Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G26890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009583: detection of light stimulus0.00E+00
2GO:0007037: vacuolar phosphate transport0.00E+00
3GO:0071000: response to magnetism0.00E+00
4GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
5GO:0010343: singlet oxygen-mediated programmed cell death3.07E-08
6GO:0071266: 'de novo' L-methionine biosynthetic process1.97E-05
7GO:0019346: transsulfuration1.97E-05
8GO:0019343: cysteine biosynthetic process via cystathionine1.97E-05
9GO:0072387: flavin adenine dinucleotide metabolic process1.97E-05
10GO:0048438: floral whorl development1.97E-05
11GO:1901529: positive regulation of anion channel activity5.10E-05
12GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole5.10E-05
13GO:0080005: photosystem stoichiometry adjustment5.10E-05
14GO:0010617: circadian regulation of calcium ion oscillation5.10E-05
15GO:0099402: plant organ development5.10E-05
16GO:1901672: positive regulation of systemic acquired resistance9.05E-05
17GO:1902448: positive regulation of shade avoidance9.05E-05
18GO:0090307: mitotic spindle assembly1.36E-04
19GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.36E-04
20GO:1901332: negative regulation of lateral root development1.36E-04
21GO:0031122: cytoplasmic microtubule organization1.86E-04
22GO:1902347: response to strigolactone1.86E-04
23GO:0031935: regulation of chromatin silencing1.86E-04
24GO:0009765: photosynthesis, light harvesting1.86E-04
25GO:0009910: negative regulation of flower development2.16E-04
26GO:0016120: carotene biosynthetic process2.40E-04
27GO:0000304: response to singlet oxygen2.40E-04
28GO:0010117: photoprotection2.40E-04
29GO:0046283: anthocyanin-containing compound metabolic process2.40E-04
30GO:0016123: xanthophyll biosynthetic process2.40E-04
31GO:1901371: regulation of leaf morphogenesis2.97E-04
32GO:0000741: karyogamy2.97E-04
33GO:0060918: auxin transport2.97E-04
34GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.57E-04
35GO:0010076: maintenance of floral meristem identity3.57E-04
36GO:0010310: regulation of hydrogen peroxide metabolic process3.57E-04
37GO:0080111: DNA demethylation4.19E-04
38GO:0051510: regulation of unidimensional cell growth4.19E-04
39GO:1900056: negative regulation of leaf senescence4.19E-04
40GO:0009704: de-etiolation4.84E-04
41GO:0010380: regulation of chlorophyll biosynthetic process6.90E-04
42GO:1900426: positive regulation of defense response to bacterium6.90E-04
43GO:0009638: phototropism6.90E-04
44GO:0010582: floral meristem determinacy9.12E-04
45GO:0009785: blue light signaling pathway9.90E-04
46GO:0010075: regulation of meristem growth9.90E-04
47GO:0009767: photosynthetic electron transport chain9.90E-04
48GO:0009451: RNA modification9.98E-04
49GO:0019253: reductive pentose-phosphate cycle1.07E-03
50GO:0009266: response to temperature stimulus1.07E-03
51GO:2000377: regulation of reactive oxygen species metabolic process1.32E-03
52GO:0009658: chloroplast organization1.48E-03
53GO:0006306: DNA methylation1.50E-03
54GO:0006284: base-excision repair1.78E-03
55GO:0016117: carotenoid biosynthetic process1.88E-03
56GO:0046777: protein autophosphorylation1.95E-03
57GO:0010051: xylem and phloem pattern formation1.98E-03
58GO:0010087: phloem or xylem histogenesis1.98E-03
59GO:0010118: stomatal movement1.98E-03
60GO:0010197: polar nucleus fusion2.08E-03
61GO:0042752: regulation of circadian rhythm2.18E-03
62GO:0009646: response to absence of light2.18E-03
63GO:0018298: protein-chromophore linkage3.68E-03
64GO:0010218: response to far red light3.93E-03
65GO:0009793: embryo development ending in seed dormancy3.93E-03
66GO:0009637: response to blue light4.32E-03
67GO:0006897: endocytosis4.86E-03
68GO:0009640: photomorphogenesis5.13E-03
69GO:0010114: response to red light5.13E-03
70GO:0009644: response to high light intensity5.42E-03
