GO Enrichment Analysis of Co-expressed Genes with
AT3G28900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990569: UDP-N-acetylglucosamine transmembrane transport | 0.00E+00 |
| 2 | GO:0015789: UDP-N-acetylgalactosamine transport | 0.00E+00 |
| 3 | GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process | 0.00E+00 |
| 4 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 5 | GO:1903857: negative regulation of cytokinin dehydrogenase activity | 0.00E+00 |
| 6 | GO:0006412: translation | 1.10E-179 |
| 7 | GO:0042254: ribosome biogenesis | 9.01E-61 |
| 8 | GO:0000027: ribosomal large subunit assembly | 1.29E-12 |
| 9 | GO:0006626: protein targeting to mitochondrion | 8.70E-08 |
| 10 | GO:0000028: ribosomal small subunit assembly | 2.75E-07 |
| 11 | GO:0009955: adaxial/abaxial pattern specification | 8.00E-06 |
| 12 | GO:1902626: assembly of large subunit precursor of preribosome | 2.78E-05 |
| 13 | GO:0002181: cytoplasmic translation | 2.78E-05 |
| 14 | GO:0042274: ribosomal small subunit biogenesis | 1.06E-04 |
| 15 | GO:0045040: protein import into mitochondrial outer membrane | 2.34E-04 |
| 16 | GO:0009735: response to cytokinin | 2.40E-04 |
| 17 | GO:0006414: translational elongation | 2.41E-04 |
| 18 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.26E-04 |
| 19 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.26E-04 |
| 20 | GO:1901349: glucosinolate transport | 4.26E-04 |
| 21 | GO:0090449: phloem glucosinolate loading | 4.26E-04 |
| 22 | GO:1990258: histone glutamine methylation | 4.26E-04 |
| 23 | GO:0018002: N-terminal peptidyl-glutamic acid acetylation | 4.26E-04 |
| 24 | GO:0006407: rRNA export from nucleus | 4.26E-04 |
| 25 | GO:0006475: internal protein amino acid acetylation | 4.26E-04 |
| 26 | GO:0015801: aromatic amino acid transport | 4.26E-04 |
| 27 | GO:0017198: N-terminal peptidyl-serine acetylation | 4.26E-04 |
| 28 | GO:0030490: maturation of SSU-rRNA | 4.26E-04 |
| 29 | GO:0000494: box C/D snoRNA 3'-end processing | 4.26E-04 |
| 30 | GO:0006364: rRNA processing | 8.23E-04 |
| 31 | GO:0000387: spliceosomal snRNP assembly | 8.75E-04 |
| 32 | GO:0009967: positive regulation of signal transduction | 9.21E-04 |
| 33 | GO:0015786: UDP-glucose transport | 9.21E-04 |
| 34 | GO:0048569: post-embryonic animal organ development | 9.21E-04 |
| 35 | GO:0006820: anion transport | 1.34E-03 |
| 36 | GO:0015783: GDP-fucose transport | 1.50E-03 |
| 37 | GO:0034227: tRNA thio-modification | 1.50E-03 |
| 38 | GO:0042256: mature ribosome assembly | 1.50E-03 |
| 39 | GO:0006446: regulation of translational initiation | 1.72E-03 |
| 40 | GO:0009651: response to salt stress | 2.14E-03 |
| 41 | GO:0006241: CTP biosynthetic process | 2.17E-03 |
| 42 | GO:0072334: UDP-galactose transmembrane transport | 2.17E-03 |
| 43 | GO:0006165: nucleoside diphosphate phosphorylation | 2.17E-03 |
| 44 | GO:0006228: UTP biosynthetic process | 2.17E-03 |
| 45 | GO:0006164: purine nucleotide biosynthetic process | 2.17E-03 |
| 46 | GO:0070301: cellular response to hydrogen peroxide | 2.17E-03 |
| 47 | GO:0030150: protein import into mitochondrial matrix | 2.38E-03 |
