GO Enrichment Analysis of Co-expressed Genes with
AT3G28956
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 4 | GO:0009913: epidermal cell differentiation | 8.76E-06 |
| 5 | GO:0009631: cold acclimation | 4.52E-05 |
| 6 | GO:0071588: hydrogen peroxide mediated signaling pathway | 5.64E-05 |
| 7 | GO:0043489: RNA stabilization | 5.64E-05 |
| 8 | GO:0010025: wax biosynthetic process | 1.30E-04 |
| 9 | GO:1901000: regulation of response to salt stress | 3.41E-04 |
| 10 | GO:0006241: CTP biosynthetic process | 3.41E-04 |
| 11 | GO:0030100: regulation of endocytosis | 3.41E-04 |
| 12 | GO:0006165: nucleoside diphosphate phosphorylation | 3.41E-04 |
| 13 | GO:0006228: UTP biosynthetic process | 3.41E-04 |
| 14 | GO:0006424: glutamyl-tRNA aminoacylation | 3.41E-04 |
| 15 | GO:0019252: starch biosynthetic process | 3.49E-04 |
| 16 | GO:0000302: response to reactive oxygen species | 3.73E-04 |
| 17 | GO:0010037: response to carbon dioxide | 4.56E-04 |
| 18 | GO:0015976: carbon utilization | 4.56E-04 |
| 19 | GO:0006183: GTP biosynthetic process | 4.56E-04 |
| 20 | GO:0045727: positive regulation of translation | 4.56E-04 |
| 21 | GO:0071585: detoxification of cadmium ion | 4.56E-04 |
| 22 | GO:2000122: negative regulation of stomatal complex development | 4.56E-04 |
| 23 | GO:0006461: protein complex assembly | 5.78E-04 |
| 24 | GO:0009435: NAD biosynthetic process | 5.78E-04 |
| 25 | GO:0032543: mitochondrial translation | 5.78E-04 |
| 26 | GO:0010019: chloroplast-nucleus signaling pathway | 8.44E-04 |
| 27 | GO:0071470: cellular response to osmotic stress | 8.44E-04 |
| 28 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 8.44E-04 |
| 29 | GO:0034599: cellular response to oxidative stress | 9.06E-04 |
| 30 | GO:0050829: defense response to Gram-negative bacterium | 9.85E-04 |
| 31 | GO:0006631: fatty acid metabolic process | 1.02E-03 |
| 32 | GO:0008610: lipid biosynthetic process | 1.13E-03 |
| 33 | GO:0005978: glycogen biosynthetic process | 1.13E-03 |
| 34 | GO:0042255: ribosome assembly | 1.13E-03 |
| 35 | GO:0006353: DNA-templated transcription, termination | 1.13E-03 |
| 36 | GO:0032544: plastid translation | 1.29E-03 |
| 37 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.62E-03 |
| 38 | GO:0000038: very long-chain fatty acid metabolic process | 1.97E-03 |
| 39 | GO:0042545: cell wall modification | 2.01E-03 |
| 40 | GO:0005983: starch catabolic process | 2.16E-03 |
| 41 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.16E-03 |
| 42 | GO:0009409: response to cold | 2.30E-03 |
| 43 | GO:0006807: nitrogen compound metabolic process | 2.36E-03 |
| 44 | GO:0010143: cutin biosynthetic process | 2.56E-03 |
| 45 | GO:0042744: hydrogen peroxide catabolic process | 2.93E-03 |
| 46 | GO:0009833: plant-type primary cell wall biogenesis | 2.97E-03 |
| 47 | GO:0006289: nucleotide-excision repair | 3.18E-03 |
| 48 | GO:0007017: microtubule-based process | 3.40E-03 |
| 49 | GO:0045490: pectin catabolic process | 3.55E-03 |
| 50 | GO:0009411: response to UV | 4.10E-03 |
| 51 | GO:0006284: base-excision repair | 4.34E-03 |
| 52 | GO:0000413: protein peptidyl-prolyl isomerization | 4.83E-03 |
| 53 | GO:0042631: cellular response to water deprivation | 4.83E-03 |
| 54 | GO:0042335: cuticle development | 4.83E-03 |
| 55 | GO:0048825: cotyledon development | 5.61E-03 |
| 56 | GO:0032502: developmental process | 6.15E-03 |
| 57 | GO:0010583: response to cyclopentenone | 6.15E-03 |
| 58 | GO:0006310: DNA recombination | 6.71E-03 |
