Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G27890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0001881: receptor recycling0.00E+00
2GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
3GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
4GO:0046487: glyoxylate metabolic process0.00E+00
5GO:0030149: sphingolipid catabolic process0.00E+00
6GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
7GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
8GO:0006412: translation1.47E-18
9GO:0006511: ubiquitin-dependent protein catabolic process3.57E-11
10GO:0042254: ribosome biogenesis3.64E-06
11GO:0051603: proteolysis involved in cellular protein catabolic process1.69E-05
12GO:0000027: ribosomal large subunit assembly6.01E-05
13GO:0009735: response to cytokinin9.42E-05
14GO:0009554: megasporogenesis1.19E-04
15GO:0046686: response to cadmium ion1.36E-04
16GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline2.00E-04
17GO:0032365: intracellular lipid transport2.27E-04
18GO:0019222: regulation of metabolic process5.05E-04
19GO:0051788: response to misfolded protein5.05E-04
20GO:0015786: UDP-glucose transport5.05E-04
21GO:0019752: carboxylic acid metabolic process5.05E-04
22GO:0006820: anion transport5.53E-04
23GO:0045454: cell redox homeostasis5.91E-04
24GO:0006626: protein targeting to mitochondrion6.27E-04
25GO:0010043: response to zinc ion6.34E-04
26GO:0015783: GDP-fucose transport8.21E-04
27GO:0046168: glycerol-3-phosphate catabolic process8.21E-04
28GO:0008333: endosome to lysosome transport8.21E-04
29GO:1902626: assembly of large subunit precursor of preribosome8.21E-04
30GO:0055074: calcium ion homeostasis8.21E-04
31GO:0002181: cytoplasmic translation8.21E-04
32GO:0045793: positive regulation of cell size8.21E-04
33GO:0034976: response to endoplasmic reticulum stress8.76E-04
34GO:0009651: response to salt stress1.13E-03
35GO:0051259: protein oligomerization1.17E-03
36GO:0006166: purine ribonucleoside salvage1.17E-03
37GO:0070301: cellular response to hydrogen peroxide1.17E-03
38GO:0006241: CTP biosynthetic process1.17E-03
39GO:0072334: UDP-galactose transmembrane transport1.17E-03
40GO:0006072: glycerol-3-phosphate metabolic process1.17E-03
41GO:0009647: skotomorphogenesis1.17E-03
42GO:0006165: nucleoside diphosphate phosphorylation1.17E-03
43GO:0006228: UTP biosynthetic process1.17E-03
44GO:0006168: adenine salvage1.17E-03
45GO:0001676: long-chain fatty acid metabolic process1.17E-03
46GO:0046513: ceramide biosynthetic process1.17E-03
47GO:0032877: positive regulation of DNA endoreduplication1.17E-03
48GO:0046836: glycolipid transport1.17E-03
49GO:0051781: positive regulation of cell division1.56E-03
50GO:0051365: cellular response to potassium ion starvation1.56E-03
51GO:0006183: GTP biosynthetic process1.56E-03
52GO:0010363: regulation of plant-type hypersensitive response1.56E-03
53GO:1902183: regulation of shoot apical meristem development1.99E-03
54GO:0044209: AMP salvage1.99E-03
55GO:0071493: cellular response to UV-B1.99E-03
56GO:0036065: fucosylation1.99E-03
57GO:0006564: L-serine biosynthetic process1.99E-03
58GO:0043248: proteasome assembly2.45E-03
59GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.45E-03
60GO:0030163: protein catabolic process2.65E-03
61GO:0009648: photoperiodism2.94E-03
62GO:0009955: adaxial/abaxial pattern specification2.94E-03
63GO:1901001: negative regulation of response to salt stress2.94E-03
64GO:0009612: response to mechanical stimulus2.94E-03
65GO:0032880: regulation of protein localization3.47E-03
66GO:0042744: hydrogen peroxide catabolic process3.47E-03
67GO:0048528: post-embryonic root development3.47E-03
68GO:0071446: cellular response to salicylic acid stimulus3.47E-03
69GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c3.47E-03
70GO:0006457: protein folding3.67E-03
71GO:0009627: systemic acquired resistance3.75E-03