| 48 | GO:0015992: proton transport | 2.89E-03 |
| 49 | GO:0006183: GTP biosynthetic process | 2.91E-03 |
| 50 | GO:0010363: regulation of plant-type hypersensitive response | 2.91E-03 |
| 51 | GO:0040007: growth | 3.45E-03 |
| 52 | GO:0009965: leaf morphogenesis | 3.64E-03 |
| 53 | GO:0031167: rRNA methylation | 3.73E-03 |
| 54 | GO:1902183: regulation of shoot apical meristem development | 3.73E-03 |
| 55 | GO:0001731: formation of translation preinitiation complex | 4.61E-03 |
| 56 | GO:0000470: maturation of LSU-rRNA | 4.61E-03 |
| 57 | GO:0043248: proteasome assembly | 4.61E-03 |
| 58 | GO:0000911: cytokinesis by cell plate formation | 5.57E-03 |
| 59 | GO:0015031: protein transport | 8.50E-03 |
| 60 | GO:0000398: mRNA splicing, via spliceosome | 8.65E-03 |
| 61 | GO:0001510: RNA methylation | 8.79E-03 |
| 62 | GO:0001558: regulation of cell growth | 8.79E-03 |
| 63 | GO:0006526: arginine biosynthetic process | 8.79E-03 |
| 64 | GO:0010204: defense response signaling pathway, resistance gene-independent | 8.79E-03 |
| 65 | GO:0009245: lipid A biosynthetic process | 9.98E-03 |
| 66 | GO:0006189: 'de novo' IMP biosynthetic process | 9.98E-03 |
| 67 | GO:0015780: nucleotide-sugar transport | 9.98E-03 |
| 68 | GO:0098656: anion transmembrane transport | 9.98E-03 |
| 69 | GO:0009793: embryo development ending in seed dormancy | 1.23E-02 |
| 70 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 1.25E-02 |
| 71 | GO:0006913: nucleocytoplasmic transport | 1.39E-02 |
| 72 | GO:0010015: root morphogenesis | 1.39E-02 |
| 73 | GO:0010102: lateral root morphogenesis | 1.67E-02 |
| 74 | GO:0008283: cell proliferation | 1.82E-02 |
| 75 | GO:0048467: gynoecium development | 1.82E-02 |
| 76 | GO:0009644: response to high light intensity | 1.97E-02 |
| 77 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.21E-02 |
| 78 | GO:0006406: mRNA export from nucleus | 2.30E-02 |
| 79 | GO:0051302: regulation of cell division | 2.47E-02 |
| 80 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.55E-02 |
| 81 | GO:0061077: chaperone-mediated protein folding | 2.64E-02 |
| 82 | GO:0003333: amino acid transmembrane transport | 2.64E-02 |
| 83 | GO:0007005: mitochondrion organization | 2.82E-02 |
| 84 | GO:0071215: cellular response to abscisic acid stimulus | 3.00E-02 |
| 85 | GO:0010584: pollen exine formation | 3.18E-02 |
| 86 | GO:0008033: tRNA processing | 3.56E-02 |
| 87 | GO:0000413: protein peptidyl-prolyl isomerization | 3.56E-02 |
| 88 | GO:0015991: ATP hydrolysis coupled proton transport | 3.56E-02 |
| 89 | GO:0010090: trichome morphogenesis | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 2 | GO:0004055: argininosuccinate synthase activity | 0.00E+00 |
| 3 | GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity | 0.00E+00 |
| 4 | GO:0003735: structural constituent of ribosome | 2.23E-225 |
| 5 | GO:0003729: mRNA binding | 8.07E-39 |
| 6 | GO:0019843: rRNA binding | 1.31E-16 |
| 7 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.08E-05 |
| 8 | GO:0008097: 5S rRNA binding | 6.06E-05 |
