co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0006223: uracil salvage	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0016553: base conversion or substitution editing	0.00E+00
10	GO:0010157: response to chlorate	0.00E+00
11	GO:0006412: translation	1.32E-14
12	GO:0015979: photosynthesis	3.04E-14
13	GO:0009735: response to cytokinin	4.25E-13
14	GO:0032544: plastid translation	9.33E-12
15	GO:0042254: ribosome biogenesis	9.63E-09
16	GO:0009773: photosynthetic electron transport in photosystem I	1.30E-08
17	GO:0009409: response to cold	9.57E-08
18	GO:0019464: glycine decarboxylation via glycine cleavage system	5.35E-07
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.84E-06
20	GO:0015995: chlorophyll biosynthetic process	6.09E-06
21	GO:0006000: fructose metabolic process	1.71E-05
22	GO:0042742: defense response to bacterium	4.01E-05
23	GO:0010021: amylopectin biosynthetic process	6.79E-05
24	GO:0010027: thylakoid membrane organization	7.28E-05
25	GO:0009817: defense response to fungus, incompatible interaction	1.19E-04
26	GO:0009658: chloroplast organization	1.42E-04
27	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.54E-04
28	GO:0010196: nonphotochemical quenching	2.73E-04
29	GO:0000413: protein peptidyl-prolyl isomerization	3.14E-04
30	GO:0000023: maltose metabolic process	3.27E-04
31	GO:0000025: maltose catabolic process	3.27E-04
32	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.27E-04
33	GO:0043489: RNA stabilization	3.27E-04
34	GO:0005978: glycogen biosynthetic process	3.44E-04
35	GO:0019252: starch biosynthetic process	4.19E-04
36	GO:0006002: fructose 6-phosphate metabolic process	4.21E-04
37	GO:0010206: photosystem II repair	5.07E-04
38	GO:0010270: photosystem II oxygen evolving complex assembly	7.13E-04
39	GO:0019388: galactose catabolic process	7.13E-04
40	GO:0005976: polysaccharide metabolic process	7.13E-04
41	GO:0005983: starch catabolic process	9.18E-04
42	GO:0045037: protein import into chloroplast stroma	9.18E-04
43	GO:0005986: sucrose biosynthetic process	1.04E-03
44	GO:0006094: gluconeogenesis	1.04E-03
45	GO:0048281: inflorescence morphogenesis	1.16E-03
46	GO:0006518: peptide metabolic process	1.16E-03
47	GO:0016050: vesicle organization	1.16E-03
48	GO:2001295: malonyl-CoA biosynthetic process	1.16E-03
49	GO:0010020: chloroplast fission	1.17E-03
50	GO:0006633: fatty acid biosynthetic process	1.53E-03
51	GO:0006289: nucleotide-excision repair	1.61E-03
52	GO:0051085: chaperone mediated protein folding requiring cofactor	1.66E-03
53	GO:0006241: CTP biosynthetic process	1.66E-03
54	GO:0010306: rhamnogalacturonan II biosynthetic process	1.66E-03
55	GO:0006165: nucleoside diphosphate phosphorylation	1.66E-03
56	GO:0006228: UTP biosynthetic process	1.66E-03
57	GO:0010731: protein glutathionylation	1.66E-03
58	GO:0010148: transpiration	1.66E-03
59	GO:0006424: glutamyl-tRNA aminoacylation	1.66E-03
60	GO:0009590: detection of gravity	1.66E-03
61	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.66E-03
62	GO:0009765: photosynthesis, light harvesting	2.23E-03
63	GO:0006109: regulation of carbohydrate metabolic process	2.23E-03
64	GO:0006183: GTP biosynthetic process	2.23E-03
65	GO:0045727: positive regulation of translation	2.23E-03
66	GO:2000122: negative regulation of stomatal complex development	2.23E-03
67	GO:0006546: glycine catabolic process	2.23E-03
68	GO:0044206: UMP salvage	2.23E-03
69	GO:0010037: response to carbon dioxide	2.23E-03
70	GO:0006808: regulation of nitrogen utilization	2.23E-03
71	GO:0015976: carbon utilization	2.23E-03
72	GO:0006457: protein folding	2.76E-03
73	GO:0000304: response to singlet oxygen	2.84E-03
74	GO:0006544: glycine metabolic process	2.84E-03
75	GO:0032543: mitochondrial translation	2.84E-03
76	GO:0043097: pyrimidine nucleoside salvage	2.84E-03
77	GO:0006461: protein complex assembly	2.84E-03
78	GO:0000470: maturation of LSU-rRNA	3.51E-03
79	GO:0006828: manganese ion transport	3.51E-03
80	GO:0010190: cytochrome b6f complex assembly	3.51E-03
81	GO:0006206: pyrimidine nucleobase metabolic process	3.51E-03
82	GO:0006563: L-serine metabolic process	3.51E-03
