Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G27750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
2GO:0015678: high-affinity copper ion transport0.00E+00
3GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0098586: cellular response to virus0.00E+00
6GO:0090071: negative regulation of ribosome biogenesis0.00E+00
7GO:0009715: chalcone biosynthetic process0.00E+00
8GO:0017009: protein-phycocyanobilin linkage0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0015882: L-ascorbic acid transport0.00E+00
12GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
13GO:0051246: regulation of protein metabolic process0.00E+00
14GO:0048564: photosystem I assembly1.97E-07
15GO:0016123: xanthophyll biosynthetic process1.88E-06
16GO:0009658: chloroplast organization4.48E-06
17GO:0000256: allantoin catabolic process6.68E-06
18GO:0015995: chlorophyll biosynthetic process1.13E-05
19GO:0018298: protein-chromophore linkage1.46E-05
20GO:0015979: photosynthesis1.55E-05
21GO:0090391: granum assembly2.33E-05
22GO:0010136: ureide catabolic process2.33E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.10E-05
24GO:0006145: purine nucleobase catabolic process5.10E-05
25GO:0009773: photosynthetic electron transport in photosystem I6.33E-05
26GO:0006021: inositol biosynthetic process9.01E-05
27GO:0010207: photosystem II assembly1.15E-04
28GO:0035434: copper ion transmembrane transport1.40E-04
29GO:0016120: carotene biosynthetic process1.40E-04
30GO:0045038: protein import into chloroplast thylakoid membrane1.40E-04
31GO:0010190: cytochrome b6f complex assembly2.01E-04
32GO:0046855: inositol phosphate dephosphorylation2.01E-04
33GO:0055114: oxidation-reduction process2.24E-04
34GO:0006436: tryptophanyl-tRNA aminoacylation3.86E-04
35GO:1902458: positive regulation of stomatal opening3.86E-04
36GO:0010028: xanthophyll cycle3.86E-04
37GO:0006419: alanyl-tRNA aminoacylation3.86E-04
38GO:0010362: negative regulation of anion channel activity by blue light3.86E-04
39GO:0009443: pyridoxal 5'-phosphate salvage3.86E-04
40GO:0031426: polycistronic mRNA processing3.86E-04
41GO:1904966: positive regulation of vitamin E biosynthetic process3.86E-04
42GO:0033388: putrescine biosynthetic process from arginine3.86E-04
43GO:0071806: protein transmembrane transport3.86E-04
44GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.86E-04
45GO:1904964: positive regulation of phytol biosynthetic process3.86E-04
46GO:0071277: cellular response to calcium ion3.86E-04
47GO:0042371: vitamin K biosynthetic process3.86E-04
48GO:0043686: co-translational protein modification3.86E-04
49GO:0080167: response to karrikin3.97E-04
50GO:0009644: response to high light intensity4.68E-04
51GO:0009657: plastid organization5.37E-04
52GO:0006364: rRNA processing6.58E-04
53GO:0080183: response to photooxidative stress8.38E-04
54GO:1903426: regulation of reactive oxygen species biosynthetic process8.38E-04
55GO:0080185: effector dependent induction by symbiont of host immune response8.38E-04
56GO:0010275: NAD(P)H dehydrogenase complex assembly8.38E-04
57GO:0046741: transport of virus in host, tissue to tissue8.38E-04
58GO:0042853: L-alanine catabolic process8.38E-04
59GO:0009629: response to gravity8.38E-04
60GO:0080005: photosystem stoichiometry adjustment8.38E-04
61GO:0048314: embryo sac morphogenesis8.38E-04
62GO:0019752: carboxylic acid metabolic process8.38E-04
63GO:1902326: positive regulation of chlorophyll biosynthetic process8.38E-04
64GO:2000030: regulation of response to red or far red light8.38E-04
65GO:0030187: melatonin biosynthetic process8.38E-04
66GO:0006435: threonyl-tRNA aminoacylation8.38E-04
67GO:0009446: putrescine biosynthetic process8.38E-04
68GO:0006810: transport1.04E-03
69GO:0006790: sulfur compound metabolic process1.16E-03
70GO:0009767: photosynthetic electron transport chain1.32E-03
71GO:0005977: glycogen metabolic process1.36E-03
