co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
3	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
4	GO:0010477: response to sulfur dioxide	0.00E+00
5	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
6	GO:0042304: regulation of fatty acid biosynthetic process	0.00E+00
7	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
8	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
9	GO:0009661: chromoplast organization	0.00E+00
10	GO:2000013: regulation of arginine biosynthetic process via ornithine	0.00E+00
11	GO:0080005: photosystem stoichiometry adjustment	1.08E-06
12	GO:0006013: mannose metabolic process	4.02E-06
13	GO:0010190: cytochrome b6f complex assembly	4.28E-05
14	GO:0010362: negative regulation of anion channel activity by blue light	1.48E-04
15	GO:0031426: polycistronic mRNA processing	1.48E-04
16	GO:1990052: ER to chloroplast lipid transport	1.48E-04
17	GO:0071806: protein transmembrane transport	1.48E-04
18	GO:0071461: cellular response to redox state	1.48E-04
19	GO:0006436: tryptophanyl-tRNA aminoacylation	1.48E-04
20	GO:0032956: regulation of actin cytoskeleton organization	1.48E-04
21	GO:0006430: lysyl-tRNA aminoacylation	1.48E-04
22	GO:0018298: protein-chromophore linkage	2.40E-04
23	GO:0046741: transport of virus in host, tissue to tissue	3.38E-04
24	GO:0042548: regulation of photosynthesis, light reaction	3.38E-04
25	GO:0048314: embryo sac morphogenesis	3.38E-04
26	GO:0048571: long-day photoperiodism	3.38E-04
27	GO:1904143: positive regulation of carotenoid biosynthetic process	3.38E-04
28	GO:0080185: effector dependent induction by symbiont of host immune response	3.38E-04
29	GO:0019419: sulfate reduction	5.54E-04
30	GO:0031929: TOR signaling	5.54E-04
31	GO:0006696: ergosterol biosynthetic process	5.54E-04
32	GO:0006418: tRNA aminoacylation for protein translation	5.98E-04
33	GO:0010239: chloroplast mRNA processing	7.93E-04
34	GO:0050482: arachidonic acid secretion	7.93E-04
35	GO:0043572: plastid fission	7.93E-04
36	GO:2001141: regulation of RNA biosynthetic process	7.93E-04
37	GO:0071484: cellular response to light intensity	7.93E-04
38	GO:0015994: chlorophyll metabolic process	1.05E-03
39	GO:0009902: chloroplast relocation	1.05E-03
40	GO:0010021: amylopectin biosynthetic process	1.05E-03
41	GO:0006808: regulation of nitrogen utilization	1.05E-03
42	GO:0009791: post-embryonic development	1.21E-03
43	GO:0016120: carotene biosynthetic process	1.33E-03
44	GO:0010117: photoprotection	1.33E-03
45	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.63E-03
46	GO:0033365: protein localization to organelle	1.63E-03
47	GO:0009643: photosynthetic acclimation	1.63E-03
48	GO:0006555: methionine metabolic process	1.63E-03
49	GO:0019509: L-methionine salvage from methylthioadenosine	1.96E-03
50	GO:0010189: vitamin E biosynthetic process	1.96E-03
51	GO:0007623: circadian rhythm	2.05E-03
52	GO:0010038: response to metal ion	2.30E-03
53	GO:0048528: post-embryonic root development	2.30E-03
54	GO:0048481: plant ovule development	2.40E-03
55	GO:0006605: protein targeting	2.66E-03
56	GO:0050821: protein stabilization	2.66E-03
57	GO:0006102: isocitrate metabolic process	2.66E-03
58	GO:0006644: phospholipid metabolic process	2.66E-03
59	GO:0048564: photosystem I assembly	2.66E-03
60	GO:0010043: response to zinc ion	2.77E-03
61	GO:0007568: aging	2.77E-03
62	GO:0019430: removal of superoxide radicals	3.04E-03
63	GO:0071482: cellular response to light stimulus	3.04E-03
64	GO:0048507: meristem development	3.44E-03
65	GO:0009658: chloroplast organization	3.56E-03
66	GO:0009638: phototropism	3.86E-03
67	GO:1900426: positive regulation of defense response to bacterium	3.86E-03
68	GO:0009644: response to high light intensity	4.22E-03
69	GO:0000103: sulfate assimilation	4.29E-03
70	GO:0045036: protein targeting to chloroplast	4.29E-03
71	GO:0031347: regulation of defense response	4.72E-03
72	GO:0009773: photosynthetic electron transport in photosystem I	4.73E-03
73	GO:1903507: negative regulation of nucleic acid-templated transcription	4.73E-03
74	GO:0006352: DNA-templated transcription, initiation	4.73E-03
75	GO:0006790: sulfur compound metabolic process	5.20E-03