83	GO:0042549: photosystem II stabilization	3.51E-03
84	GO:0009955: adaxial/abaxial pattern specification	4.23E-03
85	GO:0042026: protein refolding	4.23E-03
86	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.23E-03
87	GO:1901259: chloroplast rRNA processing	4.23E-03
88	GO:0010555: response to mannitol	4.23E-03
89	GO:0070370: cellular heat acclimation	4.99E-03
90	GO:0009645: response to low light intensity stimulus	4.99E-03
91	GO:0010103: stomatal complex morphogenesis	4.99E-03
92	GO:0008610: lipid biosynthetic process	5.80E-03
93	GO:0009642: response to light intensity	5.80E-03
94	GO:0009704: de-etiolation	5.80E-03
95	GO:0045454: cell redox homeostasis	6.27E-03
96	GO:0001558: regulation of cell growth	6.65E-03
97	GO:0009657: plastid organization	6.65E-03
98	GO:0006979: response to oxidative stress	6.77E-03
99	GO:0006783: heme biosynthetic process	7.54E-03
100	GO:0010205: photoinhibition	8.48E-03
101	GO:0035999: tetrahydrofolate interconversion	8.48E-03
102	GO:0042761: very long-chain fatty acid biosynthetic process	8.48E-03
103	GO:0005982: starch metabolic process	8.48E-03
104	GO:0009853: photorespiration	9.44E-03
105	GO:0006782: protoporphyrinogen IX biosynthetic process	9.45E-03
106	GO:0043069: negative regulation of programmed cell death	9.45E-03
107	GO:0034599: cellular response to oxidative stress	9.88E-03
108	GO:0006816: calcium ion transport	1.05E-02
109	GO:0043085: positive regulation of catalytic activity	1.05E-02
110	GO:0006415: translational termination	1.05E-02
111	GO:0009750: response to fructose	1.05E-02
112	GO:0016485: protein processing	1.05E-02
113	GO:0006631: fatty acid metabolic process	1.12E-02
114	GO:0010102: lateral root morphogenesis	1.26E-02
115	GO:0006006: glucose metabolic process	1.26E-02
116	GO:0009767: photosynthetic electron transport chain	1.26E-02
117	GO:0010207: photosystem II assembly	1.37E-02
118	GO:0019253: reductive pentose-phosphate cycle	1.37E-02
119	GO:0006810: transport	1.40E-02
120	GO:0005985: sucrose metabolic process	1.49E-02
121	GO:0010025: wax biosynthetic process	1.61E-02
122	GO:0006636: unsaturated fatty acid biosynthetic process	1.61E-02
123	GO:0019344: cysteine biosynthetic process	1.73E-02
124	GO:0009116: nucleoside metabolic process	1.73E-02
125	GO:0000027: ribosomal large subunit assembly	1.73E-02
126	GO:0009944: polarity specification of adaxial/abaxial axis	1.73E-02
127	GO:0051017: actin filament bundle assembly	1.73E-02
128	GO:0051302: regulation of cell division	1.86E-02
129	GO:0006418: tRNA aminoacylation for protein translation	1.86E-02
130	GO:0007017: microtubule-based process	1.86E-02
131	GO:0009768: photosynthesis, light harvesting in photosystem I	1.86E-02
132	GO:0061077: chaperone-mediated protein folding	1.99E-02
133	GO:0031408: oxylipin biosynthetic process	1.99E-02
134	GO:0016114: terpenoid biosynthetic process	1.99E-02
135	GO:0007005: mitochondrion organization	2.12E-02
136	GO:0009686: gibberellin biosynthetic process	2.25E-02
137	GO:0009411: response to UV	2.25E-02
138	GO:0001944: vasculature development	2.25E-02
139	GO:0006012: galactose metabolic process	2.25E-02
140	GO:0006284: base-excision repair	2.39E-02
141	GO:0006662: glycerol ether metabolic process	2.82E-02
142	GO:0048868: pollen tube development	2.82E-02
143	GO:0055114: oxidation-reduction process	2.92E-02
144	GO:0015986: ATP synthesis coupled proton transport	2.97E-02
145	GO:0000302: response to reactive oxygen species	3.28E-02
146	GO:0009793: embryo development ending in seed dormancy	3.30E-02
147	GO:0009790: embryo development	3.43E-02
148	GO:0032502: developmental process	3.44E-02
149	GO:0030163: protein catabolic process	3.60E-02
150	GO:0008152: metabolic process	3.67E-02
151	GO:0007623: circadian rhythm	4.05E-02
152	GO:0046686: response to cadmium ion	4.21E-02
153	GO:0009627: systemic acquired resistance	4.61E-02
154	GO:0016311: dephosphorylation	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0009899: ent-kaurene synthase activity	0.00E+00
10	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
11	GO:0051738: xanthophyll binding	0.00E+00
12	GO:0019843: rRNA binding	8.07E-23
