GO Enrichment Analysis of Co-expressed Genes with
AT3G27280
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 3 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 4 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 5 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 7 | GO:0031120: snRNA pseudouridine synthesis | 0.00E+00 |
| 8 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 9 | GO:0031118: rRNA pseudouridine synthesis | 0.00E+00 |
| 10 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 11 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 12 | GO:0006412: translation | 4.45E-13 |
| 13 | GO:0006364: rRNA processing | 5.03E-12 |
| 14 | GO:0042254: ribosome biogenesis | 1.49E-05 |
| 15 | GO:0006626: protein targeting to mitochondrion | 1.60E-05 |
| 16 | GO:0042273: ribosomal large subunit biogenesis | 2.35E-05 |
| 17 | GO:0031167: rRNA methylation | 3.81E-05 |
| 18 | GO:0007005: mitochondrion organization | 5.38E-05 |
| 19 | GO:0006458: 'de novo' protein folding | 7.89E-05 |
| 20 | GO:0008033: tRNA processing | 8.95E-05 |
| 21 | GO:0010197: polar nucleus fusion | 1.00E-04 |
| 22 | GO:0001510: RNA methylation | 1.69E-04 |
| 23 | GO:0006177: GMP biosynthetic process | 1.75E-04 |
| 24 | GO:0043985: histone H4-R3 methylation | 1.75E-04 |
| 25 | GO:0006169: adenosine salvage | 1.75E-04 |
| 26 | GO:0010162: seed dormancy process | 2.90E-04 |
| 27 | GO:0045041: protein import into mitochondrial intermembrane space | 3.96E-04 |
| 28 | GO:0009967: positive regulation of signal transduction | 3.96E-04 |
| 29 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.96E-04 |
| 30 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 3.96E-04 |
| 31 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 3.96E-04 |
| 32 | GO:0045039: protein import into mitochondrial inner membrane | 6.47E-04 |
| 33 | GO:0000027: ribosomal large subunit assembly | 6.82E-04 |
| 34 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.82E-04 |
| 35 | GO:0006334: nucleosome assembly | 8.23E-04 |
| 36 | GO:0061077: chaperone-mediated protein folding | 8.23E-04 |
| 37 | GO:0051085: chaperone mediated protein folding requiring cofactor | 9.23E-04 |
| 38 | GO:0009855: determination of bilateral symmetry | 9.23E-04 |
| 39 | GO:0051131: chaperone-mediated protein complex assembly | 9.23E-04 |
| 40 | GO:0006986: response to unfolded protein | 9.23E-04 |
| 41 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 9.23E-04 |
| 42 | GO:0007004: telomere maintenance via telomerase | 9.23E-04 |
| 43 | GO:0009294: DNA mediated transformation | 9.77E-04 |
| 44 | GO:1900864: mitochondrial RNA modification | 1.22E-03 |
| 45 | GO:0000460: maturation of 5.8S rRNA | 1.22E-03 |
| 46 | GO:0044205: 'de novo' UMP biosynthetic process | 1.22E-03 |
| 47 | GO:0010501: RNA secondary structure unwinding | 1.23E-03 |
| 48 | GO:0009553: embryo sac development | 1.34E-03 |
| 49 | GO:0006396: RNA processing | 1.44E-03 |
| 50 | GO:0044209: AMP salvage | 1.56E-03 |
| 51 | GO:0080156: mitochondrial mRNA modification | 1.63E-03 |
| 52 | GO:0000470: maturation of LSU-rRNA | 1.91E-03 |
| 53 | GO:0016554: cytidine to uridine editing | 1.91E-03 |
| 54 | GO:0000741: karyogamy | 1.91E-03 |
| 55 | GO:0042026: protein refolding | 2.30E-03 |
| 56 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.30E-03 |
| 57 | GO:0000245: spliceosomal complex assembly | 2.30E-03 |
| 58 | GO:0016444: somatic cell DNA recombination | 2.30E-03 |
| 59 | GO:0046686: response to cadmium ion | 2.67E-03 |
| 60 | GO:0080186: developmental vegetative growth | 2.70E-03 |
| 61 | GO:0009396: folic acid-containing compound biosynthetic process | 2.70E-03 |
| 62 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 2.70E-03 |
| 63 | GO:0009451: RNA modification | 2.86E-03 |
| 64 | GO:0035265: organ growth | 3.13E-03 |
| 65 | GO:0001522: pseudouridine synthesis | 3.13E-03 |
| 66 | GO:0001558: regulation of cell growth | 3.58E-03 |
| 67 | GO:0007338: single fertilization | 4.05E-03 |
| 68 | GO:0048507: meristem development | 4.05E-03 |
| 69 | GO:0000387: spliceosomal snRNP assembly | 4.54E-03 |
| 70 | GO:0035999: tetrahydrofolate interconversion | 4.54E-03 |