72GO:0006102: isocitrate metabolic process4.02E-03
73GO:0009690: cytokinin metabolic process4.02E-03
74GO:0031540: regulation of anthocyanin biosynthetic process4.02E-03
75GO:0009793: embryo development ending in seed dormancy4.08E-03
76GO:0055114: oxidation-reduction process4.68E-03
77GO:0015780: nucleotide-sugar transport5.22E-03
78GO:0098656: anion transmembrane transport5.22E-03
79GO:0046685: response to arsenic-containing substance5.22E-03
80GO:0009245: lipid A biosynthetic process5.22E-03
81GO:0043067: regulation of programmed cell death5.85E-03
82GO:0042761: very long-chain fatty acid biosynthetic process5.85E-03
83GO:0010449: root meristem growth5.85E-03
84GO:0006995: cellular response to nitrogen starvation6.51E-03
85GO:0043069: negative regulation of programmed cell death6.51E-03
86GO:0006631: fatty acid metabolic process6.58E-03
87GO:0008283: cell proliferation7.14E-03
88GO:0072593: reactive oxygen species metabolic process7.20E-03
89GO:0015770: sucrose transport7.20E-03
90GO:0048229: gametophyte development7.20E-03
91GO:0008643: carbohydrate transport7.73E-03
92GO:0006979: response to oxidative stress8.12E-03
93GO:0050826: response to freezing8.66E-03
94GO:0002237: response to molecule of bacterial origin9.42E-03
95GO:0007034: vacuolar transport9.42E-03
96GO:0009969: xyloglucan biosynthetic process1.02E-02
97GO:0006096: glycolytic process1.14E-02
98GO:0006487: protein N-linked glycosylation1.19E-02
99GO:0009116: nucleoside metabolic process1.19E-02
100GO:0030150: protein import into mitochondrial matrix1.19E-02
101GO:0006289: nucleotide-excision repair1.19E-02
102GO:0009553: embryo sac development1.33E-02
103GO:0051260: protein homooligomerization1.36E-02
104GO:0048511: rhythmic process1.36E-02
105GO:0010431: seed maturation1.36E-02
106GO:0061077: chaperone-mediated protein folding1.36E-02
107GO:0015992: proton transport1.36E-02
108GO:0016226: iron-sulfur cluster assembly1.45E-02
109GO:0030433: ubiquitin-dependent ERAD pathway1.45E-02
110GO:0007005: mitochondrion organization1.45E-02
111GO:0010584: pollen exine formation1.64E-02
112GO:0042147: retrograde transport, endosome to Golgi1.73E-02
113GO:0010118: stomatal movement1.83E-02
114GO:0015991: ATP hydrolysis coupled proton transport1.83E-02
115GO:0034220: ion transmembrane transport1.83E-02
116GO:0000413: protein peptidyl-prolyl isomerization1.83E-02
117GO:0006520: cellular amino acid metabolic process1.93E-02
118GO:0048868: pollen tube development1.93E-02
119GO:0009556: microsporogenesis2.14E-02
120GO:0006623: protein targeting to vacuole2.14E-02
121GO:0010183: pollen tube guidance2.14E-02
122GO:0048825: cotyledon development2.14E-02
123GO:0009749: response to glucose2.14E-02
124GO:0000302: response to reactive oxygen species2.24E-02
125GO:0010193: response to ozone2.24E-02
126GO:0006635: fatty acid beta-oxidation2.24E-02
127GO:0032502: developmental process2.35E-02
128GO:0009630: gravitropism2.35E-02
129GO:0009567: double fertilization forming a zygote and endosperm2.57E-02
130GO:0006914: autophagy2.57E-02
131GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.67E-02
132GO:0010286: heat acclimation2.68E-02
133GO:0000910: cytokinesis2.80E-02
134GO:0016049: cell growth3.40E-02
135GO:0009817: defense response to fungus, incompatible interaction3.52E-02
136GO:0009832: plant-type cell wall biogenesis3.65E-02
137GO:0006811: ion transport3.77E-02
138GO:0009631: cold acclimation3.90E-02
139GO:0009853: photorespiration4.17E-02
140GO:0006099: tricarboxylic acid cycle4.30E-02
141GO:0048366: leaf development4.33E-02
142GO:0051707: response to other organism4.98E-02
143GO:0009926: auxin polar transport4.98E-02
RankGO TermAdjusted P value
1GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
2GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
3GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
4GO:0003735: structural constituent of ribosome6.74E-24
5GO:0004298: threonine-type endopeptidase activity5.27E-16
