GO Enrichment Analysis of Co-expressed Genes with
AT3G28070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009249: protein lipoylation | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0009304: tRNA transcription | 0.00E+00 |
| 4 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 5 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 6 | GO:0010336: gibberellic acid homeostasis | 0.00E+00 |
| 7 | GO:0010423: negative regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 8 | GO:0046460: neutral lipid biosynthetic process | 0.00E+00 |
| 9 | GO:0018316: peptide cross-linking via L-cystine | 0.00E+00 |
| 10 | GO:0009946: proximal/distal axis specification | 0.00E+00 |
| 11 | GO:0034970: histone H3-R2 methylation | 2.25E-04 |
| 12 | GO:0010362: negative regulation of anion channel activity by blue light | 2.25E-04 |
| 13 | GO:0034972: histone H3-R26 methylation | 2.25E-04 |
| 14 | GO:0034971: histone H3-R17 methylation | 2.25E-04 |
| 15 | GO:0042371: vitamin K biosynthetic process | 2.25E-04 |
| 16 | GO:0071454: cellular response to anoxia | 2.25E-04 |
| 17 | GO:0071461: cellular response to redox state | 2.25E-04 |
| 18 | GO:0009658: chloroplast organization | 2.78E-04 |
| 19 | GO:0009098: leucine biosynthetic process | 3.51E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.00E-04 |
| 21 | GO:0080005: photosystem stoichiometry adjustment | 5.00E-04 |
| 22 | GO:0007154: cell communication | 5.00E-04 |
| 23 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 5.00E-04 |
| 24 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 5.00E-04 |
| 25 | GO:0080153: negative regulation of reductive pentose-phosphate cycle | 5.00E-04 |
| 26 | GO:0009767: photosynthetic electron transport chain | 6.19E-04 |
| 27 | GO:0010207: photosystem II assembly | 6.96E-04 |
| 28 | GO:0010338: leaf formation | 8.13E-04 |
| 29 | GO:0009150: purine ribonucleotide metabolic process | 8.13E-04 |
| 30 | GO:0071492: cellular response to UV-A | 8.13E-04 |
| 31 | GO:0071836: nectar secretion | 8.13E-04 |
| 32 | GO:0006696: ergosterol biosynthetic process | 8.13E-04 |
| 33 | GO:0044375: regulation of peroxisome size | 8.13E-04 |
| 34 | GO:0006071: glycerol metabolic process | 8.64E-04 |
| 35 | GO:0009744: response to sucrose | 9.59E-04 |
| 36 | GO:0007017: microtubule-based process | 1.05E-03 |
| 37 | GO:0046653: tetrahydrofolate metabolic process | 1.16E-03 |
| 38 | GO:0090307: mitotic spindle assembly | 1.16E-03 |
| 39 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 1.16E-03 |
| 40 | GO:0033014: tetrapyrrole biosynthetic process | 1.16E-03 |
| 41 | GO:2001141: regulation of RNA biosynthetic process | 1.16E-03 |
| 42 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.16E-03 |
| 43 | GO:0010371: regulation of gibberellin biosynthetic process | 1.16E-03 |
| 44 | GO:0071486: cellular response to high light intensity | 1.54E-03 |
| 45 | GO:0009765: photosynthesis, light harvesting | 1.54E-03 |
| 46 | GO:0045088: regulation of innate immune response | 1.54E-03 |
| 47 | GO:0031122: cytoplasmic microtubule organization | 1.54E-03 |
| 48 | GO:0009902: chloroplast relocation | 1.54E-03 |
| 49 | GO:0010197: polar nucleus fusion | 1.87E-03 |
| 50 | GO:0016123: xanthophyll biosynthetic process | 1.97E-03 |
| 51 | GO:0009616: virus induced gene silencing | 1.97E-03 |
| 52 | GO:0009107: lipoate biosynthetic process | 1.97E-03 |
| 53 | GO:0006555: methionine metabolic process | 2.43E-03 |
| 54 | GO:0035194: posttranscriptional gene silencing by RNA | 2.43E-03 |
| 55 | GO:0000741: karyogamy | 2.43E-03 |
| 56 | GO:0010190: cytochrome b6f complex assembly | 2.43E-03 |
| 57 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.43E-03 |
| 58 | GO:0007264: small GTPase mediated signal transduction | 2.45E-03 |
| 59 | GO:0019761: glucosinolate biosynthetic process | 2.45E-03 |
| 60 | GO:0019509: L-methionine salvage from methylthioadenosine | 2.91E-03 |
| 61 | GO:0034389: lipid particle organization | 2.91E-03 |
| 62 | GO:0010019: chloroplast-nucleus signaling pathway | 2.91E-03 |
