co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034394: protein localization to cell surface	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0000740: nuclear membrane fusion	0.00E+00
5	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
6	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
7	GO:0006412: translation	1.36E-14
8	GO:0006511: ubiquitin-dependent protein catabolic process	2.06E-08
9	GO:0006820: anion transport	1.56E-05
10	GO:0006457: protein folding	1.86E-05
11	GO:0000027: ribosomal large subunit assembly	4.10E-05
12	GO:0009408: response to heat	9.35E-05
13	GO:0051603: proteolysis involved in cellular protein catabolic process	1.31E-04
14	GO:0042254: ribosome biogenesis	1.83E-04
15	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.91E-04
16	GO:0006407: rRNA export from nucleus	1.91E-04
17	GO:0043687: post-translational protein modification	1.91E-04
18	GO:0010265: SCF complex assembly	1.91E-04
19	GO:0048453: sepal formation	1.91E-04
20	GO:0031060: regulation of histone methylation	1.91E-04
21	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.91E-04
22	GO:0009060: aerobic respiration	2.33E-04
23	GO:0098656: anion transmembrane transport	2.33E-04
24	GO:0009735: response to cytokinin	2.83E-04
25	GO:0051788: response to misfolded protein	4.29E-04
26	GO:0006435: threonyl-tRNA aminoacylation	4.29E-04
27	GO:0015786: UDP-glucose transport	4.29E-04
28	GO:0006432: phenylalanyl-tRNA aminoacylation	4.29E-04
29	GO:1990069: stomatal opening	4.29E-04
30	GO:0001736: establishment of planar polarity	4.29E-04
31	GO:0045041: protein import into mitochondrial intermembrane space	4.29E-04
32	GO:0010198: synergid death	4.29E-04
33	GO:0006626: protein targeting to mitochondrion	4.93E-04
34	GO:0002237: response to molecule of bacterial origin	5.55E-04
35	GO:0034976: response to endoplasmic reticulum stress	6.92E-04
36	GO:0046168: glycerol-3-phosphate catabolic process	6.99E-04
37	GO:1902626: assembly of large subunit precursor of preribosome	6.99E-04
38	GO:0016255: attachment of GPI anchor to protein	6.99E-04
39	GO:0045793: positive regulation of cell size	6.99E-04
40	GO:0015783: GDP-fucose transport	6.99E-04
41	GO:0042256: mature ribosome assembly	6.99E-04
42	GO:0010338: leaf formation	6.99E-04
43	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	6.99E-04
44	GO:0009926: auxin polar transport	7.18E-04
45	GO:0006289: nucleotide-excision repair	7.65E-04
46	GO:0006072: glycerol-3-phosphate metabolic process	9.97E-04
47	GO:0009647: skotomorphogenesis	9.97E-04
48	GO:0006164: purine nucleotide biosynthetic process	9.97E-04
49	GO:0009558: embryo sac cellularization	9.97E-04
50	GO:0001676: long-chain fatty acid metabolic process	9.97E-04
51	GO:0032877: positive regulation of DNA endoreduplication	9.97E-04
52	GO:0051259: protein oligomerization	9.97E-04
53	GO:0051085: chaperone mediated protein folding requiring cofactor	9.97E-04
54	GO:0072334: UDP-galactose transmembrane transport	9.97E-04
55	GO:0006221: pyrimidine nucleotide biosynthetic process	1.32E-03
56	GO:0044205: 'de novo' UMP biosynthetic process	1.32E-03
57	GO:0051781: positive regulation of cell division	1.32E-03
58	GO:0010363: regulation of plant-type hypersensitive response	1.32E-03
59	GO:0000413: protein peptidyl-prolyl isomerization	1.38E-03
60	GO:0015991: ATP hydrolysis coupled proton transport	1.38E-03
61	GO:0036065: fucosylation	1.68E-03
62	GO:0018279: protein N-linked glycosylation via asparagine	1.68E-03
63	GO:0006564: L-serine biosynthetic process	1.68E-03
64	GO:1902183: regulation of shoot apical meristem development	1.68E-03
65	GO:0010375: stomatal complex patterning	1.68E-03
66	GO:0045454: cell redox homeostasis	1.91E-03
67	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.07E-03
68	GO:0006751: glutathione catabolic process	2.07E-03
69	GO:0043248: proteasome assembly	2.07E-03
70	GO:0010358: leaf shaping	2.07E-03
71	GO:0010286: heat acclimation	2.34E-03
72	GO:0042026: protein refolding	2.49E-03
