co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G29360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902001: fatty acid transmembrane transport	0.00E+00
2	GO:0009809: lignin biosynthetic process	1.20E-05
3	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.61E-05
4	GO:0071668: plant-type cell wall assembly	4.61E-05
5	GO:0015774: polysaccharide transport	4.61E-05
6	GO:0009805: coumarin biosynthetic process	4.61E-05
7	GO:0055088: lipid homeostasis	4.61E-05
8	GO:0010372: positive regulation of gibberellin biosynthetic process	4.61E-05
9	GO:0015908: fatty acid transport	4.61E-05
10	GO:0009306: protein secretion	4.75E-05
11	GO:0010165: response to X-ray	8.18E-05
12	GO:0006065: UDP-glucuronate biosynthetic process	8.18E-05
13	GO:0052546: cell wall pectin metabolic process	8.18E-05
14	GO:0006556: S-adenosylmethionine biosynthetic process	8.18E-05
15	GO:0009399: nitrogen fixation	1.23E-04
16	GO:0042128: nitrate assimilation	1.36E-04
17	GO:0006542: glutamine biosynthetic process	1.69E-04
18	GO:0045227: capsule polysaccharide biosynthetic process	1.69E-04
19	GO:0033358: UDP-L-arabinose biosynthetic process	1.69E-04
20	GO:0006461: protein complex assembly	2.19E-04
21	GO:0000338: protein deneddylation	3.84E-04
22	GO:0006605: protein targeting	4.43E-04
23	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.43E-04
24	GO:0006402: mRNA catabolic process	4.43E-04
25	GO:0006972: hyperosmotic response	5.05E-04
26	GO:0010208: pollen wall assembly	5.05E-04
27	GO:0009699: phenylpropanoid biosynthetic process	5.05E-04
28	GO:0007062: sister chromatid cohesion	5.68E-04
29	GO:0015706: nitrate transport	8.38E-04
30	GO:0010152: pollen maturation	8.38E-04
31	GO:0000266: mitochondrial fission	8.38E-04
32	GO:0006302: double-strand break repair	9.82E-04
33	GO:0034605: cellular response to heat	9.82E-04
34	GO:0009225: nucleotide-sugar metabolic process	1.06E-03
35	GO:0010167: response to nitrate	1.06E-03
36	GO:0080147: root hair cell development	1.21E-03
37	GO:0007005: mitochondrion organization	1.46E-03
38	GO:0006730: one-carbon metabolic process	1.46E-03
39	GO:0016226: iron-sulfur cluster assembly	1.46E-03
40	GO:0006012: galactose metabolic process	1.54E-03
41	GO:0007059: chromosome segregation	2.00E-03
42	GO:0009646: response to absence of light	2.00E-03
43	GO:0002229: defense response to oomycetes	2.19E-03
44	GO:0031047: gene silencing by RNA	2.29E-03
45	GO:0030163: protein catabolic process	2.39E-03
46	GO:0016049: cell growth	3.24E-03
47	GO:0008219: cell death	3.36E-03
48	GO:0009813: flavonoid biosynthetic process	3.47E-03
49	GO:0000724: double-strand break repair via homologous recombination	3.82E-03
50	GO:0006099: tricarboxylic acid cycle	4.06E-03
51	GO:0006839: mitochondrial transport	4.31E-03
52	GO:0009640: photomorphogenesis	4.68E-03
53	GO:0009846: pollen germination	5.48E-03
54	GO:0009585: red, far-red light phototransduction	5.75E-03
55	GO:0009742: brassinosteroid mediated signaling pathway	7.64E-03
56	GO:0009845: seed germination	9.06E-03
57	GO:0010150: leaf senescence	1.08E-02
58	GO:0007166: cell surface receptor signaling pathway	1.18E-02
59	GO:0006810: transport	1.22E-02
60	GO:0009860: pollen tube growth	1.54E-02
61	GO:0007049: cell cycle	1.58E-02
62	GO:0009723: response to ethylene	1.62E-02
63	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.75E-02
64	GO:0046777: protein autophosphorylation	1.79E-02
65	GO:0006886: intracellular protein transport	1.98E-02
66	GO:0006869: lipid transport	2.07E-02
67	GO:0006397: mRNA processing	2.32E-02
68	GO:0009753: response to jasmonic acid	2.36E-02
69	GO:0055114: oxidation-reduction process	2.66E-02
70	GO:0009651: response to salt stress	2.80E-02