6GO:0008233: peptidase activity8.56E-11
7GO:0003729: mRNA binding1.18E-04
8GO:0004656: procollagen-proline 4-dioxygenase activity1.19E-04
9GO:0015288: porin activity2.00E-04
10GO:0000824: inositol tetrakisphosphate 3-kinase activity2.27E-04
11GO:0047326: inositol tetrakisphosphate 5-kinase activity2.27E-04
12GO:0030544: Hsp70 protein binding2.27E-04
13GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.27E-04
14GO:0019786: Atg8-specific protease activity2.27E-04
15GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.27E-04
16GO:0008308: voltage-gated anion channel activity2.48E-04
17GO:0004601: peroxidase activity2.86E-04
18GO:0019843: rRNA binding4.85E-04
19GO:0050291: sphingosine N-acyltransferase activity5.05E-04
20GO:0004618: phosphoglycerate kinase activity5.05E-04
21GO:0004617: phosphoglycerate dehydrogenase activity5.05E-04
22GO:0004047: aminomethyltransferase activity5.05E-04
23GO:0032934: sterol binding5.05E-04
24GO:0008805: carbon-monoxide oxygenase activity5.05E-04
25GO:0019779: Atg8 activating enzyme activity5.05E-04
26GO:0008517: folic acid transporter activity5.05E-04
27GO:0004634: phosphopyruvate hydratase activity5.05E-04
28GO:0005457: GDP-fucose transmembrane transporter activity8.21E-04
29GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity8.21E-04
30GO:0031418: L-ascorbic acid binding9.67E-04
31GO:0008097: 5S rRNA binding1.17E-03
32GO:0017089: glycolipid transporter activity1.17E-03
33GO:0003999: adenine phosphoribosyltransferase activity1.17E-03
34GO:0004449: isocitrate dehydrogenase (NAD+) activity1.17E-03
35GO:0005460: UDP-glucose transmembrane transporter activity1.17E-03
36GO:0004550: nucleoside diphosphate kinase activity1.17E-03
37GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.18E-03
38GO:0051287: NAD binding1.24E-03
39GO:0005515: protein binding1.25E-03
40GO:0008514: organic anion transmembrane transporter activity1.50E-03
41GO:0003756: protein disulfide isomerase activity1.50E-03
42GO:0015368: calcium:cation antiporter activity1.56E-03
43GO:0010011: auxin binding1.56E-03
44GO:0051861: glycolipid binding1.56E-03
45GO:0015369: calcium:proton antiporter activity1.56E-03
46GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.56E-03
47GO:0070628: proteasome binding1.56E-03
48GO:0004576: oligosaccharyl transferase activity1.56E-03
49GO:0019776: Atg8 ligase activity1.56E-03
50GO:0005459: UDP-galactose transmembrane transporter activity1.99E-03
51GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.99E-03
52GO:0004040: amidase activity1.99E-03
53GO:0031593: polyubiquitin binding2.45E-03
54GO:0031177: phosphopantetheine binding2.45E-03
55GO:0036402: proteasome-activating ATPase activity2.45E-03
56GO:0051920: peroxiredoxin activity2.94E-03
57GO:0102391: decanoate--CoA ligase activity2.94E-03
58GO:0000035: acyl binding2.94E-03
59GO:0004602: glutathione peroxidase activity2.94E-03
60GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity3.47E-03
61GO:0016831: carboxy-lyase activity3.47E-03
62GO:0005338: nucleotide-sugar transmembrane transporter activity3.47E-03
63GO:0008121: ubiquinol-cytochrome-c reductase activity3.47E-03
64GO:0004467: long-chain fatty acid-CoA ligase activity3.47E-03
65GO:0016209: antioxidant activity4.02E-03
66GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process4.02E-03
67GO:0015491: cation:cation antiporter activity4.02E-03
68GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.38E-03
69GO:0008417: fucosyltransferase activity5.22E-03
70GO:0000989: transcription factor activity, transcription factor binding5.22E-03
71GO:0003746: translation elongation factor activity5.54E-03
72GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.54E-03
73GO:0045309: protein phosphorylated amino acid binding5.85E-03
74GO:0008559: xenobiotic-transporting ATPase activity7.20E-03
75GO:0004129: cytochrome-c oxidase activity7.20E-03
