Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032497: detection of lipopolysaccharide0.00E+00
2GO:2000636: positive regulation of primary miRNA processing0.00E+00
3GO:0035420: MAPK cascade involved in innate immune response0.00E+00
4GO:0032499: detection of peptidoglycan0.00E+00
5GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
6GO:2000630: positive regulation of miRNA metabolic process0.00E+00
7GO:0080050: regulation of seed development0.00E+00
8GO:0042353: fucose biosynthetic process0.00E+00
9GO:0007141: male meiosis I0.00E+00
10GO:0019481: L-alanine catabolic process, by transamination0.00E+00
11GO:0006468: protein phosphorylation1.12E-06
12GO:0071323: cellular response to chitin3.27E-06
13GO:0046777: protein autophosphorylation2.48E-05
14GO:1900150: regulation of defense response to fungus4.08E-05
15GO:0006904: vesicle docking involved in exocytosis4.13E-05
16GO:0032491: detection of molecule of fungal origin8.09E-05
17GO:0034628: 'de novo' NAD biosynthetic process from aspartate8.09E-05
18GO:0071366: cellular response to indolebutyric acid stimulus8.09E-05
19GO:0042742: defense response to bacterium1.15E-04
20GO:0006887: exocytosis1.36E-04
21GO:0070588: calcium ion transmembrane transport1.93E-04
22GO:0046740: transport of virus in host, cell to cell1.93E-04
23GO:2000071: regulation of defense response by callose deposition1.93E-04
24GO:0009863: salicylic acid mediated signaling pathway2.41E-04
25GO:0042344: indole glucosinolate catabolic process3.24E-04
26GO:0051176: positive regulation of sulfur metabolic process3.24E-04
27GO:0045793: positive regulation of cell size3.24E-04
28GO:0009742: brassinosteroid mediated signaling pathway3.99E-04
29GO:0015696: ammonium transport4.66E-04
30GO:0010071: root meristem specification4.66E-04
31GO:0030100: regulation of endocytosis4.66E-04
32GO:0010193: response to ozone5.92E-04
33GO:0071219: cellular response to molecule of bacterial origin6.21E-04
34GO:1902347: response to strigolactone6.21E-04
35GO:0072488: ammonium transmembrane transport6.21E-04
36GO:0045038: protein import into chloroplast thylakoid membrane7.86E-04
37GO:0009435: NAD biosynthetic process7.86E-04
38GO:0007166: cell surface receptor signaling pathway8.72E-04
39GO:0010468: regulation of gene expression9.19E-04
40GO:0006796: phosphate-containing compound metabolic process9.59E-04
41GO:0010337: regulation of salicylic acid metabolic process9.59E-04
42GO:0015691: cadmium ion transport9.59E-04
43GO:0006751: glutathione catabolic process9.59E-04
44GO:0010256: endomembrane system organization9.59E-04
45GO:0048232: male gamete generation9.59E-04
46GO:0008219: cell death1.09E-03
47GO:0009817: defense response to fungus, incompatible interaction1.09E-03
48GO:0080113: regulation of seed growth1.14E-03
49GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.14E-03
50GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway1.34E-03
51GO:0006955: immune response1.34E-03
52GO:0045087: innate immune response1.36E-03
53GO:0010078: maintenance of root meristem identity1.54E-03
54GO:0010492: maintenance of shoot apical meristem identity1.54E-03
55GO:0009060: aerobic respiration1.98E-03
56GO:0098656: anion transmembrane transport1.98E-03
57GO:0007064: mitotic sister chromatid cohesion2.46E-03
58GO:0051026: chiasma assembly2.46E-03
59GO:0019538: protein metabolic process2.46E-03
60GO:0052544: defense response by callose deposition in cell wall2.71E-03
61GO:0009626: plant-type hypersensitive response2.93E-03
62GO:0016310: phosphorylation3.09E-03
63GO:0009624: response to nematode3.31E-03
64GO:0046854: phosphatidylinositol phosphorylation3.81E-03
65GO:0009969: xyloglucan biosynthetic process3.81E-03
66GO:0080188: RNA-directed DNA methylation3.81E-03
67GO:0016226: iron-sulfur cluster assembly5.34E-03
68GO:0007131: reciprocal meiotic recombination5.34E-03
69GO:0031348: negative regulation of defense response5.34E-03
70GO:0010017: red or far-red light signaling pathway5.34E-03
71GO:0035556: intracellular signal transduction5.99E-03
72GO:0006817: phosphate ion transport6.01E-03
73GO:0010089: xylem development6.01E-03
74GO:0042147: retrograde transport, endosome to Golgi6.35E-03
75GO:0080022: primary root development6.70E-03
76GO:0009960: endosperm development7.06E-03
77GO:0048544: recognition of pollen7.42E-03
78GO:0002229: defense response to oomycetes8.17E-03
79GO:0006310: DNA recombination9.34E-03
80GO:0001666: response to hypoxia1.06E-02
81GO:0010200: response to chitin1.13E-02
82GO:0009627: systemic acquired resistance1.14E-02
83GO:0016049: cell growth1.23E-02
84GO:0009813: flavonoid biosynthetic process1.32E-02
85GO:0009637: response to blue light1.51E-02
