co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0022900: electron transport chain	4.22E-05
6	GO:0034971: histone H3-R17 methylation	7.07E-05
7	GO:0034970: histone H3-R2 methylation	7.07E-05
8	GO:0034972: histone H3-R26 methylation	7.07E-05
9	GO:1902265: abscisic acid homeostasis	7.07E-05
10	GO:0050826: response to freezing	1.23E-04
11	GO:0007154: cell communication	1.70E-04
12	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.70E-04
13	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	1.70E-04
14	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	1.70E-04
15	GO:0010343: singlet oxygen-mediated programmed cell death	1.70E-04
16	GO:0048255: mRNA stabilization	1.70E-04
17	GO:0071492: cellular response to UV-A	2.86E-04
18	GO:0044375: regulation of peroxisome size	2.86E-04
19	GO:0031022: nuclear migration along microfilament	2.86E-04
20	GO:1902290: positive regulation of defense response to oomycetes	4.15E-04
21	GO:0009113: purine nucleobase biosynthetic process	4.15E-04
22	GO:0009902: chloroplast relocation	5.53E-04
23	GO:0071486: cellular response to high light intensity	5.53E-04
24	GO:0009765: photosynthesis, light harvesting	5.53E-04
25	GO:0000304: response to singlet oxygen	7.00E-04
26	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.57E-04
27	GO:0051568: histone H3-K4 methylation	8.57E-04
28	GO:0006796: phosphate-containing compound metabolic process	8.57E-04
29	GO:0042793: transcription from plastid promoter	8.57E-04
30	GO:0009903: chloroplast avoidance movement	1.02E-03
31	GO:0010019: chloroplast-nucleus signaling pathway	1.02E-03
32	GO:0034389: lipid particle organization	1.02E-03
33	GO:0071446: cellular response to salicylic acid stimulus	1.19E-03
34	GO:0009396: folic acid-containing compound biosynthetic process	1.19E-03
35	GO:0016559: peroxisome fission	1.37E-03
36	GO:0007155: cell adhesion	1.37E-03
37	GO:0010928: regulation of auxin mediated signaling pathway	1.37E-03
38	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.37E-03
39	GO:0042255: ribosome assembly	1.37E-03
40	GO:1900150: regulation of defense response to fungus	1.37E-03
41	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.38E-03
42	GO:0010100: negative regulation of photomorphogenesis	1.56E-03
43	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.56E-03
44	GO:0015780: nucleotide-sugar transport	1.76E-03
45	GO:0019432: triglyceride biosynthetic process	1.76E-03
46	GO:1900426: positive regulation of defense response to bacterium	1.97E-03
47	GO:0035999: tetrahydrofolate interconversion	1.97E-03
48	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.97E-03
49	GO:0010192: mucilage biosynthetic process	2.19E-03
50	GO:0043085: positive regulation of catalytic activity	2.41E-03
51	GO:0030048: actin filament-based movement	2.88E-03
52	GO:0007031: peroxisome organization	3.37E-03
53	GO:0009825: multidimensional cell growth	3.37E-03
54	GO:0080188: RNA-directed DNA methylation	3.37E-03
55	GO:0006071: glycerol metabolic process	3.63E-03
56	GO:0016575: histone deacetylation	4.17E-03
57	GO:0006874: cellular calcium ion homeostasis	4.17E-03
58	GO:0019915: lipid storage	4.44E-03
59	GO:0006306: DNA methylation	4.44E-03
60	GO:0009416: response to light stimulus	4.46E-03
61	GO:0009451: RNA modification	4.87E-03
62	GO:0009958: positive gravitropism	6.24E-03
63	GO:0032502: developmental process	7.56E-03
64	GO:0007264: small GTPase mediated signal transduction	7.56E-03
65	GO:0031047: gene silencing by RNA	7.56E-03
66	GO:1901657: glycosyl compound metabolic process	7.90E-03
67	GO:0006970: response to osmotic stress	7.93E-03
68	GO:0009615: response to virus	9.34E-03
69	GO:0016126: sterol biosynthetic process	9.34E-03
70	GO:0010029: regulation of seed germination	9.71E-03
71	GO:0009816: defense response to bacterium, incompatible interaction	9.71E-03
72	GO:0015995: chlorophyll biosynthetic process	1.05E-02
73	GO:0008219: cell death	1.13E-02
74	GO:0030244: cellulose biosynthetic process	1.13E-02
75	GO:0000160: phosphorelay signal transduction system	1.17E-02
76	GO:0009637: response to blue light	1.33E-02
77	GO:0006839: mitochondrial transport	1.46E-02
78	GO:0008152: metabolic process	1.49E-02
79	GO:0008643: carbohydrate transport	1.68E-02
80	GO:0009664: plant-type cell wall organization	1.87E-02
81	GO:0009736: cytokinin-activated signaling pathway	1.97E-02
82	GO:0009585: red, far-red light phototransduction	1.97E-02
83	GO:0051603: proteolysis involved in cellular protein catabolic process	2.01E-02
84	GO:0009909: regulation of flower development	2.11E-02
85	GO:0009738: abscisic acid-activated signaling pathway	2.32E-02
86	GO:0009742: brassinosteroid mediated signaling pathway	2.63E-02
87	GO:0007623: circadian rhythm	3.73E-02
88	GO:0010228: vegetative to reproductive phase transition of meristem	3.85E-02
