co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G26720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032928: regulation of superoxide anion generation	0.00E+00
2	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
3	GO:0009661: chromoplast organization	0.00E+00
4	GO:0005997: xylulose metabolic process	0.00E+00
5	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:0019685: photosynthesis, dark reaction	0.00E+00
8	GO:0010343: singlet oxygen-mediated programmed cell death	0.00E+00
9	GO:0015813: L-glutamate transport	0.00E+00
10	GO:0009583: detection of light stimulus	0.00E+00
11	GO:0046294: formaldehyde catabolic process	0.00E+00
12	GO:0010477: response to sulfur dioxide	0.00E+00
13	GO:0071000: response to magnetism	0.00E+00
14	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
15	GO:0080005: photosystem stoichiometry adjustment	1.93E-06
16	GO:2001141: regulation of RNA biosynthetic process	1.63E-05
17	GO:0009658: chloroplast organization	2.45E-05
18	GO:0010117: photoprotection	4.82E-05
19	GO:0000304: response to singlet oxygen	4.82E-05
20	GO:0010190: cytochrome b6f complex assembly	7.11E-05
21	GO:0010118: stomatal movement	1.20E-04
22	GO:0006508: proteolysis	1.69E-04
23	GO:0072387: flavin adenine dinucleotide metabolic process	2.02E-04
24	GO:0071461: cellular response to redox state	2.02E-04
25	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.02E-04
26	GO:0010362: negative regulation of anion channel activity by blue light	2.02E-04
27	GO:0071266: 'de novo' L-methionine biosynthetic process	2.02E-04
28	GO:0019343: cysteine biosynthetic process via cystathionine	2.02E-04
29	GO:0019346: transsulfuration	2.02E-04
30	GO:0071482: cellular response to light stimulus	2.08E-04
31	GO:0009638: phototropism	3.01E-04
32	GO:0006352: DNA-templated transcription, initiation	4.10E-04
33	GO:2000071: regulation of defense response by callose deposition	4.52E-04
34	GO:0099402: plant organ development	4.52E-04
35	GO:0006996: organelle organization	4.52E-04
36	GO:1904143: positive regulation of carotenoid biosynthetic process	4.52E-04
37	GO:0016122: xanthophyll metabolic process	4.52E-04
38	GO:1901529: positive regulation of anion channel activity	4.52E-04
39	GO:2000030: regulation of response to red or far red light	4.52E-04
40	GO:0010617: circadian regulation of calcium ion oscillation	4.52E-04
41	GO:0006790: sulfur compound metabolic process	4.70E-04
42	GO:0009150: purine ribonucleotide metabolic process	7.36E-04
43	GO:0015940: pantothenate biosynthetic process	7.36E-04
44	GO:0006696: ergosterol biosynthetic process	7.36E-04
45	GO:0071836: nectar secretion	7.36E-04
46	GO:1902448: positive regulation of shade avoidance	7.36E-04
47	GO:0006013: mannose metabolic process	7.36E-04
48	GO:0008652: cellular amino acid biosynthetic process	7.36E-04
49	GO:0044210: 'de novo' CTP biosynthetic process	7.36E-04
50	GO:1901672: positive regulation of systemic acquired resistance	7.36E-04
51	GO:1901332: negative regulation of lateral root development	1.05E-03
52	GO:0050482: arachidonic acid secretion	1.05E-03
53	GO:0051289: protein homotetramerization	1.05E-03
54	GO:0009067: aspartate family amino acid biosynthetic process	1.05E-03
55	GO:0015729: oxaloacetate transport	1.05E-03
56	GO:0046653: tetrahydrofolate metabolic process	1.05E-03
57	GO:0033014: tetrapyrrole biosynthetic process	1.05E-03
58	GO:0016226: iron-sulfur cluster assembly	1.08E-03
59	GO:1902347: response to strigolactone	1.40E-03
60	GO:0009902: chloroplast relocation	1.40E-03
61	GO:0034613: cellular protein localization	1.40E-03
62	GO:0010021: amylopectin biosynthetic process	1.40E-03
63	GO:0019676: ammonia assimilation cycle	1.40E-03
64	GO:0015743: malate transport	1.40E-03
65	GO:0015994: chlorophyll metabolic process	1.40E-03
66	GO:0006552: leucine catabolic process	1.40E-03
