3.56E-03 |
| 83 | GO:0006807: nitrogen compound metabolic process | 3.56E-03 |
| 84 | GO:0009691: cytokinin biosynthetic process | 3.56E-03 |
| 85 | GO:0006108: malate metabolic process | 3.56E-03 |
| 86 | GO:2000028: regulation of photoperiodism, flowering | 3.56E-03 |
| 87 | GO:0050826: response to freezing | 3.56E-03 |
| 88 | GO:0071555: cell wall organization | 3.73E-03 |
| 89 | GO:0009266: response to temperature stimulus | 3.86E-03 |
| 90 | GO:0007030: Golgi organization | 4.18E-03 |
| 91 | GO:0019915: lipid storage | 5.52E-03 |
| 92 | GO:0061077: chaperone-mediated protein folding | 5.52E-03 |
| 93 | GO:0006508: proteolysis | 5.84E-03 |
| 94 | GO:0019748: secondary metabolic process | 5.87E-03 |
| 95 | GO:0007623: circadian rhythm | 6.52E-03 |
| 96 | GO:0048443: stamen development | 6.61E-03 |
| 97 | GO:0042391: regulation of membrane potential | 7.37E-03 |
| 98 | GO:0010087: phloem or xylem histogenesis | 7.37E-03 |
| 99 | GO:0006520: cellular amino acid metabolic process | 7.77E-03 |
| 100 | GO:0061025: membrane fusion | 8.17E-03 |
| 101 | GO:0006814: sodium ion transport | 8.17E-03 |
| 102 | GO:0008654: phospholipid biosynthetic process | 8.58E-03 |
| 103 | GO:0009630: gravitropism | 9.42E-03 |
| 104 | GO:1901657: glycosyl compound metabolic process | 9.85E-03 |
| 105 | GO:0016126: sterol biosynthetic process | 1.17E-02 |
| 106 | GO:0010029: regulation of seed germination | 1.21E-02 |
| 107 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.21E-02 |
| 108 | GO:0042128: nitrate assimilation | 1.26E-02 |
| 109 | GO:0018298: protein-chromophore linkage | 1.41E-02 |
| 110 | GO:0010311: lateral root formation | 1.46E-02 |
| 111 | GO:0010218: response to far red light | 1.51E-02 |
| 112 | GO:0009631: cold acclimation | 1.56E-02 |
| 113 | GO:0007568: aging | 1.56E-02 |
| 114 | GO:0006865: amino acid transport | 1.61E-02 |
| 115 | GO:0009867: jasmonic acid mediated signaling pathway | 1.66E-02 |
| 116 | GO:0045087: innate immune response | 1.66E-02 |
| 117 | GO:0006099: tricarboxylic acid cycle | 1.72E-02 |
| 118 | GO:0006629: lipid metabolic process | 1.86E-02 |
| 119 | GO:0009640: photomorphogenesis | 1.99E-02 |
| 120 | GO:0009744: response to sucrose | 1.99E-02 |
| 121 | GO:0042546: cell wall biogenesis | 2.05E-02 |
| 122 | GO:0008643: carbohydrate transport | 2.10E-02 |
| 123 | GO:0009965: leaf morphogenesis | 2.16E-02 |
| 124 | GO:0031347: regulation of defense response | 2.28E-02 |
| 125 | GO:0009585: red, far-red light phototransduction | 2.46E-02 |
| 126 | GO:0009736: cytokinin-activated signaling pathway | 2.46E-02 |
| 127 | GO:0006857: oligopeptide transport | 2.58E-02 |
| 128 | GO:0048367: shoot system development | 2.84E-02 |
| 129 | GO:0009626: plant-type hypersensitive response | 2.90E-02 |
| 130 | GO:0009735: response to cytokinin | 3.01E-02 |
| 131 | GO:0009742: brassinosteroid mediated signaling pathway | 3.30E-02 |
| 132 | GO:0035556: intracellular signal transduction | 3.48E-02 |
| 133 | GO:0009790: embryo development | 4.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031517: red light photoreceptor activity | 0.00E+00 |
| 2 | GO:0004151: dihydroorotase activity | 0.00E+00 |
| 3 | GO:0017153: sodium:dicarboxylate symporter activity | 0.00E+00 |
| 4 | GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity | 0.00E+00 |
| 5 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 6 | GO:0050334: thiaminase activity | 0.00E+00 |
| 7 | GO:0047886: farnesol dehydrogenase activity | 0.00E+00 |
| 8 | GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity | 0.00E+00 |
| 9 | GO:0009045: xylose isomerase activity | 0.00E+00 |
| 10 | GO:0004197: cysteine-type endopeptidase activity | 1.30E-08 |