13	GO:0003735: structural constituent of ribosome	2.28E-17
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.66E-09
15	GO:0008266: poly(U) RNA binding	4.27E-08
16	GO:0005528: FK506 binding	1.13E-07
17	GO:0051920: peroxiredoxin activity	4.04E-06
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.84E-06
19	GO:0016209: antioxidant activity	9.78E-06
20	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.81E-05
21	GO:0016851: magnesium chelatase activity	3.81E-05
22	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.27E-04
23	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.27E-04
24	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.27E-04
25	GO:0080132: fatty acid alpha-hydroxylase activity	3.27E-04
26	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.27E-04
27	GO:0004856: xylulokinase activity	3.27E-04
28	GO:0009496: plastoquinol--plastocyanin reductase activity	3.27E-04
29	GO:0004134: 4-alpha-glucanotransferase activity	3.27E-04
30	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.27E-04
31	GO:0004853: uroporphyrinogen decarboxylase activity	3.27E-04
32	GO:0045485: omega-6 fatty acid desaturase activity	3.27E-04
33	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	3.27E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	7.13E-04
35	GO:0018708: thiol S-methyltransferase activity	7.13E-04
36	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.13E-04
37	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	7.13E-04
38	GO:0004614: phosphoglucomutase activity	7.13E-04
39	GO:0008967: phosphoglycolate phosphatase activity	7.13E-04
40	GO:0010297: heteropolysaccharide binding	7.13E-04
41	GO:0004222: metalloendopeptidase activity	1.15E-03
42	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.16E-03
43	GO:0004324: ferredoxin-NADP+ reductase activity	1.16E-03
44	GO:0043169: cation binding	1.16E-03
45	GO:0004373: glycogen (starch) synthase activity	1.16E-03
46	GO:0017150: tRNA dihydrouridine synthase activity	1.16E-03
47	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.16E-03
48	GO:0002161: aminoacyl-tRNA editing activity	1.16E-03
49	GO:0005504: fatty acid binding	1.16E-03
50	GO:0004148: dihydrolipoyl dehydrogenase activity	1.16E-03
51	GO:0004075: biotin carboxylase activity	1.16E-03
52	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.16E-03
53	GO:0030267: glyoxylate reductase (NADP) activity	1.16E-03
54	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.16E-03
55	GO:0016491: oxidoreductase activity	1.26E-03
56	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.66E-03
57	GO:0016149: translation release factor activity, codon specific	1.66E-03
58	GO:0004550: nucleoside diphosphate kinase activity	1.66E-03
59	GO:0043023: ribosomal large subunit binding	1.66E-03
60	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.23E-03
61	GO:0019104: DNA N-glycosylase activity	2.23E-03
62	GO:0045430: chalcone isomerase activity	2.23E-03
63	GO:0019199: transmembrane receptor protein kinase activity	2.23E-03
64	GO:0009011: starch synthase activity	2.23E-03
65	GO:0042277: peptide binding	2.23E-03
66	GO:0004845: uracil phosphoribosyltransferase activity	2.23E-03
67	GO:0004372: glycine hydroxymethyltransferase activity	2.84E-03
68	GO:0003959: NADPH dehydrogenase activity	2.84E-03
69	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.84E-03
70	GO:0004040: amidase activity	2.84E-03
71	GO:0003989: acetyl-CoA carboxylase activity	2.84E-03
72	GO:0050662: coenzyme binding	3.43E-03
73	GO:0004601: peroxidase activity	3.44E-03
74	GO:0004130: cytochrome-c peroxidase activity	3.51E-03
75	GO:2001070: starch binding	3.51E-03
76	GO:0048038: quinone binding	3.94E-03
77	GO:0004849: uridine kinase activity	4.23E-03
78	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.23E-03
79	GO:0004602: glutathione peroxidase activity	4.23E-03
80	GO:0051082: unfolded protein binding	4.34E-03
81	GO:0004620: phospholipase activity	4.99E-03
82	GO:0004034: aldose 1-epimerase activity	5.80E-03
83	GO:0004033: aldo-keto reductase (NADP) activity	5.80E-03
84	GO:0016168: chlorophyll binding	6.03E-03
85	GO:0004252: serine-type endopeptidase activity	6.60E-03