67	GO:0046283: anthocyanin-containing compound metabolic process	1.78E-03
68	GO:0071423: malate transmembrane transport	1.78E-03
69	GO:0016120: carotene biosynthetic process	1.78E-03
70	GO:0019252: starch biosynthetic process	1.85E-03
71	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.19E-03
72	GO:0033365: protein localization to organelle	2.19E-03
73	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.19E-03
74	GO:1901371: regulation of leaf morphogenesis	2.19E-03
75	GO:0060918: auxin transport	2.19E-03
76	GO:0034314: Arp2/3 complex-mediated actin nucleation	2.19E-03
77	GO:0055114: oxidation-reduction process	2.53E-03
78	GO:0010016: shoot system morphogenesis	2.63E-03
79	GO:0010019: chloroplast-nucleus signaling pathway	2.63E-03
80	GO:0010310: regulation of hydrogen peroxide metabolic process	2.63E-03
81	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.63E-03
82	GO:0051510: regulation of unidimensional cell growth	3.09E-03
83	GO:0010038: response to metal ion	3.09E-03
84	GO:0015693: magnesium ion transport	3.09E-03
85	GO:0050790: regulation of catalytic activity	3.09E-03
86	GO:1900056: negative regulation of leaf senescence	3.09E-03
87	GO:0009396: folic acid-containing compound biosynthetic process	3.09E-03
88	GO:0015995: chlorophyll biosynthetic process	3.35E-03
89	GO:0009704: de-etiolation	3.59E-03
90	GO:0050821: protein stabilization	3.59E-03
91	GO:0009231: riboflavin biosynthetic process	3.59E-03
92	GO:0006102: isocitrate metabolic process	3.59E-03
93	GO:0006644: phospholipid metabolic process	3.59E-03
94	GO:0048564: photosystem I assembly	3.59E-03
95	GO:0005978: glycogen biosynthetic process	3.59E-03
96	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.59E-03
97	GO:0018298: protein-chromophore linkage	3.71E-03
98	GO:0044030: regulation of DNA methylation	4.10E-03
99	GO:0007568: aging	4.28E-03
100	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.65E-03
101	GO:0009637: response to blue light	4.69E-03
102	GO:1900426: positive regulation of defense response to bacterium	5.21E-03
103	GO:0035999: tetrahydrofolate interconversion	5.21E-03
104	GO:0010380: regulation of chlorophyll biosynthetic process	5.21E-03
105	GO:0009688: abscisic acid biosynthetic process	5.80E-03
106	GO:0045036: protein targeting to chloroplast	5.80E-03
107	GO:0006782: protoporphyrinogen IX biosynthetic process	5.80E-03
108	GO:0006879: cellular iron ion homeostasis	6.41E-03
109	GO:0009682: induced systemic resistance	6.41E-03
110	GO:0043085: positive regulation of catalytic activity	6.41E-03
111	GO:0045037: protein import into chloroplast stroma	7.04E-03
112	GO:0010075: regulation of meristem growth	7.70E-03
113	GO:0009767: photosynthetic electron transport chain	7.70E-03
114	GO:0005986: sucrose biosynthetic process	7.70E-03
115	GO:0009785: blue light signaling pathway	7.70E-03
116	GO:0007015: actin filament organization	8.37E-03
117	GO:0010207: photosystem II assembly	8.37E-03
118	GO:0051603: proteolysis involved in cellular protein catabolic process	8.43E-03
119	GO:0046777: protein autophosphorylation	8.92E-03
120	GO:0090351: seedling development	9.07E-03
121	GO:0007033: vacuole organization	9.07E-03
122	GO:0000162: tryptophan biosynthetic process	9.79E-03
123	GO:2000377: regulation of reactive oxygen species metabolic process	1.05E-02
124	GO:0006487: protein N-linked glycosylation	1.05E-02
125	GO:0006366: transcription from RNA polymerase II promoter	1.21E-02
126	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.29E-02
127	GO:0006730: one-carbon metabolic process	1.29E-02
128	GO:0009306: protein secretion	1.45E-02
129	GO:0016117: carotenoid biosynthetic process	1.54E-02
130	GO:0010051: xylem and phloem pattern formation	1.62E-02
131	GO:0010087: phloem or xylem histogenesis	1.62E-02
132	GO:0042335: cuticle development	1.62E-02