| 63 | GO:1900056: negative regulation of leaf senescence | 3.43E-03 |
| 64 | GO:0009396: folic acid-containing compound biosynthetic process | 3.43E-03 |
| 65 | GO:0010038: response to metal ion | 3.43E-03 |
| 66 | GO:0016559: peroxisome fission | 3.98E-03 |
| 67 | GO:0048564: photosystem I assembly | 3.98E-03 |
| 68 | GO:0010928: regulation of auxin mediated signaling pathway | 3.98E-03 |
| 69 | GO:0009704: de-etiolation | 3.98E-03 |
| 70 | GO:0071482: cellular response to light stimulus | 4.56E-03 |
| 71 | GO:0022900: electron transport chain | 4.56E-03 |
| 72 | GO:0044030: regulation of DNA methylation | 4.56E-03 |
| 73 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.60E-03 |
| 74 | GO:0006811: ion transport | 4.75E-03 |
| 75 | GO:0007568: aging | 4.98E-03 |
| 76 | GO:0019432: triglyceride biosynthetic process | 5.16E-03 |
| 77 | GO:0009821: alkaloid biosynthetic process | 5.16E-03 |
| 78 | GO:0046916: cellular transition metal ion homeostasis | 5.16E-03 |
| 79 | GO:0006783: heme biosynthetic process | 5.16E-03 |
| 80 | GO:0015780: nucleotide-sugar transport | 5.16E-03 |
| 81 | GO:0009638: phototropism | 5.79E-03 |
| 82 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.79E-03 |
| 83 | GO:0035999: tetrahydrofolate interconversion | 5.79E-03 |
| 84 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.79E-03 |
| 85 | GO:0008356: asymmetric cell division | 5.79E-03 |
| 86 | GO:0051555: flavonol biosynthetic process | 6.45E-03 |
| 87 | GO:0045036: protein targeting to chloroplast | 6.45E-03 |
| 88 | GO:0008285: negative regulation of cell proliferation | 7.13E-03 |
| 89 | GO:0043085: positive regulation of catalytic activity | 7.13E-03 |
| 90 | GO:0006352: DNA-templated transcription, initiation | 7.13E-03 |
| 91 | GO:0006790: sulfur compound metabolic process | 7.84E-03 |
| 92 | GO:0005986: sucrose biosynthetic process | 8.57E-03 |
| 93 | GO:0009725: response to hormone | 8.57E-03 |
| 94 | GO:0034605: cellular response to heat | 9.33E-03 |
| 95 | GO:0019253: reductive pentose-phosphate cycle | 9.33E-03 |
| 96 | GO:0007031: peroxisome organization | 1.01E-02 |
| 97 | GO:0000162: tryptophan biosynthetic process | 1.09E-02 |
| 98 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.17E-02 |
| 99 | GO:0006289: nucleotide-excision repair | 1.17E-02 |
| 100 | GO:0010073: meristem maintenance | 1.26E-02 |
| 101 | GO:0006730: one-carbon metabolic process | 1.43E-02 |
| 102 | GO:0016226: iron-sulfur cluster assembly | 1.43E-02 |
| 103 | GO:0080092: regulation of pollen tube growth | 1.43E-02 |
| 104 | GO:0006810: transport | 1.52E-02 |
| 105 | GO:0010227: floral organ abscission | 1.53E-02 |
| 106 | GO:0016117: carotenoid biosynthetic process | 1.71E-02 |
| 107 | GO:0070417: cellular response to cold | 1.71E-02 |
| 108 | GO:0010118: stomatal movement | 1.81E-02 |
| 109 | GO:0055114: oxidation-reduction process | 1.82E-02 |
| 110 | GO:0009958: positive gravitropism | 1.91E-02 |
| 111 | GO:0009791: post-embryonic development | 2.11E-02 |
| 112 | GO:0009851: auxin biosynthetic process | 2.11E-02 |
| 113 | GO:0030163: protein catabolic process | 2.43E-02 |
| 114 | GO:0071805: potassium ion transmembrane transport | 2.65E-02 |
| 115 | GO:0016126: sterol biosynthetic process | 2.88E-02 |
| 116 | GO:0009615: response to virus | 2.88E-02 |
| 117 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 3.00E-02 |
| 118 | GO:0009816: defense response to bacterium, incompatible interaction | 3.00E-02 |
| 119 | GO:0042128: nitrate assimilation | 3.12E-02 |
| 120 | GO:0015995: chlorophyll biosynthetic process | 3.24E-02 |
| 121 | GO:0018298: protein-chromophore linkage | 3.48E-02 |
| 122 | GO:0000160: phosphorelay signal transduction system | 3.61E-02 |
| 123 | GO:0009910: negative regulation of flower development | 3.86E-02 |
| 124 | GO:0010043: response to zinc ion | 3.86E-02 |
| 125 | GO:0009853: photorespiration | 4.12E-02 |
| 126 | GO:0009637: response to blue light | 4.12E-02 |
| 127 | GO:0030001: metal ion transport | 4.52E-02 |
| 128 | GO:0046686: response to cadmium ion | 4.90E-02 |