89	GO:0008380: RNA splicing	4.23E-02
90	GO:0009617: response to bacterium	4.23E-02
91	GO:0016567: protein ubiquitination	4.39E-02
92	GO:0006468: protein phosphorylation	4.89E-02
93	GO:0009826: unidimensional cell growth	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0046480: galactolipid galactosyltransferase activity	7.07E-05
4	GO:0046906: tetrapyrrole binding	7.07E-05
5	GO:0080079: cellobiose glucosidase activity	7.07E-05
6	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	1.70E-04
7	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	1.70E-04
8	GO:0080045: quercetin 3'-O-glucosyltransferase activity	1.70E-04
9	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	1.70E-04
10	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.70E-04
11	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	1.70E-04
12	GO:0035241: protein-arginine omega-N monomethyltransferase activity	1.70E-04
13	GO:0004329: formate-tetrahydrofolate ligase activity	1.70E-04
14	GO:0008469: histone-arginine N-methyltransferase activity	2.86E-04
15	GO:0004848: ureidoglycolate hydrolase activity	2.86E-04
16	GO:0019003: GDP binding	2.86E-04
17	GO:0000254: C-4 methylsterol oxidase activity	4.15E-04
18	GO:0030247: polysaccharide binding	8.34E-04
19	GO:0080046: quercetin 4'-O-glucosyltransferase activity	8.57E-04
20	GO:0004144: diacylglycerol O-acyltransferase activity	1.02E-03
21	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.19E-03
22	GO:0004427: inorganic diphosphatase activity	1.19E-03
23	GO:0019899: enzyme binding	1.19E-03
24	GO:0051537: 2 iron, 2 sulfur cluster binding	1.58E-03
25	GO:0004860: protein kinase inhibitor activity	2.41E-03
26	GO:0008378: galactosyltransferase activity	2.64E-03
27	GO:0008131: primary amine oxidase activity	3.12E-03
28	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.12E-03
29	GO:0004970: ionotropic glutamate receptor activity	3.37E-03
30	GO:0005217: intracellular ligand-gated ion channel activity	3.37E-03
31	GO:0004176: ATP-dependent peptidase activity	4.44E-03
32	GO:0003727: single-stranded RNA binding	5.32E-03
33	GO:0008194: UDP-glycosyltransferase activity	5.33E-03
34	GO:0008168: methyltransferase activity	7.09E-03
35	GO:0046982: protein heterodimerization activity	7.22E-03
36	GO:0004518: nuclease activity	7.56E-03
37	GO:0000156: phosphorelay response regulator activity	7.90E-03
38	GO:0008237: metallopeptidase activity	8.61E-03
39	GO:0016168: chlorophyll binding	9.71E-03
40	GO:0042803: protein homodimerization activity	1.15E-02
41	GO:0004222: metalloendopeptidase activity	1.21E-02
42	GO:0008422: beta-glucosidase activity	1.41E-02
43	GO:0009055: electron carrier activity	1.45E-02
44	GO:0004519: endonuclease activity	1.47E-02
45	GO:0016757: transferase activity, transferring glycosyl groups	1.47E-02
46	GO:0004185: serine-type carboxypeptidase activity	1.59E-02
47	GO:0004672: protein kinase activity	1.78E-02
48	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.37E-02
49	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.37E-02
50	GO:0022857: transmembrane transporter activity	2.42E-02
51	GO:0008026: ATP-dependent helicase activity	2.63E-02
52	GO:0019843: rRNA binding	2.96E-02
53	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.02E-02
54	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.17E-02
55	GO:0015297: antiporter activity	3.61E-02
56	GO:0005516: calmodulin binding	3.61E-02
57	GO:0042802: identical protein binding	4.42E-02
58	GO:0005506: iron ion binding	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	1.75E-04
3	GO:0009897: external side of plasma membrane	2.86E-04
4	GO:0031359: integral component of chloroplast outer membrane	1.19E-03
5	GO:0005811: lipid particle	1.56E-03
6	GO:0005779: integral component of peroxisomal membrane	1.56E-03
7	GO:0009508: plastid chromosome	2.88E-03
8	GO:0030176: integral component of endoplasmic reticulum membrane	3.37E-03
9	GO:0000419: DNA-directed RNA polymerase V complex	3.63E-03
10	GO:0042651: thylakoid membrane	4.17E-03
11	GO:0015935: small ribosomal subunit	4.44E-03
12	GO:0046658: anchored component of plasma membrane	6.30E-03
13	GO:0009523: photosystem II	6.89E-03
14	GO:0009535: chloroplast thylakoid membrane	7.80E-03
15	GO:0005778: peroxisomal membrane	8.61E-03
16	GO:0009295: nucleoid	8.61E-03
17	GO:0019005: SCF ubiquitin ligase complex	1.13E-02
18	GO:0009707: chloroplast outer membrane	1.13E-02
19	GO:0005743: mitochondrial inner membrane	1.26E-02
20	GO:0005886: plasma membrane	1.38E-02
21	GO:0009536: plastid	1.41E-02
22	GO:0005819: spindle	1.41E-02
23	GO:0005623: cell	3.02E-02
24	GO:0031225: anchored component of membrane	3.74E-02
25	GO:0005802: trans-Golgi network	3.84E-02
26	GO:0009506: plasmodesma	4.07E-02
27	GO:0005768: endosome	4.36E-02