76	GO:0006807: nitrogen compound metabolic process	5.68E-03
77	GO:0009718: anthocyanin-containing compound biosynthetic process	5.68E-03
78	GO:0009767: photosynthetic electron transport chain	5.68E-03
79	GO:0005986: sucrose biosynthetic process	5.68E-03
80	GO:0010020: chloroplast fission	6.17E-03
81	GO:0010207: photosystem II assembly	6.17E-03
82	GO:0090351: seedling development	6.67E-03
83	GO:0006071: glycerol metabolic process	7.20E-03
84	GO:0032259: methylation	7.26E-03
85	GO:0019344: cysteine biosynthetic process	7.74E-03
86	GO:0051302: regulation of cell division	8.29E-03
87	GO:0031408: oxylipin biosynthetic process	8.85E-03
88	GO:0051321: meiotic cell cycle	8.85E-03
89	GO:0006366: transcription from RNA polymerase II promoter	8.85E-03
90	GO:0016226: iron-sulfur cluster assembly	9.43E-03
91	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.43E-03
92	GO:0016117: carotenoid biosynthetic process	1.13E-02
93	GO:0042335: cuticle development	1.19E-02
94	GO:0010118: stomatal movement	1.19E-02
95	GO:0006662: glycerol ether metabolic process	1.25E-02
96	GO:0055114: oxidation-reduction process	1.32E-02
97	GO:0019252: starch biosynthetic process	1.39E-02
98	GO:0000302: response to reactive oxygen species	1.45E-02
99	GO:0010468: regulation of gene expression	1.55E-02
100	GO:0030163: protein catabolic process	1.59E-02
101	GO:0006508: proteolysis	1.93E-02
102	GO:0009816: defense response to bacterium, incompatible interaction	1.97E-02
103	GO:0042128: nitrate assimilation	2.04E-02
104	GO:0015995: chlorophyll biosynthetic process	2.12E-02
105	GO:0006950: response to stress	2.12E-02
106	GO:0006457: protein folding	2.20E-02
107	GO:0000160: phosphorelay signal transduction system	2.36E-02
108	GO:0006811: ion transport	2.45E-02
109	GO:0000724: double-strand break repair via homologous recombination	2.61E-02
110	GO:0046777: protein autophosphorylation	2.66E-02
111	GO:0009637: response to blue light	2.70E-02
112	GO:0009853: photorespiration	2.70E-02
113	GO:0034599: cellular response to oxidative stress	2.79E-02
114	GO:0006099: tricarboxylic acid cycle	2.79E-02
115	GO:0015979: photosynthesis	2.84E-02
116	GO:0045454: cell redox homeostasis	2.98E-02
117	GO:0009744: response to sucrose	3.23E-02
118	GO:0009636: response to toxic substance	3.51E-02
119	GO:0006281: DNA repair	3.67E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0008482: sulfite oxidase activity	0.00E+00
3	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
4	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
5	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
6	GO:0010307: acetylglutamate kinase regulator activity	0.00E+00
7	GO:0003913: DNA photolyase activity	4.02E-06
8	GO:0004180: carboxypeptidase activity	4.02E-06
9	GO:0004559: alpha-mannosidase activity	6.00E-05
10	GO:0008080: N-acetyltransferase activity	7.02E-05
11	GO:0004824: lysine-tRNA ligase activity	1.48E-04
12	GO:0051996: squalene synthase activity	1.48E-04
13	GO:0016783: sulfurtransferase activity	1.48E-04
14	GO:0004830: tryptophan-tRNA ligase activity	1.48E-04
15	GO:0030941: chloroplast targeting sequence binding	1.48E-04
16	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.48E-04
17	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.48E-04
18	GO:0035671: enone reductase activity	1.48E-04
19	GO:0004046: aminoacylase activity	3.38E-04
20	GO:0003988: acetyl-CoA C-acyltransferase activity	3.38E-04
21	GO:0009973: adenylyl-sulfate reductase activity	3.38E-04
22	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	3.38E-04
23	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.38E-04
24	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.38E-04
25	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	3.38E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	3.38E-04
27	GO:0004373: glycogen (starch) synthase activity	5.54E-04
28	GO:0032947: protein complex scaffold	5.54E-04
29	GO:0008253: 5'-nucleotidase activity	5.54E-04
30	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.54E-04
31	GO:0050307: sucrose-phosphate phosphatase activity	5.54E-04
32	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.54E-04
33	GO:0048027: mRNA 5'-UTR binding	7.93E-04