| 129 | GO:0009640: photomorphogenesis | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 2 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 3 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 4 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 5 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0004848: ureidoglycolate hydrolase activity | 8.63E-06 |
| 8 | GO:0048038: quinone binding | 2.23E-04 |
| 9 | GO:0046906: tetrapyrrole binding | 2.25E-04 |
| 10 | GO:0033984: indole-3-glycerol-phosphate lyase activity | 2.25E-04 |
| 11 | GO:0004325: ferrochelatase activity | 2.25E-04 |
| 12 | GO:0051996: squalene synthase activity | 2.25E-04 |
| 13 | GO:0016783: sulfurtransferase activity | 2.25E-04 |
| 14 | GO:0030941: chloroplast targeting sequence binding | 2.25E-04 |
| 15 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 2.25E-04 |
| 16 | GO:0016491: oxidoreductase activity | 3.28E-04 |
| 17 | GO:0016415: octanoyltransferase activity | 5.00E-04 |
| 18 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 5.00E-04 |
| 19 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 5.00E-04 |
| 20 | GO:0004046: aminoacylase activity | 5.00E-04 |
| 21 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 5.00E-04 |
| 22 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 5.00E-04 |
| 23 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 5.00E-04 |
| 24 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 5.00E-04 |
| 25 | GO:0017118: lipoyltransferase activity | 5.00E-04 |
| 26 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 5.00E-04 |
| 27 | GO:0008430: selenium binding | 8.13E-04 |
| 28 | GO:0004180: carboxypeptidase activity | 8.13E-04 |
| 29 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 8.13E-04 |
| 30 | GO:0046524: sucrose-phosphate synthase activity | 8.13E-04 |
| 31 | GO:0032947: protein complex scaffold | 8.13E-04 |
| 32 | GO:0019003: GDP binding | 8.13E-04 |
| 33 | GO:0003861: 3-isopropylmalate dehydratase activity | 8.13E-04 |
| 34 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 8.13E-04 |
| 35 | GO:0008469: histone-arginine N-methyltransferase activity | 8.13E-04 |
| 36 | GO:0000254: C-4 methylsterol oxidase activity | 1.16E-03 |
| 37 | GO:0016851: magnesium chelatase activity | 1.16E-03 |
| 38 | GO:0004792: thiosulfate sulfurtransferase activity | 1.16E-03 |
| 39 | GO:0009882: blue light photoreceptor activity | 1.16E-03 |
| 40 | GO:0047627: adenylylsulfatase activity | 1.16E-03 |
| 41 | GO:0016836: hydro-lyase activity | 1.54E-03 |
| 42 | GO:0051861: glycolipid binding | 1.54E-03 |
| 43 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.54E-03 |
| 44 | GO:0016987: sigma factor activity | 1.54E-03 |
| 45 | GO:0043015: gamma-tubulin binding | 1.54E-03 |
| 46 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.54E-03 |
| 47 | GO:0001053: plastid sigma factor activity | 1.54E-03 |
| 48 | GO:0004834: tryptophan synthase activity | 1.54E-03 |
| 49 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.79E-03 |
| 50 | GO:0051011: microtubule minus-end binding | 1.97E-03 |
| 51 | GO:0022857: transmembrane transporter activity | 2.01E-03 |
| 52 | GO:0015271: outward rectifier potassium channel activity | 2.43E-03 |
| 53 | GO:0000293: ferric-chelate reductase activity | 2.43E-03 |
| 54 | GO:0004518: nuclease activity | 2.45E-03 |
| 55 | GO:0015631: tubulin binding | 2.91E-03 |
| 56 | GO:0004144: diacylglycerol O-acyltransferase activity | 2.91E-03 |
| 57 | GO:0016157: sucrose synthase activity | 2.91E-03 |
| 58 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 3.43E-03 |
| 59 | GO:0019899: enzyme binding | 3.43E-03 |
| 60 | GO:0003724: RNA helicase activity | 4.56E-03 |
| 61 | GO:0005267: potassium channel activity | 4.56E-03 |
| 62 | GO:0046914: transition metal ion binding | 4.56E-03 |
| 63 | GO:0008194: UDP-glycosyltransferase activity | 5.01E-03 |
| 64 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 5.16E-03 |
| 65 | GO:0071949: FAD binding | 5.16E-03 |