133	GO:0006662: glycerol ether metabolic process	1.71E-02
134	GO:0006814: sodium ion transport	1.80E-02
135	GO:0042752: regulation of circadian rhythm	1.80E-02
136	GO:0009646: response to absence of light	1.80E-02
137	GO:0009851: auxin biosynthetic process	1.89E-02
138	GO:0009791: post-embryonic development	1.89E-02
139	GO:0002229: defense response to oomycetes	1.99E-02
140	GO:0007623: circadian rhythm	2.01E-02
141	GO:0030163: protein catabolic process	2.18E-02
142	GO:0006904: vesicle docking involved in exocytosis	2.38E-02
143	GO:0016579: protein deubiquitination	2.48E-02
144	GO:0010027: thylakoid membrane organization	2.58E-02
145	GO:0016126: sterol biosynthetic process	2.58E-02
146	GO:0009816: defense response to bacterium, incompatible interaction	2.69E-02
147	GO:0042128: nitrate assimilation	2.80E-02
148	GO:0006950: response to stress	2.90E-02
149	GO:0000160: phosphorelay signal transduction system	3.23E-02
150	GO:0010218: response to far red light	3.35E-02
151	GO:0006811: ion transport	3.35E-02
152	GO:0010043: response to zinc ion	3.46E-02
153	GO:0009910: negative regulation of flower development	3.46E-02
154	GO:0009853: photorespiration	3.69E-02
155	GO:0009867: jasmonic acid mediated signaling pathway	3.69E-02
156	GO:0034599: cellular response to oxidative stress	3.81E-02
157	GO:0006099: tricarboxylic acid cycle	3.81E-02
158	GO:0006897: endocytosis	4.18E-02
159	GO:0009640: photomorphogenesis	4.42E-02
160	GO:0010114: response to red light	4.42E-02
161	GO:0009644: response to high light intensity	4.68E-02
162	GO:0009965: leaf morphogenesis	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0008482: sulfite oxidase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
4	GO:0070009: serine-type aminopeptidase activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0004180: carboxypeptidase activity	7.09E-06
9	GO:0004848: ureidoglycolate hydrolase activity	7.09E-06
10	GO:0009882: blue light photoreceptor activity	1.63E-05
11	GO:0001053: plastid sigma factor activity	3.00E-05
12	GO:0016987: sigma factor activity	3.00E-05
13	GO:0030941: chloroplast targeting sequence binding	2.02E-04
14	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.02E-04
15	GO:0004485: methylcrotonoyl-CoA carboxylase activity	2.02E-04
16	GO:0004123: cystathionine gamma-lyase activity	2.02E-04
17	GO:0046906: tetrapyrrole binding	2.02E-04
18	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.02E-04
19	GO:0004856: xylulokinase activity	2.02E-04
20	GO:0004121: cystathionine beta-lyase activity	2.02E-04
21	GO:0016783: sulfurtransferase activity	2.02E-04
22	GO:0051996: squalene synthase activity	2.02E-04
23	GO:0016491: oxidoreductase activity	2.17E-04
24	GO:0071949: FAD binding	2.53E-04
25	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.52E-04
26	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.52E-04
27	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.52E-04
28	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.52E-04
29	GO:0033201: alpha-1,4-glucan synthase activity	4.52E-04
30	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.52E-04
31	GO:0004109: coproporphyrinogen oxidase activity	4.52E-04
32	GO:0015929: hexosaminidase activity	4.52E-04
33	GO:0004412: homoserine dehydrogenase activity	4.52E-04
34	GO:0004563: beta-N-acetylhexosaminidase activity	4.52E-04
35	GO:0004046: aminoacylase activity	4.52E-04
36	GO:0015367: oxoglutarate:malate antiporter activity	4.52E-04
37	GO:0004075: biotin carboxylase activity	7.36E-04
38	GO:0046524: sucrose-phosphate synthase activity	7.36E-04
39	GO:0004373: glycogen (starch) synthase activity	7.36E-04
40	GO:0003913: DNA photolyase activity	7.36E-04
41	GO:0032947: protein complex scaffold	7.36E-04
42	GO:0004557: alpha-galactosidase activity	7.36E-04
43	GO:0003962: cystathionine gamma-synthase activity	7.36E-04