71GO:0009965: leaf morphogenesis5.56E-03
72GO:0000165: MAPK cascade5.86E-03
73GO:0006417: regulation of translation6.76E-03
74GO:0006096: glycolytic process7.08E-03
75GO:0007623: circadian rhythm1.18E-02
76GO:0010468: regulation of gene expression1.34E-02
77GO:0045944: positive regulation of transcription from RNA polymerase II promoter1.52E-02
78GO:0045892: negative regulation of transcription, DNA-templated2.15E-02
79GO:0009751: response to salicylic acid2.45E-02
80GO:0006281: DNA repair2.47E-02
81GO:0055114: oxidation-reduction process3.27E-02
82GO:0009416: response to light stimulus3.72E-02
83GO:0045893: positive regulation of transcription, DNA-templated4.11E-02
84GO:0055085: transmembrane transport4.41E-02
85GO:0006457: protein folding4.48E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0004121: cystathionine beta-lyase activity1.97E-05
3GO:0004123: cystathionine gamma-lyase activity1.97E-05
4GO:0004618: phosphoglycerate kinase activity5.10E-05
5GO:0004848: ureidoglycolate hydrolase activity9.05E-05
6GO:0003962: cystathionine gamma-synthase activity9.05E-05
7GO:0000900: translation repressor activity, nucleic acid binding9.05E-05
8GO:0009882: blue light photoreceptor activity1.36E-04
9GO:0043015: gamma-tubulin binding1.86E-04
10GO:0051011: microtubule minus-end binding2.40E-04
11GO:0015631: tubulin binding3.57E-04
12GO:0071949: FAD binding6.19E-04
13GO:0001055: RNA polymerase II activity6.90E-04
14GO:0001054: RNA polymerase I activity8.37E-04
15GO:0001056: RNA polymerase III activity9.12E-04
16GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.07E-03
17GO:0004176: ATP-dependent peptidase activity1.50E-03
18GO:0048038: quinone binding2.40E-03
19GO:0008237: metallopeptidase activity2.84E-03
20GO:0005200: structural constituent of cytoskeleton2.84E-03
21GO:0004519: endonuclease activity2.90E-03
22GO:0005096: GTPase activator activity3.80E-03
23GO:0004222: metalloendopeptidase activity3.93E-03
24GO:0004712: protein serine/threonine/tyrosine kinase activity4.58E-03
25GO:0035091: phosphatidylinositol binding5.42E-03
26GO:0003899: DNA-directed 5'-3' RNA polymerase activity6.31E-03
27GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen9.60E-03
28GO:0030170: pyridoxal phosphate binding1.01E-02
29GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.03E-02
30GO:0016491: oxidoreductase activity1.25E-02
31GO:0008194: UDP-glycosyltransferase activity1.28E-02
32GO:0042802: identical protein binding1.40E-02
33GO:0008168: methyltransferase activity1.57E-02
34GO:0003723: RNA binding1.84E-02
35GO:0042803: protein homodimerization activity2.20E-02
36GO:0016887: ATPase activity3.38E-02
37GO:0003677: DNA binding3.45E-02
38GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.54E-02
39GO:0016301: kinase activity4.77E-02
RankGO TermAdjusted P value
1GO:0008274: gamma-tubulin ring complex5.10E-05
2GO:0016605: PML body9.05E-05
3GO:0000923: equatorial microtubule organizing center1.36E-04
4GO:0030140: trans-Golgi network transport vesicle2.97E-04
5GO:0000123: histone acetyltransferase complex4.19E-04
6GO:0009507: chloroplast5.53E-04
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.19E-04
8GO:0000922: spindle pole6.19E-04
9GO:0016604: nuclear body6.90E-04
10GO:0000419: DNA-directed RNA polymerase V complex1.23E-03
11GO:0042651: thylakoid membrane1.41E-03
12GO:0043231: intracellular membrane-bounded organelle2.94E-03
13GO:0031966: mitochondrial membrane6.00E-03
14GO:0009705: plant-type vacuole membrane1.18E-02
15GO:0046658: anchored component of plasma membrane1.44E-02
16GO:0009570: chloroplast stroma1.48E-02
17GO:0005874: microtubule1.83E-02
18GO:0031969: chloroplast membrane1.87E-02
19GO:0009535: chloroplast thylakoid membrane2.14E-02
20GO:0009506: plasmodesma3.56E-02
21GO:0009579: thylakoid4.23E-02
22GO:0009534: chloroplast thylakoid4.26E-02
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Gene type



Gene DE type