| 66 | GO:0016844: strictosidine synthase activity | 5.79E-03 |
| 67 | GO:0047372: acylglycerol lipase activity | 7.13E-03 |
| 68 | GO:0004860: protein kinase inhibitor activity | 7.13E-03 |
| 69 | GO:0004129: cytochrome-c oxidase activity | 7.13E-03 |
| 70 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 7.13E-03 |
| 71 | GO:0001054: RNA polymerase I activity | 7.13E-03 |
| 72 | GO:0001056: RNA polymerase III activity | 7.84E-03 |
| 73 | GO:0031072: heat shock protein binding | 8.57E-03 |
| 74 | GO:0000155: phosphorelay sensor kinase activity | 8.57E-03 |
| 75 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.33E-03 |
| 76 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 9.50E-03 |
| 77 | GO:0003777: microtubule motor activity | 1.05E-02 |
| 78 | GO:0003887: DNA-directed DNA polymerase activity | 1.09E-02 |
| 79 | GO:0051536: iron-sulfur cluster binding | 1.17E-02 |
| 80 | GO:0004176: ATP-dependent peptidase activity | 1.34E-02 |
| 81 | GO:0008080: N-acetyltransferase activity | 1.91E-02 |
| 82 | GO:0010181: FMN binding | 2.01E-02 |
| 83 | GO:0004872: receptor activity | 2.11E-02 |
| 84 | GO:0005506: iron ion binding | 2.52E-02 |
| 85 | GO:0008483: transaminase activity | 2.65E-02 |
| 86 | GO:0008237: metallopeptidase activity | 2.65E-02 |
| 87 | GO:0005200: structural constituent of cytoskeleton | 2.65E-02 |
| 88 | GO:0016597: amino acid binding | 2.77E-02 |
| 89 | GO:0042802: identical protein binding | 2.99E-02 |
| 90 | GO:0016168: chlorophyll binding | 3.00E-02 |
| 91 | GO:0030247: polysaccharide binding | 3.24E-02 |
| 92 | GO:0008236: serine-type peptidase activity | 3.36E-02 |
| 93 | GO:0008168: methyltransferase activity | 3.50E-02 |
| 94 | GO:0046982: protein heterodimerization activity | 3.56E-02 |
| 95 | GO:0016788: hydrolase activity, acting on ester bonds | 3.70E-02 |
| 96 | GO:0004222: metalloendopeptidase activity | 3.73E-02 |
| 97 | GO:0016740: transferase activity | 4.28E-02 |
| 98 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.52E-02 |
| 99 | GO:0004364: glutathione transferase activity | 4.79E-02 |
| 100 | GO:0004185: serine-type carboxypeptidase activity | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030427: site of polarized growth | 0.00E+00 |
| 2 | GO:0097708: intracellular vesicle | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.44E-18 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 8.10E-09 |
| 5 | GO:0030286: dynein complex | 3.60E-05 |
| 6 | GO:0031972: chloroplast intermembrane space | 2.25E-04 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.95E-04 |
| 8 | GO:0031969: chloroplast membrane | 4.16E-04 |
| 9 | GO:0008274: gamma-tubulin ring complex | 5.00E-04 |
| 10 | GO:0005875: microtubule associated complex | 8.64E-04 |
| 11 | GO:0000923: equatorial microtubule organizing center | 1.16E-03 |
| 12 | GO:0055035: plastid thylakoid membrane | 1.97E-03 |
| 13 | GO:0000793: condensed chromosome | 2.43E-03 |
| 14 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.91E-03 |
| 15 | GO:0031359: integral component of chloroplast outer membrane | 3.43E-03 |
| 16 | GO:0005779: integral component of peroxisomal membrane | 4.56E-03 |
| 17 | GO:0005811: lipid particle | 4.56E-03 |
| 18 | GO:0046930: pore complex | 4.56E-03 |
| 19 | GO:0005736: DNA-directed RNA polymerase I complex | 5.16E-03 |
| 20 | GO:0000922: spindle pole | 5.16E-03 |
| 21 | GO:0005666: DNA-directed RNA polymerase III complex | 5.79E-03 |
| 22 | GO:0009570: chloroplast stroma | 6.06E-03 |
| 23 | GO:0016324: apical plasma membrane | 6.45E-03 |
| 24 | GO:0043234: protein complex | 1.09E-02 |
| 25 | GO:0005777: peroxisome | 1.10E-02 |
| 26 | GO:0009536: plastid | 1.11E-02 |
| 27 | GO:0015935: small ribosomal subunit | 1.34E-02 |
| 28 | GO:0010287: plastoglobule | 1.61E-02 |
| 29 | GO:0009523: photosystem II | 2.11E-02 |
| 30 | GO:0010319: stromule | 2.65E-02 |
| 31 | GO:0005778: peroxisomal membrane | 2.65E-02 |
| 32 | GO:0009707: chloroplast outer membrane | 3.48E-02 |
| 33 | GO:0009534: chloroplast thylakoid | 4.23E-02 |
| 34 | GO:0005819: spindle | 4.39E-02 |