co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G29034

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045730: respiratory burst	0.00E+00
2	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
3	GO:1902001: fatty acid transmembrane transport	0.00E+00
4	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
5	GO:1903086: negative regulation of sinapate ester biosynthetic process	0.00E+00
6	GO:0018063: cytochrome c-heme linkage	0.00E+00
7	GO:0006005: L-fucose biosynthetic process	0.00E+00
8	GO:0009699: phenylpropanoid biosynthetic process	3.71E-08
9	GO:0006065: UDP-glucuronate biosynthetic process	6.94E-06
10	GO:0052546: cell wall pectin metabolic process	6.94E-06
11	GO:0009611: response to wounding	1.03E-05
12	GO:0002679: respiratory burst involved in defense response	1.60E-05
13	GO:0015706: nitrate transport	1.73E-05
14	GO:0045227: capsule polysaccharide biosynthetic process	2.94E-05
15	GO:0033358: UDP-L-arabinose biosynthetic process	2.94E-05
16	GO:0009225: nucleotide-sugar metabolic process	3.21E-05
17	GO:0080167: response to karrikin	4.14E-05
18	GO:0010200: response to chitin	4.52E-05
19	GO:0009306: protein secretion	9.23E-05
20	GO:0006605: protein targeting	1.64E-04
21	GO:0042350: GDP-L-fucose biosynthetic process	2.00E-04
22	GO:0046244: salicylic acid catabolic process	2.00E-04
23	GO:0018920: glyphosate metabolic process	2.00E-04
24	GO:0003400: regulation of COPII vesicle coating	2.00E-04
25	GO:0080157: regulation of plant-type cell wall organization or biogenesis	2.00E-04
26	GO:0009808: lignin metabolic process	2.04E-04
27	GO:0051865: protein autoubiquitination	2.49E-04
28	GO:0042128: nitrate assimilation	3.41E-04
29	GO:0006032: chitin catabolic process	3.48E-04
30	GO:0071668: plant-type cell wall assembly	4.48E-04
31	GO:0046939: nucleotide phosphorylation	4.48E-04
32	GO:0009805: coumarin biosynthetic process	4.48E-04
33	GO:0055088: lipid homeostasis	4.48E-04
34	GO:0010372: positive regulation of gibberellin biosynthetic process	4.48E-04
35	GO:0015908: fatty acid transport	4.48E-04
36	GO:0000266: mitochondrial fission	4.63E-04
37	GO:0055046: microgametogenesis	5.25E-04
38	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	7.29E-04
39	GO:0010366: negative regulation of ethylene biosynthetic process	7.29E-04
40	GO:0070475: rRNA base methylation	7.29E-04
41	GO:0006556: S-adenosylmethionine biosynthetic process	7.29E-04
42	GO:0006468: protein phosphorylation	8.83E-04
43	GO:0016998: cell wall macromolecule catabolic process	9.79E-04
44	GO:0043207: response to external biotic stimulus	1.04E-03
45	GO:0009800: cinnamic acid biosynthetic process	1.04E-03
46	GO:0009809: lignin biosynthetic process	1.13E-03
47	GO:0006012: galactose metabolic process	1.16E-03
48	GO:0006817: phosphate ion transport	1.26E-03
49	GO:1902347: response to strigolactone	1.38E-03
50	GO:0033320: UDP-D-xylose biosynthetic process	1.38E-03
51	GO:2000762: regulation of phenylpropanoid metabolic process	1.76E-03
52	GO:0002229: defense response to oomycetes	1.95E-03
53	GO:0000470: maturation of LSU-rRNA	2.17E-03
54	GO:0042732: D-xylose metabolic process	2.17E-03
55	GO:0006559: L-phenylalanine catabolic process	2.17E-03
56	GO:0033365: protein localization to organelle	2.17E-03
57	GO:0009845: seed germination	2.57E-03
58	GO:0009423: chorismate biosynthetic process	2.60E-03
59	GO:0098869: cellular oxidant detoxification	3.06E-03
60	GO:0006744: ubiquinone biosynthetic process	3.06E-03
61	GO:0016036: cellular response to phosphate starvation	3.20E-03
62	GO:0009753: response to jasmonic acid	3.22E-03
63	GO:0016049: cell growth	3.47E-03
64	GO:0045010: actin nucleation	3.55E-03
65	GO:0048658: anther wall tapetum development	3.55E-03
66	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.55E-03
67	GO:0009819: drought recovery	3.55E-03
68	GO:0006402: mRNA catabolic process	3.55E-03
69	GO:0008219: cell death	3.65E-03
70	GO:0017004: cytochrome complex assembly	4.06E-03
71	GO:0010208: pollen wall assembly	4.06E-03
72	GO:0009932: cell tip growth	4.06E-03
73	GO:0010262: somatic embryogenesis	4.06E-03
74	GO:0007166: cell surface receptor signaling pathway	4.15E-03
75	GO:0010345: suberin biosynthetic process	4.60E-03
76	GO:0055114: oxidation-reduction process	5.11E-03
77	GO:0010215: cellulose microfibril organization	5.74E-03
78	GO:0019538: protein metabolic process	5.74E-03
79	GO:0007064: mitotic sister chromatid cohesion	5.74E-03
80	GO:0042742: defense response to bacterium	5.80E-03