76GO:0008515: sucrose transmembrane transporter activity7.20E-03
77GO:0008794: arsenate reductase (glutaredoxin) activity7.20E-03
78GO:0019904: protein domain specific binding7.20E-03
79GO:0046961: proton-transporting ATPase activity, rotational mechanism7.20E-03
80GO:0015266: protein channel activity8.66E-03
81GO:0017025: TBP-class protein binding1.02E-02
82GO:0051119: sugar transmembrane transporter activity1.02E-02
83GO:0043130: ubiquitin binding1.19E-02
84GO:0005528: FK506 binding1.19E-02
85GO:0016853: isomerase activity2.03E-02
86GO:0004872: receptor activity2.14E-02
87GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.46E-02
88GO:0003684: damaged DNA binding2.57E-02
89GO:0008483: transaminase activity2.68E-02
90GO:0016597: amino acid binding2.80E-02
91GO:0016887: ATPase activity2.88E-02
92GO:0015250: water channel activity2.91E-02
93GO:0000287: magnesium ion binding3.62E-02
94GO:0050897: cobalt ion binding3.90E-02
95GO:0003993: acid phosphatase activity4.30E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0022626: cytosolic ribosome3.41E-20
3GO:0000502: proteasome complex8.24E-20
4GO:0022625: cytosolic large ribosomal subunit3.28E-16
5GO:0005839: proteasome core complex5.27E-16
6GO:0005829: cytosol1.70E-15
7GO:0005774: vacuolar membrane3.53E-14
8GO:0005840: ribosome2.90E-13
9GO:0022627: cytosolic small ribosomal subunit1.23E-11
10GO:0005773: vacuole1.86E-11
11GO:0009506: plasmodesma1.54E-09
12GO:0015934: large ribosomal subunit2.73E-09
13GO:0019773: proteasome core complex, alpha-subunit complex5.64E-08
14GO:0005783: endoplasmic reticulum6.38E-08
15GO:0005737: cytoplasm3.57E-07
16GO:0016020: membrane1.32E-06
17GO:0005886: plasma membrane5.87E-06
18GO:0005788: endoplasmic reticulum lumen2.96E-05
19GO:0005794: Golgi apparatus3.38E-05
20GO:0005741: mitochondrial outer membrane8.13E-05
21GO:0005730: nucleolus1.75E-04
22GO:0009507: chloroplast1.98E-04
23GO:0046930: pore complex2.48E-04
24GO:0000015: phosphopyruvate hydratase complex5.05E-04
25GO:0046861: glyoxysomal membrane8.21E-04
26GO:0005775: vacuolar lumen1.17E-03
27GO:0033180: proton-transporting V-type ATPase, V1 domain1.17E-03
28GO:0009331: glycerol-3-phosphate dehydrogenase complex1.17E-03
29GO:0005776: autophagosome1.56E-03
30GO:0016471: vacuolar proton-transporting V-type ATPase complex1.56E-03
31GO:0005618: cell wall1.74E-03
32GO:0005746: mitochondrial respiratory chain1.99E-03
33GO:0008250: oligosaccharyltransferase complex1.99E-03
34GO:0005771: multivesicular body2.45E-03
35GO:0030904: retromer complex2.45E-03
36GO:0031597: cytosolic proteasome complex2.94E-03
37GO:0031595: nuclear proteasome complex3.47E-03
38GO:0000421: autophagosome membrane4.02E-03
39GO:0000326: protein storage vacuole4.60E-03
40GO:0009514: glyoxysome4.60E-03
41GO:0005742: mitochondrial outer membrane translocase complex4.60E-03
42GO:0005789: endoplasmic reticulum membrane5.35E-03
43GO:0008540: proteasome regulatory particle, base subcomplex5.85E-03
44GO:0005740: mitochondrial envelope6.51E-03
45GO:0008541: proteasome regulatory particle, lid subcomplex7.20E-03
46GO:0005750: mitochondrial respiratory chain complex III9.42E-03
47GO:0048046: apoplast1.08E-02
48GO:0005769: early endosome1.10E-02
49GO:0005777: peroxisome1.13E-02
50GO:0005758: mitochondrial intermembrane space1.19E-02
51GO:0070469: respiratory chain1.27E-02
52GO:0045271: respiratory chain complex I1.27E-02
53GO:0031410: cytoplasmic vesicle1.45E-02
54GO:0005732: small nucleolar ribonucleoprotein complex1.50E-02
55GO:0005759: mitochondrial matrix2.17E-02
56GO:0009705: plant-type vacuole membrane2.38E-02
57GO:0032580: Golgi cisterna membrane2.57E-02
58GO:0009707: chloroplast outer membrane3.52E-02
59GO:0000325: plant-type vacuole3.90E-02
60GO:0005819: spindle4.43E-02
61GO:0031902: late endosome membrane4.71E-02
62GO:0090406: pollen tube4.98E-02
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Gene type



Gene DE type