73	GO:0009612: response to mechanical stimulus	2.49E-03
74	GO:0006458: 'de novo' protein folding	2.49E-03
75	GO:0000245: spliceosomal complex assembly	2.49E-03
76	GO:0009955: adaxial/abaxial pattern specification	2.49E-03
77	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.93E-03
78	GO:0006826: iron ion transport	2.93E-03
79	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.93E-03
80	GO:0032880: regulation of protein localization	2.93E-03
81	GO:0048528: post-embryonic root development	2.93E-03
82	GO:0046686: response to cadmium ion	3.39E-03
83	GO:0000028: ribosomal small subunit assembly	3.40E-03
84	GO:0050821: protein stabilization	3.40E-03
85	GO:0031540: regulation of anthocyanin biosynthetic process	3.40E-03
86	GO:0010119: regulation of stomatal movement	3.95E-03
87	GO:0010043: response to zinc ion	3.95E-03
88	GO:0006098: pentose-phosphate shunt	4.40E-03
89	GO:0006754: ATP biosynthetic process	4.40E-03
90	GO:0006189: 'de novo' IMP biosynthetic process	4.40E-03
91	GO:0015780: nucleotide-sugar transport	4.40E-03
92	GO:0009245: lipid A biosynthetic process	4.40E-03
93	GO:0006631: fatty acid metabolic process	5.13E-03
94	GO:0009651: response to salt stress	5.28E-03
95	GO:0045036: protein targeting to chloroplast	5.48E-03
96	GO:0008283: cell proliferation	5.57E-03
97	GO:0006913: nucleocytoplasmic transport	6.06E-03
98	GO:0052544: defense response by callose deposition in cell wall	6.06E-03
99	GO:0072593: reactive oxygen species metabolic process	6.06E-03
100	GO:0016485: protein processing	6.06E-03
101	GO:0048765: root hair cell differentiation	6.06E-03
102	GO:0010015: root morphogenesis	6.06E-03
103	GO:0009965: leaf morphogenesis	6.26E-03
104	GO:0009725: response to hormone	7.28E-03
105	GO:0006094: gluconeogenesis	7.28E-03
106	GO:0009736: cytokinin-activated signaling pathway	7.50E-03
107	GO:0009933: meristem structural organization	7.91E-03
108	GO:0048467: gynoecium development	7.91E-03
109	GO:0048440: carpel development	7.91E-03
110	GO:0009909: regulation of flower development	8.31E-03
111	GO:0010039: response to iron ion	8.57E-03
112	GO:0009969: xyloglucan biosynthetic process	8.57E-03
113	GO:0006096: glycolytic process	8.88E-03
114	GO:0030150: protein import into mitochondrial matrix	9.94E-03
115	GO:0009695: jasmonic acid biosynthetic process	1.07E-02
116	GO:0051726: regulation of cell cycle	1.13E-02
117	GO:0031408: oxylipin biosynthetic process	1.14E-02
118	GO:0015992: proton transport	1.14E-02
119	GO:0061077: chaperone-mediated protein folding	1.14E-02
120	GO:0016226: iron-sulfur cluster assembly	1.21E-02
121	GO:0030433: ubiquitin-dependent ERAD pathway	1.21E-02
122	GO:0007005: mitochondrion organization	1.21E-02
123	GO:0031348: negative regulation of defense response	1.21E-02
124	GO:0080092: regulation of pollen tube growth	1.21E-02
125	GO:0010082: regulation of root meristem growth	1.29E-02
126	GO:0001944: vasculature development	1.29E-02
127	GO:0006012: galactose metabolic process	1.29E-02
128	GO:0010584: pollen exine formation	1.37E-02
129	GO:0048443: stamen development	1.37E-02
130	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.45E-02
131	GO:0010051: xylem and phloem pattern formation	1.53E-02
132	GO:0010305: leaf vascular tissue pattern formation	1.62E-02
133	GO:0010197: polar nucleus fusion	1.62E-02
134	GO:0010182: sugar mediated signaling pathway	1.62E-02
135	GO:0015986: ATP synthesis coupled proton transport	1.70E-02
136	GO:0048825: cotyledon development	1.79E-02
137	GO:0009749: response to glucose	1.79E-02
138	GO:0010193: response to ozone	1.88E-02
139	GO:0009630: gravitropism	1.97E-02
140	GO:0030163: protein catabolic process	2.06E-02
141	GO:0071281: cellular response to iron ion	2.06E-02
142	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.08E-02
143	GO:0009908: flower development	2.20E-02
144	GO:0009617: response to bacterium	2.22E-02
145	GO:0016579: protein deubiquitination	2.34E-02
146	GO:0000910: cytokinesis	2.34E-02