81	GO:0000272: polysaccharide catabolic process	6.34E-03
82	GO:0010015: root morphogenesis	6.34E-03
83	GO:0009698: phenylpropanoid metabolic process	6.34E-03
84	GO:0009073: aromatic amino acid family biosynthetic process	6.34E-03
85	GO:1903507: negative regulation of nucleic acid-templated transcription	6.34E-03
86	GO:0009555: pollen development	6.92E-03
87	GO:0010152: pollen maturation	6.96E-03
88	GO:0046274: lignin catabolic process	7.61E-03
89	GO:0009718: anthocyanin-containing compound biosynthetic process	7.61E-03
90	GO:0006446: regulation of translational initiation	8.28E-03
91	GO:0034605: cellular response to heat	8.28E-03
92	GO:0002237: response to molecule of bacterial origin	8.28E-03
93	GO:0010224: response to UV-B	8.29E-03
94	GO:0090351: seedling development	8.97E-03
95	GO:0010167: response to nitrate	8.97E-03
96	GO:0009626: plant-type hypersensitive response	1.01E-02
97	GO:0080147: root hair cell development	1.04E-02
98	GO:0043622: cortical microtubule organization	1.12E-02
99	GO:0003333: amino acid transmembrane transport	1.19E-02
100	GO:0048511: rhythmic process	1.19E-02
101	GO:0098542: defense response to other organism	1.19E-02
102	GO:0005975: carbohydrate metabolic process	1.20E-02
103	GO:0007005: mitochondrion organization	1.27E-02
104	GO:0006730: one-carbon metabolic process	1.27E-02
105	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.27E-02
106	GO:0040007: growth	1.35E-02
107	GO:0050832: defense response to fungus	1.35E-02
108	GO:0071215: cellular response to abscisic acid stimulus	1.35E-02
109	GO:0009561: megagametogenesis	1.43E-02
110	GO:0042631: cellular response to water deprivation	1.60E-02
111	GO:0048868: pollen tube development	1.69E-02
112	GO:0048544: recognition of pollen	1.78E-02
113	GO:0009556: microsporogenesis	1.87E-02
114	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.88E-02
115	GO:0006979: response to oxidative stress	2.03E-02
116	GO:0032502: developmental process	2.06E-02
117	GO:0031047: gene silencing by RNA	2.06E-02
118	GO:0010090: trichome morphogenesis	2.16E-02
119	GO:0030154: cell differentiation	2.28E-02
120	GO:0006904: vesicle docking involved in exocytosis	2.35E-02
121	GO:0009617: response to bacterium	2.37E-02
122	GO:0016579: protein deubiquitination	2.45E-02
123	GO:0009615: response to virus	2.55E-02
124	GO:0001666: response to hypoxia	2.55E-02
125	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.66E-02
126	GO:0048573: photoperiodism, flowering	2.87E-02
127	GO:0006888: ER to Golgi vesicle-mediated transport	2.87E-02
128	GO:0009817: defense response to fungus, incompatible interaction	3.09E-02
129	GO:0009813: flavonoid biosynthetic process	3.20E-02
130	GO:0010311: lateral root formation	3.20E-02
131	GO:0007568: aging	3.42E-02
132	GO:0006865: amino acid transport	3.54E-02
133	GO:0016051: carbohydrate biosynthetic process	3.65E-02
134	GO:0055085: transmembrane transport	3.65E-02
135	GO:0009867: jasmonic acid mediated signaling pathway	3.65E-02
136	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.93E-02
137	GO:0006839: mitochondrial transport	4.01E-02
138	GO:0006887: exocytosis	4.13E-02
139	GO:0006952: defense response	4.34E-02
140	GO:0008283: cell proliferation	4.37E-02
141	GO:0045892: negative regulation of transcription, DNA-templated	4.61E-02
142	GO:0009965: leaf morphogenesis	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0005522: profilin binding	0.00E+00
2	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
3	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
4	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
5	GO:0003979: UDP-glucose 6-dehydrogenase activity	6.94E-06
6	GO:0015112: nitrate transmembrane transporter activity	8.00E-06
7	GO:0050373: UDP-arabinose 4-epimerase activity	2.94E-05
8	GO:0003978: UDP-glucose 4-epimerase activity	9.69E-05
9	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	2.00E-04
10	GO:0015245: fatty acid transporter activity	2.00E-04
11	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	2.00E-04
12	GO:0050577: GDP-L-fucose synthase activity	2.00E-04
13	GO:0051669: fructan beta-fructosidase activity	2.00E-04
14	GO:0005090: Sar guanyl-nucleotide exchange factor activity	2.00E-04
15	GO:0031219: levanase activity	2.00E-04
16	GO:0004568: chitinase activity	3.48E-04
17	GO:0050062: long-chain-fatty-acyl-CoA reductase activity	4.48E-04
18	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.04E-04
19	GO:0016301: kinase activity	6.61E-04
20	GO:0004674: protein serine/threonine kinase activity	6.66E-04