71	GO:0009416: response to light stimulus	3.39E-02
72	GO:0009611: response to wounding	3.44E-02
73	GO:0051301: cell division	3.60E-02
74	GO:0055085: transmembrane transport	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
2	GO:0015245: fatty acid transporter activity	1.77E-05
3	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.77E-05
4	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.18E-05
5	GO:0004478: methionine adenosyltransferase activity	8.18E-05
6	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.60E-04
7	GO:0000062: fatty-acyl-CoA binding	1.69E-04
8	GO:0050373: UDP-arabinose 4-epimerase activity	1.69E-04
9	GO:0004356: glutamate-ammonia ligase activity	2.19E-04
10	GO:0004656: procollagen-proline 4-dioxygenase activity	3.27E-04
11	GO:0003978: UDP-glucose 4-epimerase activity	3.27E-04
12	GO:0052747: sinapyl alcohol dehydrogenase activity	4.43E-04
13	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.43E-04
14	GO:0015112: nitrate transmembrane transporter activity	6.32E-04
15	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.38E-04
16	GO:0005515: protein binding	9.87E-04
17	GO:0031418: L-ascorbic acid binding	1.21E-03
18	GO:0033612: receptor serine/threonine kinase binding	1.37E-03
19	GO:0004518: nuclease activity	2.29E-03
20	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.94E-03
21	GO:0051537: 2 iron, 2 sulfur cluster binding	4.94E-03
22	GO:0051287: NAD binding	5.34E-03
23	GO:0005507: copper ion binding	5.84E-03
24	GO:0016746: transferase activity, transferring acyl groups	7.49E-03
25	GO:0005506: iron ion binding	8.17E-03
26	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.02E-02
27	GO:0015297: antiporter activity	1.04E-02
28	GO:0008017: microtubule binding	1.11E-02
29	GO:0004672: protein kinase activity	1.22E-02
30	GO:0042802: identical protein binding	1.27E-02
31	GO:0046982: protein heterodimerization activity	1.44E-02
32	GO:0005524: ATP binding	1.51E-02
33	GO:0004497: monooxygenase activity	1.70E-02
34	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.05E-02
35	GO:0003924: GTPase activity	2.25E-02
36	GO:0008289: lipid binding	2.85E-02
37	GO:0016301: kinase activity	4.04E-02
38	GO:0004674: protein serine/threonine kinase activity	4.10E-02
39	GO:0005525: GTP binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0045252: oxoglutarate dehydrogenase complex	1.77E-05
2	GO:0016442: RISC complex	1.77E-05
3	GO:0030915: Smc5-Smc6 complex	2.19E-04
4	GO:0010008: endosome membrane	4.39E-04
5	GO:0010494: cytoplasmic stress granule	5.68E-04
6	GO:0008180: COP9 signalosome	5.68E-04
7	GO:0005783: endoplasmic reticulum	5.85E-04
8	GO:0005829: cytosol	6.68E-04
9	GO:0048471: perinuclear region of cytoplasm	7.68E-04
10	GO:0005938: cell cortex	9.08E-04
11	GO:0005768: endosome	1.01E-03
12	GO:0016021: integral component of membrane	1.05E-03
13	GO:0043234: protein complex	1.13E-03
14	GO:0005758: mitochondrial intermembrane space	1.21E-03
15	GO:0005886: plasma membrane	1.41E-03
16	GO:0009506: plasmodesma	1.78E-03
17	GO:0005789: endoplasmic reticulum membrane	1.96E-03
18	GO:0009504: cell plate	2.09E-03
19	GO:0032580: Golgi cisterna membrane	2.49E-03
20	GO:0000932: P-body	2.80E-03
21	GO:0005635: nuclear envelope	6.03E-03
22	GO:0005618: cell wall	6.54E-03
23	GO:0005802: trans-Golgi network	6.57E-03
24	GO:0009706: chloroplast inner membrane	7.34E-03
25	GO:0005737: cytoplasm	8.04E-03
26	GO:0009524: phragmoplast	8.90E-03
27	GO:0000139: Golgi membrane	1.13E-02
28	GO:0005794: Golgi apparatus	1.20E-02
29	GO:0005874: microtubule	1.66E-02
30	GO:0005743: mitochondrial inner membrane	2.14E-02
31	GO:0043231: intracellular membrane-bounded organelle	2.41E-02
32	GO:0022626: cytosolic ribosome	3.28E-02