72GO:0009405: pathogenesis1.36E-03
73GO:0006013: mannose metabolic process1.36E-03
74GO:0046854: phosphatidylinositol phosphorylation1.66E-03
75GO:0090351: seedling development1.66E-03
76GO:0009853: photorespiration1.88E-03
77GO:0006020: inositol metabolic process1.96E-03
78GO:0071484: cellular response to light intensity1.96E-03
79GO:0046653: tetrahydrofolate metabolic process1.96E-03
80GO:0010239: chloroplast mRNA processing1.96E-03
81GO:0009052: pentose-phosphate shunt, non-oxidative branch1.96E-03
82GO:0090307: mitotic spindle assembly1.96E-03
83GO:0006809: nitric oxide biosynthetic process1.96E-03
84GO:0051016: barbed-end actin filament capping1.96E-03
85GO:0046739: transport of virus in multicellular host1.96E-03
86GO:0042989: sequestering of actin monomers1.96E-03
87GO:0050482: arachidonic acid secretion1.96E-03
88GO:0043572: plastid fission1.96E-03
89GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.96E-03
90GO:0006825: copper ion transport2.27E-03
91GO:0009768: photosynthesis, light harvesting in photosystem I2.27E-03
92GO:0007017: microtubule-based process2.27E-03
93GO:0009735: response to cytokinin2.28E-03
94GO:0042274: ribosomal small subunit biogenesis2.63E-03
95GO:0009765: photosynthesis, light harvesting2.63E-03
96GO:0031122: cytoplasmic microtubule organization2.63E-03
97GO:0006221: pyrimidine nucleotide biosynthetic process2.63E-03
98GO:0009902: chloroplast relocation2.63E-03
99GO:0010021: amylopectin biosynthetic process2.63E-03
100GO:0009306: protein secretion3.24E-03
101GO:0031365: N-terminal protein amino acid modification3.37E-03
102GO:0009616: virus induced gene silencing3.37E-03
103GO:0016558: protein import into peroxisome matrix3.37E-03
104GO:0030041: actin filament polymerization3.37E-03
105GO:0010117: photoprotection3.37E-03
106GO:0008033: tRNA processing3.79E-03
107GO:0042549: photosystem II stabilization4.17E-03
108GO:0035194: posttranscriptional gene silencing by RNA4.17E-03
109GO:0009643: photosynthetic acclimation4.17E-03
110GO:0009791: post-embryonic development4.71E-03
111GO:0071470: cellular response to osmotic stress5.02E-03
112GO:0017148: negative regulation of translation5.02E-03
113GO:1901259: chloroplast rRNA processing5.02E-03
114GO:0010189: vitamin E biosynthetic process5.02E-03
115GO:0010193: response to ozone5.05E-03
116GO:0019761: glucosinolate biosynthetic process5.39E-03
117GO:0006401: RNA catabolic process5.94E-03
118GO:0048528: post-embryonic root development5.94E-03
119GO:0009772: photosynthetic electron transport in photosystem II5.94E-03
120GO:1900056: negative regulation of leaf senescence5.94E-03
121GO:0010196: nonphotochemical quenching5.94E-03
122GO:0009645: response to low light intensity stimulus5.94E-03
123GO:0006400: tRNA modification5.94E-03
124GO:0051510: regulation of unidimensional cell growth5.94E-03
125GO:0031540: regulation of anthocyanin biosynthetic process6.90E-03
126GO:0006644: phospholipid metabolic process6.90E-03
127GO:0006402: mRNA catabolic process6.90E-03
128GO:0030091: protein repair6.90E-03
129GO:0009642: response to light intensity6.90E-03
130GO:0006605: protein targeting6.90E-03
131GO:0009704: de-etiolation6.90E-03
132GO:0042255: ribosome assembly6.90E-03
133GO:0006353: DNA-templated transcription, termination6.90E-03
134GO:2000070: regulation of response to water deprivation6.90E-03
135GO:0010027: thylakoid membrane organization7.31E-03
136GO:0017004: cytochrome complex assembly7.92E-03
137GO:0032544: plastid translation7.92E-03
138GO:0098656: anion transmembrane transport8.99E-03
139GO:0009821: alkaloid biosynthetic process8.99E-03
140GO:0090333: regulation of stomatal closure8.99E-03
141GO:0048507: meristem development8.99E-03
142GO:0000373: Group II intron splicing8.99E-03
143GO:1900426: positive regulation of defense response to bacterium1.01E-02
144GO:0009638: phototropism1.01E-02