| 71 | GO:1900865: chloroplast RNA modification | 4.54E-03 |
| 72 | GO:0006259: DNA metabolic process | 5.05E-03 |
| 73 | GO:0006541: glutamine metabolic process | 7.28E-03 |
| 74 | GO:0006457: protein folding | 7.74E-03 |
| 75 | GO:0010030: positive regulation of seed germination | 7.89E-03 |
| 76 | GO:0030150: protein import into mitochondrial matrix | 9.15E-03 |
| 77 | GO:0051302: regulation of cell division | 9.80E-03 |
| 78 | GO:0000398: mRNA splicing, via spliceosome | 1.10E-02 |
| 79 | GO:0006730: one-carbon metabolic process | 1.12E-02 |
| 80 | GO:0071215: cellular response to abscisic acid stimulus | 1.19E-02 |
| 81 | GO:0042127: regulation of cell proliferation | 1.26E-02 |
| 82 | GO:0000413: protein peptidyl-prolyl isomerization | 1.41E-02 |
| 83 | GO:0009960: endosperm development | 1.49E-02 |
| 84 | GO:0006635: fatty acid beta-oxidation | 1.72E-02 |
| 85 | GO:0016032: viral process | 1.81E-02 |
| 86 | GO:0009567: double fertilization forming a zygote and endosperm | 1.98E-02 |
| 87 | GO:0009409: response to cold | 2.39E-02 |
| 88 | GO:0016049: cell growth | 2.61E-02 |
| 89 | GO:0010311: lateral root formation | 2.80E-02 |
| 90 | GO:0048527: lateral root development | 3.00E-02 |
| 91 | GO:0000724: double-strand break repair via homologous recombination | 3.10E-02 |
| 92 | GO:0009853: photorespiration | 3.20E-02 |
| 93 | GO:0006099: tricarboxylic acid cycle | 3.31E-02 |
| 94 | GO:0006414: translational elongation | 3.54E-02 |
| 95 | GO:0008283: cell proliferation | 3.84E-02 |
| 96 | GO:0000154: rRNA modification | 4.17E-02 |
| 97 | GO:0009408: response to heat | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 3 | GO:0004152: dihydroorotate dehydrogenase activity | 0.00E+00 |
| 4 | GO:0003922: GMP synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 5 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 6 | GO:0003735: structural constituent of ribosome | 1.54E-19 |
| 7 | GO:0003723: RNA binding | 2.21E-15 |
| 8 | GO:0030515: snoRNA binding | 3.02E-11 |
| 9 | GO:0019843: rRNA binding | 2.44E-09 |
| 10 | GO:0000166: nucleotide binding | 4.41E-07 |
| 11 | GO:0003746: translation elongation factor activity | 1.48E-06 |
| 12 | GO:0008649: rRNA methyltransferase activity | 5.48E-06 |
| 13 | GO:0004001: adenosine kinase activity | 1.75E-04 |
| 14 | GO:0048037: cofactor binding | 1.75E-04 |
| 15 | GO:0042134: rRNA primary transcript binding | 1.75E-04 |
| 16 | GO:0051082: unfolded protein binding | 1.86E-04 |
| 17 | GO:0004004: ATP-dependent RNA helicase activity | 2.87E-04 |
| 18 | GO:0044183: protein binding involved in protein folding | 3.36E-04 |
| 19 | GO:0043021: ribonucleoprotein complex binding | 3.96E-04 |
| 20 | GO:0003938: IMP dehydrogenase activity | 3.96E-04 |
| 21 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 3.96E-04 |
| 22 | GO:0070034: telomerase RNA binding | 3.96E-04 |
| 23 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 3.96E-04 |
| 24 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.96E-04 |
| 25 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 3.96E-04 |
| 26 | GO:0005078: MAP-kinase scaffold activity | 3.96E-04 |
| 27 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 3.96E-04 |
| 28 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.96E-04 |
| 29 | GO:0050897: cobalt ion binding | 3.98E-04 |
| 30 | GO:0005507: copper ion binding | 5.54E-04 |
| 31 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 6.47E-04 |
| 32 | GO:0070181: small ribosomal subunit rRNA binding | 6.47E-04 |
| 33 | GO:0004407: histone deacetylase activity | 6.82E-04 |
| 34 | GO:0051087: chaperone binding | 7.52E-04 |
| 35 | GO:0008026: ATP-dependent helicase activity | 1.50E-03 |
| 36 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 1.91E-03 |
| 37 | GO:0016462: pyrophosphatase activity | 1.91E-03 |
| 38 | GO:0003729: mRNA binding | 2.44E-03 |
| 39 | GO:0008235: metalloexopeptidase activity | 2.70E-03 |
| 40 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.04E-03 |
| 41 | GO:0008173: RNA methyltransferase activity | 3.58E-03 |
| 42 | GO:0003678: DNA helicase activity | 4.05E-03 |
| 43 | GO:0042393: histone binding | 4.38E-03 |