| 9 | GO:1990189: peptide-serine-N-acetyltransferase activity | 4.26E-04 |
| 10 | GO:1990190: peptide-glutamate-N-acetyltransferase activity | 4.26E-04 |
| 11 | GO:0048037: cofactor binding | 4.26E-04 |
| 12 | GO:0090448: glucosinolate:proton symporter activity | 4.26E-04 |
| 13 | GO:1990259: histone-glutamine methyltransferase activity | 4.26E-04 |
| 14 | GO:0015288: porin activity | 5.08E-04 |
| 15 | GO:0008308: voltage-gated anion channel activity | 6.20E-04 |
| 16 | GO:0001055: RNA polymerase II activity | 8.75E-04 |
| 17 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 9.21E-04 |
| 18 | GO:0005078: MAP-kinase scaffold activity | 9.21E-04 |
| 19 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 9.21E-04 |
| 20 | GO:0015173: aromatic amino acid transmembrane transporter activity | 9.21E-04 |
| 21 | GO:0004750: ribulose-phosphate 3-epimerase activity | 9.21E-04 |
| 22 | GO:0001054: RNA polymerase I activity | 1.17E-03 |
| 23 | GO:0001056: RNA polymerase III activity | 1.34E-03 |
| 24 | GO:0070181: small ribosomal subunit rRNA binding | 1.50E-03 |
| 25 | GO:0008649: rRNA methyltransferase activity | 1.50E-03 |
| 26 | GO:0005457: GDP-fucose transmembrane transporter activity | 1.50E-03 |
| 27 | GO:0015266: protein channel activity | 1.52E-03 |
| 28 | GO:0005460: UDP-glucose transmembrane transporter activity | 2.17E-03 |
| 29 | GO:0004550: nucleoside diphosphate kinase activity | 2.17E-03 |
| 30 | GO:0003723: RNA binding | 2.44E-03 |
| 31 | GO:0004298: threonine-type endopeptidase activity | 2.89E-03 |
| 32 | GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 2.91E-03 |
| 33 | GO:0005459: UDP-galactose transmembrane transporter activity | 3.73E-03 |
| 34 | GO:0005275: amine transmembrane transporter activity | 3.73E-03 |
| 35 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.59E-03 |
| 36 | GO:0031177: phosphopantetheine binding | 4.61E-03 |
| 37 | GO:0000035: acyl binding | 5.57E-03 |
| 38 | GO:0030515: snoRNA binding | 6.58E-03 |
| 39 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 6.58E-03 |
| 40 | GO:0008235: metalloexopeptidase activity | 6.58E-03 |
| 41 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 7.65E-03 |
| 42 | GO:0043022: ribosome binding | 7.65E-03 |
| 43 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 1.39E-02 |
| 44 | GO:0044183: protein binding involved in protein folding | 1.39E-02 |
| 45 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.13E-02 |
| 46 | GO:0005528: FK506 binding | 2.30E-02 |
| 47 | GO:0008514: organic anion transmembrane transporter activity | 3.18E-02 |
| 48 | GO:0008080: N-acetyltransferase activity | 3.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0005840: ribosome | 7.28E-152 |
| 3 | GO:0022626: cytosolic ribosome | 1.77E-143 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 5.00E-129 |
| 5 | GO:0022627: cytosolic small ribosomal subunit | 5.97E-95 |
| 6 | GO:0005737: cytoplasm | 1.86E-45 |
| 7 | GO:0005730: nucleolus | 1.13E-37 |
| 8 | GO:0005829: cytosol | 5.50E-37 |
| 9 | GO:0009506: plasmodesma | 6.19E-28 |
| 10 | GO:0005774: vacuolar membrane | 2.05E-19 |