34	GO:0004416: hydroxyacylglutathione hydrolase activity	7.93E-04
35	GO:0016851: magnesium chelatase activity	7.93E-04
36	GO:0004792: thiosulfate sulfurtransferase activity	7.93E-04
37	GO:0009882: blue light photoreceptor activity	7.93E-04
38	GO:0004812: aminoacyl-tRNA ligase activity	9.10E-04
39	GO:0016987: sigma factor activity	1.05E-03
40	GO:0009011: starch synthase activity	1.05E-03
41	GO:0001053: plastid sigma factor activity	1.05E-03
42	GO:0005319: lipid transporter activity	1.05E-03
43	GO:0051861: glycolipid binding	1.05E-03
44	GO:0010181: FMN binding	1.13E-03
45	GO:0016491: oxidoreductase activity	1.19E-03
46	GO:0004623: phospholipase A2 activity	1.33E-03
47	GO:0030151: molybdenum ion binding	1.33E-03
48	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.46E-03
49	GO:0000293: ferric-chelate reductase activity	1.63E-03
50	GO:0004784: superoxide dismutase activity	1.63E-03
51	GO:0008236: serine-type peptidase activity	2.29E-03
52	GO:0009881: photoreceptor activity	2.30E-03
53	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.44E-03
54	GO:0071949: FAD binding	3.44E-03
55	GO:0000287: magnesium ion binding	3.48E-03
56	GO:0045309: protein phosphorylated amino acid binding	3.86E-03
57	GO:0004129: cytochrome-c oxidase activity	4.73E-03
58	GO:0019904: protein domain specific binding	4.73E-03
59	GO:0015266: protein channel activity	5.68E-03
60	GO:0031072: heat shock protein binding	5.68E-03
61	GO:0000155: phosphorelay sensor kinase activity	5.68E-03
62	GO:0001046: core promoter sequence-specific DNA binding	7.74E-03
63	GO:0003714: transcription corepressor activity	7.74E-03
64	GO:0051536: iron-sulfur cluster binding	7.74E-03
65	GO:0004176: ATP-dependent peptidase activity	8.85E-03
66	GO:0022891: substrate-specific transmembrane transporter activity	1.00E-02
67	GO:0047134: protein-disulfide reductase activity	1.13E-02
68	GO:0005515: protein binding	1.23E-02
69	GO:0004791: thioredoxin-disulfide reductase activity	1.32E-02
70	GO:0016887: ATPase activity	1.34E-02
71	GO:0048038: quinone binding	1.45E-02
72	GO:0016791: phosphatase activity	1.67E-02
73	GO:0008237: metallopeptidase activity	1.74E-02
74	GO:0008168: methyltransferase activity	1.93E-02
75	GO:0016168: chlorophyll binding	1.97E-02
76	GO:0004721: phosphoprotein phosphatase activity	2.12E-02
77	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.28E-02
78	GO:0004222: metalloendopeptidase activity	2.45E-02
79	GO:0008233: peptidase activity	2.45E-02
80	GO:0030145: manganese ion binding	2.53E-02
81	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.53E-02
82	GO:0061630: ubiquitin protein ligase activity	2.62E-02
83	GO:0004364: glutathione transferase activity	3.14E-02
84	GO:0005198: structural molecule activity	3.51E-02
85	GO:0051287: NAD binding	3.71E-02
86	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.00E-02
87	GO:0031625: ubiquitin protein ligase binding	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.35E-20
2	GO:0009535: chloroplast thylakoid membrane	1.54E-07
3	GO:0031969: chloroplast membrane	1.31E-04
4	GO:0031932: TORC2 complex	1.48E-04
5	GO:0031972: chloroplast intermembrane space	1.48E-04
6	GO:0009534: chloroplast thylakoid	2.36E-04
7	GO:0009570: chloroplast stroma	4.35E-04
8	GO:0009528: plastid inner membrane	5.54E-04
9	GO:0010007: magnesium chelatase complex	5.54E-04
10	GO:0031931: TORC1 complex	5.54E-04
11	GO:0009527: plastid outer membrane	1.05E-03
12	GO:0005739: mitochondrion	1.27E-03
13	GO:0031359: integral component of chloroplast outer membrane	2.30E-03
14	GO:0009707: chloroplast outer membrane	2.40E-03
15	GO:0009501: amyloplast	2.66E-03
16	GO:0042644: chloroplast nucleoid	3.44E-03
17	GO:0005777: peroxisome	4.47E-03
18	GO:0005747: mitochondrial respiratory chain complex I	6.40E-03
19	GO:0005773: vacuole	6.47E-03
20	GO:0042651: thylakoid membrane	8.29E-03
21	GO:0045271: respiratory chain complex I	8.29E-03
22	GO:0010287: plastoglobule	8.86E-03
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.06E-02
24	GO:0009523: photosystem II	1.39E-02
25	GO:0010319: stromule	1.74E-02
26	GO:0031977: thylakoid lumen	3.05E-02
27	GO:0031966: mitochondrial membrane	3.80E-02
28	GO:0009941: chloroplast envelope	3.91E-02
29	GO:0009536: plastid	4.92E-02