21	GO:0033897: ribonuclease T2 activity	7.29E-04
22	GO:0004478: methionine adenosyltransferase activity	7.29E-04
23	GO:0045548: phenylalanine ammonia-lyase activity	7.29E-04
24	GO:0019201: nucleotide kinase activity	1.04E-03
25	GO:0003682: chromatin binding	1.26E-03
26	GO:0001085: RNA polymerase II transcription factor binding	1.58E-03
27	GO:0047631: ADP-ribose diphosphatase activity	1.76E-03
28	GO:0002020: protease binding	1.76E-03
29	GO:0048040: UDP-glucuronate decarboxylase activity	2.17E-03
30	GO:0035673: oligopeptide transmembrane transporter activity	2.17E-03
31	GO:0004656: procollagen-proline 4-dioxygenase activity	2.60E-03
32	GO:0080019: fatty-acyl-CoA reductase (alcohol-forming) activity	2.60E-03
33	GO:0051020: GTPase binding	2.60E-03
34	GO:0070403: NAD+ binding	2.60E-03
35	GO:0004017: adenylate kinase activity	2.60E-03
36	GO:0008143: poly(A) binding	3.06E-03
37	GO:0004525: ribonuclease III activity	3.55E-03
38	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.55E-03
39	GO:0004564: beta-fructofuranosidase activity	3.55E-03
40	GO:0052747: sinapyl alcohol dehydrogenase activity	3.55E-03
41	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.65E-03
42	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.21E-03
43	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.60E-03
44	GO:0016207: 4-coumarate-CoA ligase activity	4.60E-03
45	GO:0004575: sucrose alpha-glucosidase activity	5.15E-03
46	GO:0043565: sequence-specific DNA binding	5.66E-03
47	GO:0005524: ATP binding	6.35E-03
48	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.96E-03
49	GO:0015198: oligopeptide transporter activity	6.96E-03
50	GO:0004521: endoribonuclease activity	6.96E-03
51	GO:0051287: NAD binding	7.20E-03
52	GO:0050660: flavin adenine dinucleotide binding	7.34E-03
53	GO:0004022: alcohol dehydrogenase (NAD) activity	7.61E-03
54	GO:0008061: chitin binding	8.97E-03
55	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.01E-02
56	GO:0031418: L-ascorbic acid binding	1.04E-02
57	GO:0003714: transcription corepressor activity	1.04E-02
58	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.16E-02
59	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.19E-02
60	GO:0004540: ribonuclease activity	1.19E-02
61	GO:0033612: receptor serine/threonine kinase binding	1.19E-02
62	GO:0009055: electron carrier activity	1.44E-02
63	GO:0018024: histone-lysine N-methyltransferase activity	1.52E-02
64	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.63E-02
65	GO:0016853: isomerase activity	1.78E-02
66	GO:0050662: coenzyme binding	1.78E-02
67	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.97E-02
68	GO:0044212: transcription regulatory region DNA binding	2.01E-02
69	GO:0004518: nuclease activity	2.06E-02
70	GO:0051015: actin filament binding	2.16E-02
71	GO:0042802: identical protein binding	2.52E-02
72	GO:0008375: acetylglucosaminyltransferase activity	2.76E-02
73	GO:0030247: polysaccharide binding	2.87E-02
74	GO:0005096: GTPase activator activity	3.20E-02
75	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.22E-02
76	GO:0004672: protein kinase activity	3.53E-02
77	GO:0003729: mRNA binding	3.60E-02
78	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.65E-02
79	GO:0020037: heme binding	3.91E-02
80	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.18E-09
2	GO:0016021: integral component of membrane	8.48E-05
3	GO:0005618: cell wall	1.00E-04
4	GO:0030688: preribosome, small subunit precursor	2.00E-04
5	GO:0005911: cell-cell junction	2.00E-04
6	GO:0016442: RISC complex	2.00E-04
7	GO:0032580: Golgi cisterna membrane	2.32E-04
8	GO:0010494: cytoplasmic stress granule	2.49E-04
9	GO:0090404: pollen tube tip	4.04E-04
10	GO:0016363: nuclear matrix	2.60E-03
11	GO:0005667: transcription factor complex	3.12E-03
12	GO:0005783: endoplasmic reticulum	4.59E-03
13	GO:0048471: perinuclear region of cytoplasm	6.34E-03
14	GO:0005938: cell cortex	7.61E-03
15	GO:0030176: integral component of endoplasmic reticulum membrane	8.97E-03
16	GO:0043234: protein complex	9.68E-03
17	GO:0005741: mitochondrial outer membrane	1.19E-02
18	GO:0005770: late endosome	1.69E-02
19	GO:0009504: cell plate	1.87E-02
20	GO:0000145: exocyst	2.06E-02
21	GO:0005694: chromosome	2.06E-02
22	GO:0000932: P-body	2.55E-02
23	GO:0009505: plant-type cell wall	2.80E-02
24	GO:0016020: membrane	3.00E-02
25	GO:0005789: endoplasmic reticulum membrane	3.73E-02
26	GO:0005829: cytosol	4.02E-02
27	GO:0090406: pollen tube	4.37E-02