86	GO:0015078: hydrogen ion transmembrane transporter activity	6.65E-03
87	GO:0008236: serine-type peptidase activity	7.07E-03
88	GO:0003747: translation release factor activity	7.54E-03
89	GO:0005384: manganese ion transmembrane transporter activity	8.48E-03
90	GO:0047617: acyl-CoA hydrolase activity	8.48E-03
91	GO:0008047: enzyme activator activity	9.45E-03
92	GO:0044183: protein binding involved in protein folding	1.05E-02
93	GO:0047372: acylglycerol lipase activity	1.05E-02
94	GO:0016787: hydrolase activity	1.10E-02
95	GO:0000049: tRNA binding	1.15E-02
96	GO:0004089: carbonate dehydratase activity	1.26E-02
97	GO:0015095: magnesium ion transmembrane transporter activity	1.26E-02
98	GO:0031072: heat shock protein binding	1.26E-02
99	GO:0051537: 2 iron, 2 sulfur cluster binding	1.32E-02
100	GO:0005198: structural molecule activity	1.37E-02
101	GO:0031409: pigment binding	1.61E-02
102	GO:0004857: enzyme inhibitor activity	1.73E-02
103	GO:0022891: substrate-specific transmembrane transporter activity	2.25E-02
104	GO:0047134: protein-disulfide reductase activity	2.53E-02
105	GO:0004812: aminoacyl-tRNA ligase activity	2.53E-02
106	GO:0001085: RNA polymerase II transcription factor binding	2.82E-02
107	GO:0016853: isomerase activity	2.97E-02
108	GO:0004791: thioredoxin-disulfide reductase activity	2.97E-02
109	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.60E-02
110	GO:0051015: actin filament binding	3.60E-02
111	GO:0003684: damaged DNA binding	3.76E-02
112	GO:0008237: metallopeptidase activity	3.92E-02
113	GO:0005200: structural constituent of cytoskeleton	3.92E-02
114	GO:0005515: protein binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009507: chloroplast	2.04E-106
5	GO:0009570: chloroplast stroma	9.58E-83
6	GO:0009941: chloroplast envelope	5.40E-71
7	GO:0009535: chloroplast thylakoid membrane	7.80E-49
8	GO:0009579: thylakoid	8.12E-48
9	GO:0009534: chloroplast thylakoid	1.00E-47
10	GO:0009543: chloroplast thylakoid lumen	3.83E-21
11	GO:0031977: thylakoid lumen	1.93E-19
12	GO:0005840: ribosome	5.77E-17
13	GO:0010319: stromule	5.46E-11
14	GO:0010287: plastoglobule	3.54E-09
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.01E-07
16	GO:0009706: chloroplast inner membrane	7.11E-07
17	GO:0009508: plastid chromosome	1.84E-06
18	GO:0009536: plastid	2.87E-06
19	GO:0009295: nucleoid	2.92E-06
20	GO:0009533: chloroplast stromal thylakoid	6.48E-06
21	GO:0010007: magnesium chelatase complex	1.71E-05
22	GO:0016020: membrane	1.97E-05
23	GO:0048046: apoplast	2.44E-05
24	GO:0005960: glycine cleavage complex	3.81E-05
25	GO:0000311: plastid large ribosomal subunit	5.40E-05
26	GO:0030095: chloroplast photosystem II	8.01E-05
27	GO:0009654: photosystem II oxygen evolving complex	1.52E-04
28	GO:0009547: plastid ribosome	3.27E-04
29	GO:0009538: photosystem I reaction center	3.44E-04
30	GO:0009501: amyloplast	3.44E-04
31	GO:0022626: cytosolic ribosome	4.03E-04
32	GO:0009523: photosystem II	4.19E-04
33	GO:0019898: extrinsic component of membrane	4.19E-04
34	GO:0030093: chloroplast photosystem I	7.13E-04
35	GO:0015934: large ribosomal subunit	1.22E-03
36	GO:0015935: small ribosomal subunit	1.95E-03
37	GO:0009517: PSII associated light-harvesting complex II	2.23E-03
38	GO:0009512: cytochrome b6f complex	2.84E-03
39	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.51E-03
40	GO:0009840: chloroplastic endopeptidase Clp complex	4.23E-03
41	GO:0031969: chloroplast membrane	4.77E-03
42	GO:0022625: cytosolic large ribosomal subunit	5.15E-03
43	GO:0042644: chloroplast nucleoid	7.54E-03
44	GO:0045298: tubulin complex	7.54E-03
45	GO:0005763: mitochondrial small ribosomal subunit	7.54E-03
46	GO:0000312: plastid small ribosomal subunit	1.37E-02
47	GO:0030076: light-harvesting complex	1.49E-02
48	GO:0043234: protein complex	1.61E-02
49	GO:0042651: thylakoid membrane	1.86E-02
50	GO:0009532: plastid stroma	1.99E-02
51	GO:0015629: actin cytoskeleton	2.25E-02
52	GO:0009522: photosystem I	2.97E-02
53	GO:0005759: mitochondrial matrix	3.69E-02
54	GO:0030529: intracellular ribonucleoprotein complex	4.26E-02
55	GO:0005667: transcription factor complex	4.61E-02