| 11 | GO:0008234: cysteine-type peptidase activity | 7.50E-07 |
| 12 | GO:0004557: alpha-galactosidase activity | 1.64E-06 |
| 13 | GO:0052692: raffinose alpha-galactosidase activity | 1.64E-06 |
| 14 | GO:0004034: aldose 1-epimerase activity | 4.79E-05 |
| 15 | GO:1990841: promoter-specific chromatin binding | 8.96E-05 |
| 16 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 8.96E-05 |
| 17 | GO:0004793: threonine aldolase activity | 8.96E-05 |
| 18 | GO:0004307: ethanolaminephosphotransferase activity | 8.96E-05 |
| 19 | GO:0008732: L-allo-threonine aldolase activity | 8.96E-05 |
| 20 | GO:0031516: far-red light photoreceptor activity | 8.96E-05 |
| 21 | GO:0046480: galactolipid galactosyltransferase activity | 8.96E-05 |
| 22 | GO:0080079: cellobiose glucosidase activity | 8.96E-05 |
| 23 | GO:0004560: alpha-L-fucosidase activity | 8.96E-05 |
| 24 | GO:0015085: calcium ion transmembrane transporter activity | 8.96E-05 |
| 25 | GO:0016780: phosphotransferase activity, for other substituted phosphate groups | 8.96E-05 |
| 26 | GO:0004142: diacylglycerol cholinephosphotransferase activity | 2.12E-04 |
| 27 | GO:0004061: arylformamidase activity | 2.12E-04 |
| 28 | GO:0004329: formate-tetrahydrofolate ligase activity | 2.12E-04 |
| 29 | GO:0080109: indole-3-acetonitrile nitrile hydratase activity | 2.12E-04 |
| 30 | GO:0015179: L-amino acid transmembrane transporter activity | 2.12E-04 |
| 31 | GO:0010331: gibberellin binding | 2.12E-04 |
| 32 | GO:0009883: red or far-red light photoreceptor activity | 2.12E-04 |
| 33 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 2.12E-04 |
| 34 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 2.12E-04 |
| 35 | GO:0030572: phosphatidyltransferase activity | 2.12E-04 |
| 36 | GO:0008020: G-protein coupled photoreceptor activity | 3.54E-04 |
| 37 | GO:0080061: indole-3-acetonitrile nitrilase activity | 3.54E-04 |
| 38 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.54E-04 |
| 39 | GO:0015203: polyamine transmembrane transporter activity | 5.10E-04 |
| 40 | GO:0035529: NADH pyrophosphatase activity | 5.10E-04 |
| 41 | GO:0000257: nitrilase activity | 5.10E-04 |
| 42 | GO:0000254: C-4 methylsterol oxidase activity | 5.10E-04 |
| 43 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 6.78E-04 |
| 44 | GO:0004301: epoxide hydrolase activity | 6.78E-04 |
| 45 | GO:0015368: calcium:cation antiporter activity | 6.78E-04 |
| 46 | GO:0010011: auxin binding | 6.78E-04 |
| 47 | GO:0015369: calcium:proton antiporter activity | 6.78E-04 |
| 48 | GO:0016787: hydrolase activity | 7.93E-04 |
| 49 | GO:0051117: ATPase binding | 1.05E-03 |
| 50 | GO:0016208: AMP binding | 1.05E-03 |
| 51 | GO:0016615: malate dehydrogenase activity | 1.05E-03 |
| 52 | GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity | 1.05E-03 |
| 53 | GO:0030060: L-malate dehydrogenase activity | 1.25E-03 |
| 54 | GO:0005261: cation channel activity | 1.25E-03 |
| 55 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 1.46E-03 |
| 56 | GO:0004427: inorganic diphosphatase activity | 1.46E-03 |
| 57 | GO:0015140: malate transmembrane transporter activity | 1.46E-03 |
| 58 | GO:0004364: glutathione transferase activity | 1.92E-03 |
| 59 | GO:0015174: basic amino acid transmembrane transporter activity | 2.43E-03 |
| 60 | GO:0004673: protein histidine kinase activity | 2.70E-03 |
| 61 | GO:0004860: protein kinase inhibitor activity | 2.98E-03 |
| 62 | GO:0004129: cytochrome-c oxidase activity | 2.98E-03 |
| 63 | GO:0008378: galactosyltransferase activity | 3.26E-03 |
| 64 | GO:0004089: carbonate dehydratase activity | 3.56E-03 |
| 65 | GO:0000155: phosphorelay sensor kinase activity | 3.56E-03 |
| 66 | GO:0022857: transmembrane transporter activity | 3.57E-03 |