147	GO:0010029: regulation of seed germination	2.54E-02
148	GO:0006974: cellular response to DNA damage stimulus	2.64E-02
149	GO:0009627: systemic acquired resistance	2.64E-02
150	GO:0008219: cell death	2.95E-02
151	GO:0009832: plant-type cell wall biogenesis	3.05E-02
152	GO:0006970: response to osmotic stress	3.09E-02
153	GO:0006499: N-terminal protein myristoylation	3.16E-02
154	GO:0006811: ion transport	3.16E-02
155	GO:0045087: innate immune response	3.49E-02
156	GO:0006839: mitochondrial transport	3.83E-02
157	GO:0008643: carbohydrate transport	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
2	GO:0004151: dihydroorotase activity	0.00E+00
3	GO:0004056: argininosuccinate lyase activity	0.00E+00
4	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
5	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
6	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
7	GO:0003735: structural constituent of ribosome	5.97E-19
8	GO:0004298: threonine-type endopeptidase activity	2.40E-14
9	GO:0008233: peptidase activity	8.63E-13
10	GO:0003729: mRNA binding	1.02E-10
11	GO:0003923: GPI-anchor transamidase activity	1.74E-06
12	GO:0015288: porin activity	2.56E-06
13	GO:0008308: voltage-gated anion channel activity	3.73E-06
14	GO:0008097: 5S rRNA binding	1.47E-05
15	GO:0004576: oligosaccharyl transferase activity	2.72E-05
16	GO:0030544: Hsp70 protein binding	1.91E-04
17	GO:0004321: fatty-acyl-CoA synthase activity	1.91E-04
18	GO:0016817: hydrolase activity, acting on acid anhydrides	1.91E-04
19	GO:0004826: phenylalanine-tRNA ligase activity	4.29E-04
20	GO:0004829: threonine-tRNA ligase activity	4.29E-04
21	GO:0004618: phosphoglycerate kinase activity	4.29E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	4.29E-04
23	GO:0004839: ubiquitin activating enzyme activity	4.29E-04
24	GO:0031072: heat shock protein binding	4.93E-04
25	GO:0019003: GDP binding	6.99E-04
26	GO:0004557: alpha-galactosidase activity	6.99E-04
27	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	6.99E-04
28	GO:0005457: GDP-fucose transmembrane transporter activity	6.99E-04
29	GO:0052692: raffinose alpha-galactosidase activity	6.99E-04
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.71E-04
31	GO:0005460: UDP-glucose transmembrane transporter activity	9.97E-04
32	GO:0003756: protein disulfide isomerase activity	1.18E-03
33	GO:0070628: proteasome binding	1.32E-03
34	GO:0010011: auxin binding	1.32E-03
35	GO:0051082: unfolded protein binding	1.61E-03
36	GO:0004888: transmembrane signaling receptor activity	1.68E-03
37	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.68E-03
38	GO:0004040: amidase activity	1.68E-03
39	GO:0005459: UDP-galactose transmembrane transporter activity	1.68E-03
40	GO:0008641: small protein activating enzyme activity	1.68E-03
41	GO:0031593: polyubiquitin binding	2.07E-03
42	GO:0031177: phosphopantetheine binding	2.07E-03
43	GO:0036402: proteasome-activating ATPase activity	2.07E-03
44	GO:0004332: fructose-bisphosphate aldolase activity	2.07E-03
45	GO:0102391: decanoate--CoA ligase activity	2.49E-03
46	GO:0000035: acyl binding	2.49E-03
47	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.49E-03
48	GO:0004467: long-chain fatty acid-CoA ligase activity	2.93E-03
49	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.93E-03
50	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.93E-03
51	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.40E-03
52	GO:0004034: aldose 1-epimerase activity	3.40E-03
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.42E-03
54	GO:0000989: transcription factor activity, transcription factor binding	4.40E-03
55	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.40E-03
56	GO:0008417: fucosyltransferase activity	4.40E-03
57	GO:0016207: 4-coumarate-CoA ligase activity	4.40E-03
58	GO:0008047: enzyme activator activity	5.48E-03
59	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.06E-03
60	GO:0044183: protein binding involved in protein folding	6.06E-03