| 59 | GO:0009817: defense response to fungus, incompatible interaction | 9.13E-03 |
| 60 | GO:0030244: cellulose biosynthetic process | 9.13E-03 |
| 61 | GO:0009813: flavonoid biosynthetic process | 9.45E-03 |
| 62 | GO:0009832: plant-type cell wall biogenesis | 9.45E-03 |
| 63 | GO:0006281: DNA repair | 1.00E-02 |
| 64 | GO:0010119: regulation of stomatal movement | 1.01E-02 |
| 65 | GO:0045087: innate immune response | 1.08E-02 |
| 66 | GO:0008152: metabolic process | 1.10E-02 |
| 67 | GO:0042542: response to hydrogen peroxide | 1.25E-02 |
| 68 | GO:0009640: photomorphogenesis | 1.29E-02 |
| 69 | GO:0006364: rRNA processing | 1.59E-02 |
| 70 | GO:0009585: red, far-red light phototransduction | 1.59E-02 |
| 71 | GO:0009735: response to cytokinin | 1.63E-02 |
| 72 | GO:0043086: negative regulation of catalytic activity | 1.79E-02 |
| 73 | GO:0006396: RNA processing | 2.09E-02 |
| 74 | GO:0009058: biosynthetic process | 2.49E-02 |
| 75 | GO:0009845: seed germination | 2.54E-02 |
| 76 | GO:0006633: fatty acid biosynthetic process | 2.82E-02 |
| 77 | GO:0009451: RNA modification | 3.07E-02 |
| 78 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.27E-02 |
| 79 | GO:0008380: RNA splicing | 3.42E-02 |
| 80 | GO:0071555: cell wall organization | 3.61E-02 |
| 81 | GO:0006979: response to oxidative stress | 3.63E-02 |
| 82 | GO:0009658: chloroplast organization | 4.12E-02 |
| 83 | GO:0015031: protein transport | 4.57E-02 |
| 84 | GO:0080167: response to karrikin | 4.80E-02 |
| 85 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0051060: pullulanase activity | 0.00E+00 |
| 4 | GO:0004130: cytochrome-c peroxidase activity | 8.76E-06 |
| 5 | GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity | 5.64E-05 |
| 6 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 5.64E-05 |
| 7 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 5.64E-05 |
| 8 | GO:0008266: poly(U) RNA binding | 1.02E-04 |
| 9 | GO:0018708: thiol S-methyltransferase activity | 1.37E-04 |
| 10 | GO:0030267: glyoxylate reductase (NADP) activity | 2.34E-04 |
| 11 | GO:0005504: fatty acid binding | 2.34E-04 |
| 12 | GO:0017108: 5'-flap endonuclease activity | 2.34E-04 |
| 13 | GO:0019843: rRNA binding | 2.66E-04 |
| 14 | GO:0004550: nucleoside diphosphate kinase activity | 3.41E-04 |
| 15 | GO:0019104: DNA N-glycosylase activity | 4.56E-04 |
| 16 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 4.56E-04 |
| 17 | GO:0045430: chalcone isomerase activity | 4.56E-04 |
| 18 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 4.56E-04 |
| 19 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 7.07E-04 |
| 20 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 7.07E-04 |
| 21 | GO:0004556: alpha-amylase activity | 7.07E-04 |
| 22 | GO:0016688: L-ascorbate peroxidase activity | 7.07E-04 |
| 23 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 8.44E-04 |
| 24 | GO:0004602: glutathione peroxidase activity | 8.44E-04 |
| 25 | GO:0016209: antioxidant activity | 1.13E-03 |
| 26 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.28E-03 |
| 27 | GO:0045330: aspartyl esterase activity | 1.62E-03 |
| 28 | GO:0030599: pectinesterase activity | 1.95E-03 |
| 29 | GO:0015386: potassium:proton antiporter activity | 1.97E-03 |
| 30 | GO:0016746: transferase activity, transferring acyl groups | 2.13E-03 |
| 31 | GO:0004089: carbonate dehydratase activity | 2.36E-03 |
| 32 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.56E-03 |