| 44 | GO:0001055: RNA polymerase II activity | 4.54E-03 |
| 45 | GO:0001054: RNA polymerase I activity | 5.58E-03 |
| 46 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.77E-03 |
| 47 | GO:0001056: RNA polymerase III activity | 6.13E-03 |
| 48 | GO:0000049: tRNA binding | 6.13E-03 |
| 49 | GO:0009982: pseudouridine synthase activity | 6.70E-03 |
| 50 | GO:0000175: 3'-5'-exoribonuclease activity | 6.70E-03 |
| 51 | GO:0005528: FK506 binding | 9.15E-03 |
| 52 | GO:0004176: ATP-dependent peptidase activity | 1.05E-02 |
| 53 | GO:0004519: endonuclease activity | 1.16E-02 |
| 54 | GO:0004812: aminoacyl-tRNA ligase activity | 1.33E-02 |
| 55 | GO:0010181: FMN binding | 1.56E-02 |
| 56 | GO:0008236: serine-type peptidase activity | 2.61E-02 |
| 57 | GO:0003697: single-stranded DNA binding | 3.20E-02 |
| 58 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.31E-02 |
| 59 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.52E-02 |
| 60 | GO:0005524: ATP binding | 3.65E-02 |
| 61 | GO:0003924: GTPase activity | 4.65E-02 |
| 62 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 4 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 5 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 6 | GO:0005730: nucleolus | 6.69E-33 |
| 7 | GO:0005840: ribosome | 3.81E-12 |
| 8 | GO:0032040: small-subunit processome | 1.18E-11 |
| 9 | GO:0015030: Cajal body | 6.03E-08 |
| 10 | GO:0005739: mitochondrion | 9.11E-08 |
| 11 | GO:0022625: cytosolic large ribosomal subunit | 1.54E-07 |
| 12 | GO:0022626: cytosolic ribosome | 3.65E-07 |
| 13 | GO:0031428: box C/D snoRNP complex | 4.70E-07 |
| 14 | GO:0022627: cytosolic small ribosomal subunit | 5.71E-07 |
| 15 | GO:0005829: cytosol | 1.25E-06 |
| 16 | GO:0005759: mitochondrial matrix | 3.05E-06 |
| 17 | GO:0005834: heterotrimeric G-protein complex | 1.12E-05 |
| 18 | GO:0031429: box H/ACA snoRNP complex | 1.27E-05 |
| 19 | GO:0030687: preribosome, large subunit precursor | 1.05E-04 |
| 20 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.67E-04 |
| 21 | GO:0005743: mitochondrial inner membrane | 3.89E-04 |
| 22 | GO:0071010: prespliceosome | 3.96E-04 |
| 23 | GO:0070545: PeBoW complex | 3.96E-04 |
| 24 | GO:0034715: pICln-Sm protein complex | 6.47E-04 |
| 25 | GO:0034719: SMN-Sm protein complex | 6.47E-04 |
| 26 | GO:0005758: mitochondrial intermembrane space | 6.82E-04 |
| 27 | GO:0005682: U5 snRNP | 1.22E-03 |
| 28 | GO:0097526: spliceosomal tri-snRNP complex | 1.56E-03 |
| 29 | GO:0000178: exosome (RNase complex) | 1.56E-03 |
| 30 | GO:0005687: U4 snRNP | 1.56E-03 |
| 31 | GO:0000243: commitment complex | 1.91E-03 |
| 32 | GO:0016363: nuclear matrix | 2.30E-03 |
| 33 | GO:0005689: U12-type spliceosomal complex | 2.30E-03 |
| 34 | GO:0034399: nuclear periphery | 3.13E-03 |
| 35 | GO:0015934: large ribosomal subunit | 3.51E-03 |
| 36 | GO:0005736: DNA-directed RNA polymerase I complex | 4.05E-03 |
| 37 | GO:0005685: U1 snRNP | 4.05E-03 |
| 38 | GO:0005774: vacuolar membrane | 4.36E-03 |
| 39 | GO:0016604: nuclear body | 4.54E-03 |
| 40 | GO:0005666: DNA-directed RNA polymerase III complex | 4.54E-03 |
| 41 | GO:0071011: precatalytic spliceosome | 4.54E-03 |
| 42 | GO:0005686: U2 snRNP | 5.05E-03 |
| 43 | GO:0000418: DNA-directed RNA polymerase IV complex | 5.05E-03 |
| 44 | GO:0071013: catalytic step 2 spliceosome | 5.58E-03 |
| 45 | GO:0005618: cell wall | 5.83E-03 |
| 46 | GO:0005665: DNA-directed RNA polymerase II, core complex | 6.13E-03 |
| 47 | GO:0019013: viral nucleocapsid | 6.70E-03 |
| 48 | GO:0005747: mitochondrial respiratory chain complex I | 8.14E-03 |
| 49 | GO:0000419: DNA-directed RNA polymerase V complex | 8.51E-03 |
| 50 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.04E-02 |
| 51 | GO:0015935: small ribosomal subunit | 1.05E-02 |
| 52 | GO:0005773: vacuole | 1.09E-02 |
| 53 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.26E-02 |
| 54 | GO:0009506: plasmodesma | 1.41E-02 |
| 55 | GO:0016592: mediator complex | 1.81E-02 |
| 56 | GO:0009536: plastid | 2.06E-02 |
| 57 | GO:0030529: intracellular ribonucleoprotein complex | 2.24E-02 |
| 58 | GO:0005634: nucleus | 3.48E-02 |