145GO:0009098: leucine biosynthetic process1.01E-02
146GO:0010380: regulation of chlorophyll biosynthetic process1.01E-02
147GO:0031425: chloroplast RNA processing1.01E-02
148GO:0009407: toxin catabolic process1.06E-02
149GO:0006979: response to oxidative stress1.10E-02
150GO:0045036: protein targeting to chloroplast1.13E-02
151GO:0006949: syncytium formation1.13E-02
152GO:0006259: DNA metabolic process1.13E-02
153GO:0009637: response to blue light1.21E-02
154GO:0006265: DNA topological change1.25E-02
155GO:0045037: protein import into chloroplast stroma1.38E-02
156GO:0009725: response to hormone1.51E-02
157GO:0005986: sucrose biosynthetic process1.51E-02
158GO:0006807: nitrogen compound metabolic process1.51E-02
159GO:0010114: response to red light1.57E-02
160GO:0010020: chloroplast fission1.64E-02
161GO:0009636: response to toxic substance1.77E-02
162GO:0019853: L-ascorbic acid biosynthetic process1.78E-02
163GO:0006863: purine nucleobase transport1.92E-02
164GO:0006833: water transport1.92E-02
165GO:0009409: response to cold1.94E-02
166GO:0080147: root hair cell development2.07E-02
167GO:0009863: salicylic acid mediated signaling pathway2.07E-02
168GO:0007010: cytoskeleton organization2.07E-02
169GO:0042254: ribosome biogenesis2.14E-02
170GO:0009793: embryo development ending in seed dormancy2.19E-02
171GO:0010224: response to UV-B2.20E-02
172GO:0051302: regulation of cell division2.22E-02
173GO:0006418: tRNA aminoacylation for protein translation2.22E-02
174GO:0051321: meiotic cell cycle2.37E-02
175GO:0080092: regulation of pollen tube growth2.53E-02
176GO:0016226: iron-sulfur cluster assembly2.53E-02
177GO:0046686: response to cadmium ion2.53E-02
178GO:0006730: one-carbon metabolic process2.53E-02
179GO:0009625: response to insect2.69E-02
180GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.69E-02
181GO:0009553: embryo sac development2.93E-02
182GO:0016117: carotenoid biosynthetic process3.03E-02
183GO:0010118: stomatal movement3.20E-02
184GO:0006606: protein import into nucleus3.20E-02
185GO:0034220: ion transmembrane transport3.20E-02
186GO:0000413: protein peptidyl-prolyl isomerization3.20E-02
187GO:0048868: pollen tube development3.38E-02
188GO:0007059: chromosome segregation3.55E-02
189GO:0015986: ATP synthesis coupled proton transport3.55E-02
190GO:0019252: starch biosynthetic process3.74E-02
191GO:0008654: phospholipid biosynthetic process3.74E-02
192GO:0000302: response to reactive oxygen species3.92E-02
193GO:0006635: fatty acid beta-oxidation3.92E-02
194GO:0009058: biosynthetic process3.98E-02
195GO:0032502: developmental process4.11E-02
196GO:0016032: viral process4.11E-02
197GO:0009828: plant-type cell wall loosening4.49E-02
198GO:0010286: heat acclimation4.69E-02
RankGO TermAdjusted P value
1GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
5GO:0050281: serine-glyoxylate transaminase activity0.00E+00
6GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
7GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0016210: naringenin-chalcone synthase activity0.00E+00
10GO:0008115: sarcosine oxidase activity0.00E+00
11GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
12GO:0010276: phytol kinase activity0.00E+00
13GO:0045435: lycopene epsilon cyclase activity0.00E+00
14GO:0015229: L-ascorbic acid transporter activity0.00E+00
15GO:0004760: serine-pyruvate transaminase activity0.00E+00
16GO:0042623: ATPase activity, coupled0.00E+00
17GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
18GO:0052832: inositol monophosphate 3-phosphatase activity6.68E-06
19GO:0008934: inositol monophosphate 1-phosphatase activity6.68E-06
20GO:0052833: inositol monophosphate 4-phosphatase activity6.68E-06
21GO:0016851: magnesium chelatase activity5.10E-05
22GO:0048038: quinone binding5.72E-05
23GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.01E-05
24GO:0008453: alanine-glyoxylate transaminase activity9.01E-05