| 67 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 3.86E-03 |
| 68 | GO:0030552: cAMP binding | 4.18E-03 |
| 69 | GO:0030553: cGMP binding | 4.18E-03 |
| 70 | GO:0043130: ubiquitin binding | 4.83E-03 |
| 71 | GO:0005528: FK506 binding | 4.83E-03 |
| 72 | GO:0005216: ion channel activity | 5.17E-03 |
| 73 | GO:0008324: cation transmembrane transporter activity | 5.17E-03 |
| 74 | GO:0015297: antiporter activity | 6.23E-03 |
| 75 | GO:0005249: voltage-gated potassium channel activity | 7.37E-03 |
| 76 | GO:0030551: cyclic nucleotide binding | 7.37E-03 |
| 77 | GO:0050662: coenzyme binding | 8.17E-03 |
| 78 | GO:0016853: isomerase activity | 8.17E-03 |
| 79 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 8.99E-03 |
| 80 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 9.48E-03 |
| 81 | GO:0016788: hydrolase activity, acting on ester bonds | 1.03E-02 |
| 82 | GO:0016413: O-acetyltransferase activity | 1.12E-02 |
| 83 | GO:0016168: chlorophyll binding | 1.21E-02 |
| 84 | GO:0030247: polysaccharide binding | 1.31E-02 |
| 85 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.31E-02 |
| 86 | GO:0052689: carboxylic ester hydrolase activity | 1.39E-02 |
| 87 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.51E-02 |
| 88 | GO:0042803: protein homodimerization activity | 1.58E-02 |
| 89 | GO:0008422: beta-glucosidase activity | 1.77E-02 |
| 90 | GO:0004185: serine-type carboxypeptidase activity | 1.99E-02 |
| 91 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.10E-02 |
| 92 | GO:0015293: symporter activity | 2.16E-02 |
| 93 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.22E-02 |
| 94 | GO:0016298: lipase activity | 2.52E-02 |
| 95 | GO:0015171: amino acid transmembrane transporter activity | 2.65E-02 |
| 96 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.84E-02 |
| 97 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.96E-02 |
| 98 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.96E-02 |
| 99 | GO:0016758: transferase activity, transferring hexosyl groups | 3.64E-02 |
| 100 | GO:0016829: lyase activity | 3.92E-02 |
| 101 | GO:0030246: carbohydrate binding | 4.42E-02 |
| 102 | GO:0005507: copper ion binding | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097708: intracellular vesicle | 0.00E+00 |
| 2 | GO:0005764: lysosome | 2.82E-10 |
| 3 | GO:0005773: vacuole | 3.71E-08 |
| 4 | GO:0005829: cytosol | 2.48E-06 |
| 5 | GO:0048046: apoplast | 3.92E-06 |
| 6 | GO:0005615: extracellular space | 7.99E-06 |
| 7 | GO:0005783: endoplasmic reticulum | 8.07E-04 |
| 8 | GO:0031359: integral component of chloroplast outer membrane | 1.46E-03 |
| 9 | GO:0010494: cytoplasmic stress granule | 2.18E-03 |
| 10 | GO:0016604: nuclear body | 2.43E-03 |
| 11 | GO:0016020: membrane | 3.69E-03 |
| 12 | GO:0005759: mitochondrial matrix | 5.94E-03 |
| 13 | GO:0009523: photosystem II | 8.58E-03 |
| 14 | GO:0016021: integral component of membrane | 1.07E-02 |
| 15 | GO:0000932: P-body | 1.17E-02 |
| 16 | GO:0005886: plasma membrane | 1.32E-02 |
| 17 | GO:0009707: chloroplast outer membrane | 1.41E-02 |
| 18 | GO:0009536: plastid | 2.11E-02 |
| 19 | GO:0009505: plant-type cell wall | 2.17E-02 |
| 20 | GO:0005774: vacuolar membrane | 2.43E-02 |
| 21 | GO:0005887: integral component of plasma membrane | 2.52E-02 |
| 22 | GO:0005747: mitochondrial respiratory chain complex I | 2.84E-02 |
| 23 | GO:0016607: nuclear speck | 2.84E-02 |
| 24 | GO:0009706: chloroplast inner membrane | 3.16E-02 |
| 25 | GO:0005654: nucleoplasm | 3.64E-02 |
| 26 | GO:0005576: extracellular region | 3.72E-02 |
| 27 | GO:0005623: cell | 3.78E-02 |
| 28 | GO:0009705: plant-type vacuole membrane | 4.67E-02 |
| 29 | GO:0005794: Golgi apparatus | 4.75E-02 |