61	GO:0000049: tRNA binding	6.66E-03
62	GO:0051287: NAD binding	6.74E-03
63	GO:0015266: protein channel activity	7.28E-03
64	GO:0008266: poly(U) RNA binding	7.91E-03
65	GO:0017025: TBP-class protein binding	8.57E-03
66	GO:0005524: ATP binding	9.14E-03
67	GO:0043130: ubiquitin binding	9.94E-03
68	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.14E-02
69	GO:0019843: rRNA binding	1.34E-02
70	GO:0008514: organic anion transmembrane transporter activity	1.37E-02
71	GO:0005515: protein binding	1.50E-02
72	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.62E-02
73	GO:0016853: isomerase activity	1.70E-02
74	GO:0004872: receptor activity	1.79E-02
75	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.06E-02
76	GO:0003684: damaged DNA binding	2.15E-02
77	GO:0008237: metallopeptidase activity	2.25E-02
78	GO:0016597: amino acid binding	2.34E-02
79	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.64E-02
80	GO:0004683: calmodulin-dependent protein kinase activity	2.74E-02
81	GO:0004222: metalloendopeptidase activity	3.16E-02
82	GO:0050897: cobalt ion binding	3.27E-02
83	GO:0003746: translation elongation factor activity	3.49E-02
84	GO:0003993: acid phosphatase activity	3.60E-02
85	GO:0042393: histone binding	3.83E-02
86	GO:0051537: 2 iron, 2 sulfur cluster binding	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0005675: holo TFIIH complex	0.00E+00
2	GO:0022626: cytosolic ribosome	2.82E-21
3	GO:0005829: cytosol	1.58E-17
4	GO:0000502: proteasome complex	6.33E-17
5	GO:0005839: proteasome core complex	2.40E-14
6	GO:0005774: vacuolar membrane	3.20E-14
7	GO:0005840: ribosome	6.02E-13
8	GO:0022625: cytosolic large ribosomal subunit	1.29E-12
9	GO:0005730: nucleolus	2.68E-09
10	GO:0005773: vacuole	8.84E-09
11	GO:0019773: proteasome core complex, alpha-subunit complex	3.20E-08
12	GO:0022627: cytosolic small ribosomal subunit	4.60E-08
13	GO:0005737: cytoplasm	5.41E-07
14	GO:0009506: plasmodesma	9.29E-07
15	GO:0005741: mitochondrial outer membrane	1.49E-06
16	GO:0046930: pore complex	3.73E-06
17	GO:0005783: endoplasmic reticulum	4.86E-05
18	GO:0016020: membrane	5.57E-05
19	GO:0030686: 90S preribosome	1.91E-04
20	GO:0005618: cell wall	2.91E-04
21	GO:0048471: perinuclear region of cytoplasm	3.78E-04
22	GO:0015934: large ribosomal subunit	4.64E-04
23	GO:0009507: chloroplast	6.16E-04
24	GO:0042765: GPI-anchor transamidase complex	6.99E-04
25	GO:0000439: core TFIIH complex	6.99E-04
26	GO:0046861: glyoxysomal membrane	6.99E-04
27	GO:0005758: mitochondrial intermembrane space	7.65E-04
28	GO:0009331: glycerol-3-phosphate dehydrogenase complex	9.97E-04
29	GO:0005886: plasma membrane	1.07E-03
30	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.32E-03
31	GO:0008250: oligosaccharyltransferase complex	1.68E-03
32	GO:0005743: mitochondrial inner membrane	2.35E-03
33	GO:0031597: cytosolic proteasome complex	2.49E-03
34	GO:0005788: endoplasmic reticulum lumen	2.78E-03
35	GO:0031595: nuclear proteasome complex	2.93E-03
36	GO:0005742: mitochondrial outer membrane translocase complex	3.88E-03
37	GO:0009514: glyoxysome	3.88E-03
38	GO:0008540: proteasome regulatory particle, base subcomplex	4.93E-03
39	GO:0008541: proteasome regulatory particle, lid subcomplex	6.06E-03
40	GO:0009536: plastid	7.38E-03
41	GO:0005777: peroxisome	7.73E-03
42	GO:0005750: mitochondrial respiratory chain complex III	7.91E-03
43	GO:0005753: mitochondrial proton-transporting ATP synthase complex	8.57E-03
44	GO:0005739: mitochondrion	9.29E-03
45	GO:0070469: respiratory chain	1.07E-02
46	GO:0015935: small ribosomal subunit	1.14E-02
47	GO:0005759: mitochondrial matrix	1.69E-02
48	GO:0032580: Golgi cisterna membrane	2.15E-02
49	GO:0009570: chloroplast stroma	2.18E-02
50	GO:0009941: chloroplast envelope	2.85E-02
51	GO:0009707: chloroplast outer membrane	2.95E-02
52	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.15E-02
53	GO:0000325: plant-type vacuole	3.27E-02
54	GO:0000786: nucleosome	3.38E-02
55	GO:0005819: spindle	3.71E-02