25GO:0016168: chlorophyll binding1.27E-04
26GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.71E-04
27GO:0019899: enzyme binding3.51E-04
28GO:0004654: polyribonucleotide nucleotidyltransferase activity3.86E-04
29GO:0010347: L-galactose-1-phosphate phosphatase activity3.86E-04
30GO:0035671: enone reductase activity3.86E-04
31GO:0004451: isocitrate lyase activity3.86E-04
32GO:0047958: glycine:2-oxoglutarate aminotransferase activity3.86E-04
33GO:0004813: alanine-tRNA ligase activity3.86E-04
34GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity3.86E-04
35GO:0047911: galacturan 1,4-alpha-galacturonidase activity3.86E-04
36GO:0042586: peptide deformylase activity3.86E-04
37GO:0004830: tryptophan-tRNA ligase activity3.86E-04
38GO:0030941: chloroplast targeting sequence binding3.86E-04
39GO:0005375: copper ion transmembrane transporter activity5.37E-04
40GO:0009977: proton motive force dependent protein transmembrane transporter activity8.38E-04
41GO:0004829: threonine-tRNA ligase activity8.38E-04
42GO:0019156: isoamylase activity8.38E-04
43GO:0003862: 3-isopropylmalate dehydrogenase activity8.38E-04
44GO:0005089: Rho guanyl-nucleotide exchange factor activity1.02E-03
45GO:0070402: NADPH binding1.36E-03
46GO:0015089: high-affinity copper ion transmembrane transporter activity1.36E-03
47GO:0010277: chlorophyllide a oxygenase [overall] activity1.36E-03
48GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.36E-03
49GO:0050307: sucrose-phosphate phosphatase activity1.36E-03
50GO:0032947: protein complex scaffold1.36E-03
51GO:0004848: ureidoglycolate hydrolase activity1.36E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.36E-03
53GO:0004751: ribose-5-phosphate isomerase activity1.36E-03
54GO:0019843: rRNA binding1.58E-03
55GO:0031409: pigment binding1.85E-03
56GO:0048027: mRNA 5'-UTR binding1.96E-03
57GO:0009041: uridylate kinase activity1.96E-03
58GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.96E-03
59GO:0009882: blue light photoreceptor activity1.96E-03
60GO:0043023: ribosomal large subunit binding1.96E-03
61GO:0016491: oxidoreductase activity2.31E-03
62GO:0004364: glutathione transferase activity2.47E-03
63GO:0051861: glycolipid binding2.63E-03
64GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.63E-03
65GO:0043015: gamma-tubulin binding2.63E-03
66GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.63E-03
67GO:0043495: protein anchor2.63E-03
68GO:0051537: 2 iron, 2 sulfur cluster binding2.87E-03
69GO:0022891: substrate-specific transmembrane transporter activity2.98E-03
70GO:0003727: single-stranded RNA binding3.24E-03
71GO:0051011: microtubule minus-end binding3.37E-03
72GO:0004623: phospholipase A2 activity3.37E-03
73GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.37E-03
74GO:0003785: actin monomer binding3.37E-03
75GO:0008080: N-acetyltransferase activity4.09E-03
76GO:0004605: phosphatidate cytidylyltransferase activity4.17E-03
77GO:0004556: alpha-amylase activity4.17E-03
78GO:0000293: ferric-chelate reductase activity4.17E-03
79GO:0042578: phosphoric ester hydrolase activity4.17E-03
80GO:0004559: alpha-mannosidase activity5.02E-03
81GO:0008195: phosphatidate phosphatase activity5.02E-03
82GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.02E-03
83GO:0015631: tubulin binding5.02E-03
84GO:0004033: aldo-keto reductase (NADP) activity6.90E-03
85GO:0003724: RNA helicase activity7.92E-03
86GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.92E-03
87GO:0008565: protein transporter activity9.99E-03
88GO:0016844: strictosidine synthase activity1.01E-02
89GO:0045309: protein phosphorylated amino acid binding1.01E-02
90GO:0019904: protein domain specific binding1.25E-02
91GO:0000049: tRNA binding1.38E-02
92GO:0004089: carbonate dehydratase activity1.51E-02
93GO:0000155: phosphorelay sensor kinase activity1.51E-02
