GO Enrichment Analysis of Co-expressed Genes with
AT3G29290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0016120: carotene biosynthetic process | 6.15E-07 |
| 4 | GO:0009657: plastid organization | 3.56E-06 |
| 5 | GO:0031426: polycistronic mRNA processing | 1.48E-05 |
| 6 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.48E-05 |
| 7 | GO:1904964: positive regulation of phytol biosynthetic process | 1.48E-05 |
| 8 | GO:0080005: photosystem stoichiometry adjustment | 3.88E-05 |
| 9 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.88E-05 |
| 10 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.88E-05 |
| 11 | GO:0051604: protein maturation | 6.95E-05 |
| 12 | GO:0006013: mannose metabolic process | 6.95E-05 |
| 13 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.05E-04 |
| 14 | GO:2001141: regulation of RNA biosynthetic process | 1.05E-04 |
| 15 | GO:0010239: chloroplast mRNA processing | 1.05E-04 |
| 16 | GO:0042128: nitrate assimilation | 1.07E-04 |
| 17 | GO:0009765: photosynthesis, light harvesting | 1.45E-04 |
| 18 | GO:0016123: xanthophyll biosynthetic process | 1.88E-04 |
| 19 | GO:0010114: response to red light | 2.14E-04 |
| 20 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.34E-04 |
| 21 | GO:0042549: photosystem II stabilization | 2.34E-04 |
| 22 | GO:0006396: RNA processing | 4.24E-04 |
| 23 | GO:0071482: cellular response to light stimulus | 4.37E-04 |
| 24 | GO:0048507: meristem development | 4.93E-04 |
| 25 | GO:0006352: DNA-templated transcription, initiation | 6.67E-04 |
| 26 | GO:0006415: translational termination | 6.67E-04 |
| 27 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.29E-04 |
| 28 | GO:2000012: regulation of auxin polar transport | 7.91E-04 |
| 29 | GO:0010468: regulation of gene expression | 8.26E-04 |
| 30 | GO:0010207: photosystem II assembly | 8.55E-04 |
| 31 | GO:0007017: microtubule-based process | 1.12E-03 |
| 32 | GO:0016117: carotenoid biosynthetic process | 1.49E-03 |
| 33 | GO:0000413: protein peptidyl-prolyl isomerization | 1.57E-03 |
| 34 | GO:0009791: post-embryonic development | 1.81E-03 |
| 35 | GO:0010583: response to cyclopentenone | 1.98E-03 |
| 36 | GO:0010027: thylakoid membrane organization | 2.42E-03 |
| 37 | GO:0018298: protein-chromophore linkage | 2.90E-03 |
| 38 | GO:0009637: response to blue light | 3.40E-03 |
| 39 | GO:0006857: oligopeptide transport | 5.19E-03 |
| 40 | GO:0006417: regulation of translation | 5.31E-03 |
| 41 | GO:0009658: chloroplast organization | 1.25E-02 |
| 42 | GO:0046777: protein autophosphorylation | 1.53E-02 |
| 43 | GO:0015979: photosynthesis | 1.60E-02 |
| 44 | GO:0016042: lipid catabolic process | 1.89E-02 |
| 45 | GO:0006397: mRNA processing | 1.99E-02 |
| 46 | GO:0009753: response to jasmonic acid | 2.02E-02 |
| 47 | GO:0009611: response to wounding | 2.95E-02 |
| 48 | GO:0055085: transmembrane transport | 3.44E-02 |
| 49 | GO:0006457: protein folding | 3.49E-02 |
| 50 | GO:0006511: ubiquitin-dependent protein catabolic process | 3.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 4 | GO:0004751: ribose-5-phosphate isomerase activity | 6.95E-05 |
| 5 | GO:0016149: translation release factor activity, codon specific | 1.05E-04 |
| 6 | GO:0048027: mRNA 5'-UTR binding | 1.05E-04 |
| 7 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.45E-04 |
| 8 | GO:0001053: plastid sigma factor activity | 1.45E-04 |
| 9 | GO:0016987: sigma factor activity | 1.45E-04 |
| 10 | GO:0043495: protein anchor | 1.45E-04 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.50E-04 |
| 12 | GO:0004559: alpha-mannosidase activity | 2.82E-04 |
| 13 | GO:0019899: enzyme binding | 3.32E-04 |
| 14 | GO:0003747: translation release factor activity | 4.93E-04 |
| 15 | GO:0005528: FK506 binding | 1.05E-03 |
| 16 | GO:0043424: protein histidine kinase binding | 1.12E-03 |
| 17 | GO:0022891: substrate-specific transmembrane transporter activity | 1.34E-03 |
| 18 | GO:0003727: single-stranded RNA binding | 1.41E-03 |
| 19 | GO:0016168: chlorophyll binding | 2.52E-03 |
| 20 | GO:0008236: serine-type peptidase activity | 2.80E-03 |
| 21 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.26E-03 |
| 22 | GO:0043621: protein self-association | 4.26E-03 |
| 23 | GO:0015293: symporter activity | 4.37E-03 |
| 24 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.95E-03 |
| 25 | GO:0003777: microtubule motor activity | 5.31E-03 |
| 26 | GO:0031625: ubiquitin protein ligase binding | 5.31E-03 |
| 27 | GO:0004650: polygalacturonase activity | 5.93E-03 |
| 28 | GO:0016746: transferase activity, transferring acyl groups | 6.44E-03 |
| 29 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.51E-03 |
| 30 | GO:0042802: identical protein binding | 1.09E-02 |
| 31 | GO:0016788: hydrolase activity, acting on ester bonds | 1.27E-02 |
| 32 | GO:0008233: peptidase activity | 1.44E-02 |
| 33 | GO:0061630: ubiquitin protein ligase activity | 1.51E-02 |
| 34 | GO:0052689: carboxylic ester hydrolase activity | 1.57E-02 |
| 35 | GO:0030246: carbohydrate binding | 3.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.37E-10 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.32E-06 |
| 3 | GO:0031969: chloroplast membrane | 3.37E-06 |
| 4 | GO:0009523: photosystem II | 5.72E-05 |
| 5 | GO:0042646: plastid nucleoid | 1.05E-04 |
| 6 | GO:0009526: plastid envelope | 1.45E-04 |
| 7 | GO:0030286: dynein complex | 1.45E-04 |
| 8 | GO:0055035: plastid thylakoid membrane | 1.88E-04 |
| 9 | GO:0016363: nuclear matrix | 2.82E-04 |
| 10 | GO:0009533: chloroplast stromal thylakoid | 3.32E-04 |
| 11 | GO:0009534: chloroplast thylakoid | 4.62E-04 |
| 12 | GO:0042644: chloroplast nucleoid | 4.93E-04 |
| 13 | GO:0009543: chloroplast thylakoid lumen | 5.13E-04 |
| 14 | GO:0090404: pollen tube tip | 6.67E-04 |
| 15 | GO:0005875: microtubule associated complex | 9.85E-04 |
| 16 | GO:0042651: thylakoid membrane | 1.12E-03 |
| 17 | GO:0009941: chloroplast envelope | 1.12E-03 |
| 18 | GO:0031977: thylakoid lumen | 3.82E-03 |
| 19 | GO:0009505: plant-type cell wall | 8.35E-03 |
| 20 | GO:0009570: chloroplast stroma | 9.33E-03 |
| 21 | GO:0005774: vacuolar membrane | 2.32E-02 |
| 22 | GO:0009579: thylakoid | 3.29E-02 |