| 33 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 2.97E-03 |
| 34 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 2.97E-03 |
| 35 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 2.97E-03 |
| 36 | GO:0005528: FK506 binding | 3.18E-03 |
| 37 | GO:0046910: pectinesterase inhibitor activity | 3.31E-03 |
| 38 | GO:0015079: potassium ion transmembrane transporter activity | 3.40E-03 |
| 39 | GO:0016760: cellulose synthase (UDP-forming) activity | 4.10E-03 |
| 40 | GO:0003727: single-stranded RNA binding | 4.34E-03 |
| 41 | GO:0050662: coenzyme binding | 5.35E-03 |
| 42 | GO:0048038: quinone binding | 5.88E-03 |
| 43 | GO:0004518: nuclease activity | 6.15E-03 |
| 44 | GO:0016759: cellulose synthase activity | 6.71E-03 |
| 45 | GO:0003684: damaged DNA binding | 6.71E-03 |
| 46 | GO:0016791: phosphatase activity | 6.71E-03 |
| 47 | GO:0008237: metallopeptidase activity | 7.00E-03 |
| 48 | GO:0005200: structural constituent of cytoskeleton | 7.00E-03 |
| 49 | GO:0004222: metalloendopeptidase activity | 9.78E-03 |
| 50 | GO:0003729: mRNA binding | 1.24E-02 |
| 51 | GO:0005198: structural molecule activity | 1.40E-02 |
| 52 | GO:0003690: double-stranded DNA binding | 1.63E-02 |
| 53 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.83E-02 |
| 54 | GO:0016874: ligase activity | 1.96E-02 |
| 55 | GO:0016740: transferase activity | 2.18E-02 |
| 56 | GO:0016757: transferase activity, transferring glycosyl groups | 3.49E-02 |
| 57 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.58E-02 |
| 58 | GO:0003824: catalytic activity | 3.95E-02 |
| 59 | GO:0008168: methyltransferase activity | 4.01E-02 |
| 60 | GO:0004601: peroxidase activity | 4.12E-02 |
| 61 | GO:0016788: hydrolase activity, acting on ester bonds | 4.17E-02 |
| 62 | GO:0016491: oxidoreductase activity | 4.73E-02 |
| 63 | GO:0061630: ubiquitin protein ligase activity | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033557: Slx1-Slx4 complex | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 5.49E-14 |
| 3 | GO:0009941: chloroplast envelope | 3.67E-10 |
| 4 | GO:0009579: thylakoid | 9.74E-10 |
| 5 | GO:0009507: chloroplast | 1.07E-08 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.29E-08 |
| 7 | GO:0009534: chloroplast thylakoid | 2.45E-08 |
| 8 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 5.64E-05 |
| 9 | GO:0031977: thylakoid lumen | 6.78E-05 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 2.66E-04 |
| 11 | GO:0005798: Golgi-associated vesicle | 7.07E-04 |
| 12 | GO:0045298: tubulin complex | 1.45E-03 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.45E-03 |
| 14 | GO:0009505: plant-type cell wall | 2.05E-03 |
| 15 | GO:0009508: plastid chromosome | 2.36E-03 |
| 16 | GO:0010287: plastoglobule | 2.45E-03 |
| 17 | GO:0000312: plastid small ribosomal subunit | 2.56E-03 |
| 18 | GO:0005769: early endosome | 2.97E-03 |
| 19 | GO:0071944: cell periphery | 6.43E-03 |
| 20 | GO:0031969: chloroplast membrane | 6.77E-03 |
| 21 | GO:0010319: stromule | 7.00E-03 |
| 22 | GO:0009295: nucleoid | 7.00E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 7.59E-03 |
| 24 | GO:0016020: membrane | 8.66E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 2.04E-02 |
| 26 | GO:0005622: intracellular | 3.17E-02 |
| 27 | GO:0046658: anchored component of plasma membrane | 3.69E-02 |
| 28 | GO:0022627: cytosolic small ribosomal subunit | 3.69E-02 |
| 29 | GO:0048046: apoplast | 3.79E-02 |
| 30 | GO:0005618: cell wall | 4.21E-02 |
| 31 | GO:0005874: microtubule | 4.68E-02 |