86GO:0006897: endocytosis1.70E-02
87GO:0051707: response to other organism1.80E-02
88GO:0006855: drug transmembrane transport2.01E-02
89GO:0006260: DNA replication2.07E-02
90GO:0031347: regulation of defense response2.07E-02
91GO:0046686: response to cadmium ion2.40E-02
92GO:0009620: response to fungus2.69E-02
93GO:0009555: pollen development2.87E-02
94GO:0018105: peptidyl-serine phosphorylation2.93E-02
95GO:0000398: mRNA splicing, via spliceosome3.17E-02
96GO:0007165: signal transduction3.44E-02
97GO:0009845: seed germination3.56E-02
98GO:0006952: defense response3.93E-02
99GO:0007623: circadian rhythm4.23E-02
100GO:0006470: protein dephosphorylation4.65E-02
RankGO TermAdjusted P value
1GO:2001080: chitosan binding0.00E+00
2GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
3GO:0010857: calcium-dependent protein kinase activity0.00E+00
4GO:0008987: quinolinate synthetase A activity0.00E+00
5GO:0016301: kinase activity2.28E-07
6GO:0005524: ATP binding4.69E-07
7GO:0004674: protein serine/threonine kinase activity7.67E-06
8GO:0004675: transmembrane receptor protein serine/threonine kinase activity6.60E-05
9GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity8.09E-05
10GO:0015085: calcium ion transmembrane transporter activity8.09E-05
11GO:0019888: protein phosphatase regulator activity1.49E-04
12GO:0005388: calcium-transporting ATPase activity1.49E-04
13GO:0003840: gamma-glutamyltransferase activity3.24E-04
14GO:0036374: glutathione hydrolase activity3.24E-04
15GO:0015086: cadmium ion transmembrane transporter activity4.66E-04
16GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity4.66E-04
17GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity4.66E-04
18GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity4.66E-04
19GO:0019199: transmembrane receptor protein kinase activity6.21E-04
20GO:0045431: flavonol synthase activity7.86E-04
21GO:0016462: pyrophosphatase activity9.59E-04
22GO:0008519: ammonium transmembrane transporter activity9.59E-04
23GO:0004709: MAP kinase kinase kinase activity9.59E-04
24GO:0051020: GTPase binding1.14E-03
25GO:0004672: protein kinase activity1.25E-03
26GO:0004143: diacylglycerol kinase activity1.34E-03
27GO:0004427: inorganic diphosphatase activity1.34E-03
28GO:0004714: transmembrane receptor protein tyrosine kinase activity1.54E-03
29GO:0003951: NAD+ kinase activity1.76E-03
30GO:0042803: protein homodimerization activity2.20E-03
31GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity2.46E-03
32GO:0008047: enzyme activator activity2.46E-03
33GO:0005315: inorganic phosphate transmembrane transporter activity3.24E-03
34GO:0008061: chitin binding3.81E-03
35GO:0033612: receptor serine/threonine kinase binding5.02E-03
36GO:0008514: organic anion transmembrane transporter activity6.01E-03
37GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.22E-03
38GO:0046982: protein heterodimerization activity8.63E-03
39GO:0005516: calmodulin binding9.39E-03
40GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity9.75E-03
41GO:0009931: calcium-dependent protein serine/threonine kinase activity1.14E-02
42GO:0004683: calmodulin-dependent protein kinase activity1.19E-02
43GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.41E-02
44GO:0051539: 4 iron, 4 sulfur cluster binding1.65E-02
45GO:0035091: phosphatidylinositol binding1.91E-02
46GO:0031625: ubiquitin protein ligase binding2.40E-02
47GO:0046872: metal ion binding2.75E-02
48GO:0003779: actin binding2.81E-02
49GO:0051082: unfolded protein binding2.87E-02
50GO:0015144: carbohydrate transmembrane transporter activity3.82E-02
51GO:0005351: sugar:proton symporter activity4.16E-02
RankGO TermAdjusted P value
1GO:0045335: phagocytic vesicle0.00E+00
2GO:0005886: plasma membrane2.84E-08
3GO:0070062: extracellular exosome3.27E-06
4GO:0000145: exocyst3.06E-05
5GO:0000159: protein phosphatase type 2A complex1.11E-04
6GO:0080085: signal recognition particle, chloroplast targeting1.93E-04
7GO:0010008: endosome membrane3.03E-04
8GO:0030173: integral component of Golgi membrane1.14E-03
9GO:0015030: Cajal body2.22E-03
10GO:0005768: endosome2.57E-03
11GO:0043234: protein complex4.10E-03
12GO:0000790: nuclear chromatin6.35E-03
13GO:0032580: Golgi cisterna membrane9.34E-03
14GO:0005778: peroxisomal membrane9.75E-03
15GO:0016021: integral component of membrane1.01E-02
16GO:0031902: late endosome membrane1.70E-02
17GO:0005887: integral component of plasma membrane2.20E-02
18GO:0005681: spliceosomal complex2.51E-02
19GO:0012505: endomembrane system2.81E-02
20GO:0005802: trans-Golgi network4.58E-02
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Gene type



Gene DE type