94GO:0000175: 3'-5'-exoribonuclease activity1.51E-02
95GO:0008081: phosphoric diester hydrolase activity1.51E-02
96GO:0005315: inorganic phosphate transmembrane transporter activity1.51E-02
97GO:0042802: identical protein binding1.63E-02
98GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.64E-02
99GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.83E-02
100GO:0051536: iron-sulfur cluster binding2.07E-02
101GO:0005528: FK506 binding2.07E-02
102GO:0043424: protein histidine kinase binding2.22E-02
103GO:0005345: purine nucleobase transmembrane transporter activity2.22E-02
104GO:0008514: organic anion transmembrane transporter activity2.86E-02
105GO:0003779: actin binding2.93E-02
106GO:0005506: iron ion binding2.99E-02
107GO:0004812: aminoacyl-tRNA ligase activity3.03E-02
108GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.38E-02
109GO:0016853: isomerase activity3.55E-02
110GO:0010181: FMN binding3.55E-02
111GO:0004872: receptor activity3.74E-02
112GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.88E-02
113GO:0016762: xyloglucan:xyloglucosyl transferase activity3.92E-02
114GO:0008483: transaminase activity4.69E-02
115GO:0005200: structural constituent of cytoskeleton4.69E-02
116GO:0008237: metallopeptidase activity4.69E-02
117GO:0009055: electron carrier activity4.81E-02
118GO:0016597: amino acid binding4.89E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast4.14E-56
2GO:0009535: chloroplast thylakoid membrane1.50E-40
3GO:0009570: chloroplast stroma1.61E-16
4GO:0009941: chloroplast envelope1.02E-14
5GO:0009534: chloroplast thylakoid1.35E-13
6GO:0009579: thylakoid2.42E-10
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.27E-07
8GO:0009706: chloroplast inner membrane1.67E-06
9GO:0033281: TAT protein transport complex2.33E-05
10GO:0042644: chloroplast nucleoid2.91E-05
11GO:0009543: chloroplast thylakoid lumen3.99E-05
12GO:0009523: photosystem II5.01E-05
13GO:0030286: dynein complex9.01E-05
14GO:0009654: photosystem II oxygen evolving complex2.16E-04
15GO:0042651: thylakoid membrane2.16E-04
16GO:0010287: plastoglobule2.68E-04
17GO:0031977: thylakoid lumen3.64E-04
18GO:0009782: photosystem I antenna complex3.86E-04
19GO:0009515: granal stacked thylakoid3.86E-04
20GO:0080085: signal recognition particle, chloroplast targeting8.38E-04
21GO:0008274: gamma-tubulin ring complex8.38E-04
22GO:0008290: F-actin capping protein complex8.38E-04
23GO:0009528: plastid inner membrane1.36E-03
24GO:0010007: magnesium chelatase complex1.36E-03
25GO:0009707: chloroplast outer membrane1.39E-03
26GO:0030095: chloroplast photosystem II1.48E-03
27GO:0009536: plastid1.95E-03
28GO:0000923: equatorial microtubule organizing center1.96E-03
29GO:0042646: plastid nucleoid1.96E-03
30GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.63E-03
31GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.17E-03
32GO:0019898: extrinsic component of membrane4.71E-03
33GO:0009533: chloroplast stromal thylakoid5.94E-03
34GO:0031359: integral component of chloroplast outer membrane5.94E-03
35GO:0009505: plant-type cell wall5.98E-03
36GO:0010319: stromule6.51E-03
37GO:0009295: nucleoid6.51E-03
38GO:0005778: peroxisomal membrane6.51E-03
39GO:0031969: chloroplast membrane6.98E-03
40GO:0009539: photosystem II reaction center7.92E-03
41GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.92E-03
42GO:0000922: spindle pole8.99E-03
43GO:0016324: apical plasma membrane1.13E-02
44GO:0009508: plastid chromosome1.51E-02
45GO:0005938: cell cortex1.51E-02
46GO:0030076: light-harvesting complex1.78E-02
47GO:0005875: microtubule associated complex1.92E-02
48GO:0045271: respiratory chain complex I2.22E-02
49GO:0005747: mitochondrial respiratory chain complex I2.59E-02
50GO:0015629: actin cytoskeleton2.69E-02
51GO:0009522: photosystem I3.55E-02
52GO:0005623: cell3.88E-02
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Gene type



Gene DE type