| 11 | GO:0015934: large ribosomal subunit | 3.96E-19 |
| 12 | GO:0016020: membrane | 1.38E-15 |
| 13 | GO:0005773: vacuole | 1.22E-11 |
| 14 | GO:0015935: small ribosomal subunit | 2.28E-10 |
| 15 | GO:0005742: mitochondrial outer membrane translocase complex | 4.70E-09 |
| 16 | GO:0005618: cell wall | 2.12E-07 |
| 17 | GO:0071011: precatalytic spliceosome | 4.86E-05 |
| 18 | GO:0071013: catalytic step 2 spliceosome | 7.90E-05 |
| 19 | GO:0005886: plasma membrane | 9.50E-05 |
| 20 | GO:0005665: DNA-directed RNA polymerase II, core complex | 9.79E-05 |
| 21 | GO:0019013: viral nucleocapsid | 1.19E-04 |
| 22 | GO:0000502: proteasome complex | 1.25E-04 |
| 23 | GO:0009507: chloroplast | 2.16E-04 |
| 24 | GO:0005741: mitochondrial outer membrane | 3.00E-04 |
| 25 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.02E-04 |
| 26 | GO:0030686: 90S preribosome | 4.26E-04 |
| 27 | GO:0046930: pore complex | 6.20E-04 |
| 28 | GO:0005736: DNA-directed RNA polymerase I complex | 7.43E-04 |
| 29 | GO:0005666: DNA-directed RNA polymerase III complex | 8.75E-04 |
| 30 | GO:0031415: NatA complex | 9.21E-04 |
| 31 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.02E-03 |
| 32 | GO:0034719: SMN-Sm protein complex | 1.50E-03 |
| 33 | GO:0000419: DNA-directed RNA polymerase V complex | 2.14E-03 |
| 34 | GO:0033180: proton-transporting V-type ATPase, V1 domain | 2.17E-03 |
| 35 | GO:1990726: Lsm1-7-Pat1 complex | 2.17E-03 |
| 36 | GO:0005758: mitochondrial intermembrane space | 2.38E-03 |
| 37 | GO:0005839: proteasome core complex | 2.89E-03 |
| 38 | GO:0005682: U5 snRNP | 2.91E-03 |
| 39 | GO:0016471: vacuolar proton-transporting V-type ATPase complex | 2.91E-03 |
| 40 | GO:0005687: U4 snRNP | 3.73E-03 |
| 41 | GO:0097526: spliceosomal tri-snRNP complex | 3.73E-03 |
| 42 | GO:0016282: eukaryotic 43S preinitiation complex | 4.61E-03 |
| 43 | GO:0031428: box C/D snoRNP complex | 4.61E-03 |
| 44 | GO:0000974: Prp19 complex | 4.61E-03 |
| 45 | GO:0005762: mitochondrial large ribosomal subunit | 5.57E-03 |
| 46 | GO:0033290: eukaryotic 48S preinitiation complex | 5.57E-03 |
| 47 | GO:0005689: U12-type spliceosomal complex | 5.57E-03 |
| 48 | GO:0016272: prefoldin complex | 5.57E-03 |
| 49 | GO:0005681: spliceosomal complex | 5.68E-03 |
| 50 | GO:0071004: U2-type prespliceosome | 7.65E-03 |
| 51 | GO:0005688: U6 snRNP | 7.65E-03 |
| 52 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 8.79E-03 |
| 53 | GO:0005685: U1 snRNP | 9.98E-03 |
| 54 | GO:0015030: Cajal body | 1.12E-02 |
| 55 | GO:0005622: intracellular | 1.13E-02 |
| 56 | GO:0005686: U2 snRNP | 1.25E-02 |
| 57 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.39E-02 |
| 58 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.39E-02 |
| 59 | GO:0005743: mitochondrial inner membrane | 1.41E-02 |
| 60 | GO:0031307: integral component of mitochondrial outer membrane | 1.53E-02 |
| 61 | GO:0032040: small-subunit processome | 1.53E-02 |
| 62 | GO:0070469: respiratory chain | 2.47E-02 |
| 63 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 3.18E-02 |
| 64 | GO:0016592: mediator complex | 4.57E-02 |