44	GO:0003935: GTP cyclohydrolase II activity	7.36E-04
45	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.36E-04
46	GO:0004176: ATP-dependent peptidase activity	9.94E-04
47	GO:0004792: thiosulfate sulfurtransferase activity	1.05E-03
48	GO:0003883: CTP synthase activity	1.05E-03
49	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.05E-03
50	GO:0047627: adenylylsulfatase activity	1.05E-03
51	GO:0000254: C-4 methylsterol oxidase activity	1.05E-03
52	GO:0004416: hydroxyacylglutathione hydrolase activity	1.05E-03
53	GO:0015131: oxaloacetate transmembrane transporter activity	1.05E-03
54	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.40E-03
55	GO:0004834: tryptophan synthase activity	1.40E-03
56	GO:0051861: glycolipid binding	1.40E-03
57	GO:0005313: L-glutamate transmembrane transporter activity	1.40E-03
58	GO:0009011: starch synthase activity	1.40E-03
59	GO:0004623: phospholipase A2 activity	1.78E-03
60	GO:0030151: molybdenum ion binding	1.78E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.78E-03
62	GO:0048038: quinone binding	1.98E-03
63	GO:0000293: ferric-chelate reductase activity	2.19E-03
64	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.19E-03
65	GO:0008237: metallopeptidase activity	2.54E-03
66	GO:0004559: alpha-mannosidase activity	2.63E-03
67	GO:0016157: sucrose synthase activity	2.63E-03
68	GO:0015140: malate transmembrane transporter activity	3.09E-03
69	GO:0019899: enzyme binding	3.09E-03
70	GO:0008236: serine-type peptidase activity	3.52E-03
71	GO:0004222: metalloendopeptidase activity	4.08E-03
72	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.65E-03
73	GO:0004177: aminopeptidase activity	6.41E-03
74	GO:0015095: magnesium ion transmembrane transporter activity	7.70E-03
75	GO:0031072: heat shock protein binding	7.70E-03
76	GO:0000155: phosphorelay sensor kinase activity	7.70E-03
77	GO:0015266: protein channel activity	7.70E-03
78	GO:0008233: peptidase activity	8.01E-03
79	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.14E-03
80	GO:0051536: iron-sulfur cluster binding	1.05E-02
81	GO:0005528: FK506 binding	1.05E-02
82	GO:0001046: core promoter sequence-specific DNA binding	1.05E-02
83	GO:0008408: 3'-5' exonuclease activity	1.21E-02
84	GO:0047134: protein-disulfide reductase activity	1.54E-02
85	GO:0008080: N-acetyltransferase activity	1.71E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	1.80E-02
87	GO:0010181: FMN binding	1.80E-02
88	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.99E-02
89	GO:0004197: cysteine-type endopeptidase activity	2.08E-02
90	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.18E-02
91	GO:0051015: actin filament binding	2.18E-02
92	GO:0042802: identical protein binding	2.56E-02
93	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.12E-02
94	GO:0005096: GTPase activator activity	3.23E-02
95	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.46E-02
96	GO:0050897: cobalt ion binding	3.46E-02
97	GO:0004185: serine-type carboxypeptidase activity	4.42E-02
98	GO:0035091: phosphatidylinositol binding	4.68E-02
99	GO:0005198: structural molecule activity	4.80E-02
100	GO:0042803: protein homodimerization activity	4.82E-02
101	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.47E-23
2	GO:0031969: chloroplast membrane	2.77E-07
3	GO:0009535: chloroplast thylakoid membrane	1.07E-05
4	GO:0031972: chloroplast intermembrane space	2.02E-04
5	GO:0009941: chloroplast envelope	6.11E-04
6	GO:0009536: plastid	7.04E-04
7	GO:0016605: PML body	7.36E-04
8	GO:0042651: thylakoid membrane	9.08E-04
9	GO:0009527: plastid outer membrane	1.40E-03
10	GO:0009517: PSII associated light-harvesting complex II	1.40E-03
11	GO:0009706: chloroplast inner membrane	1.79E-03
12	GO:0030140: trans-Golgi network transport vesicle	2.19E-03
13	GO:0005773: vacuole	2.37E-03
14	GO:0005885: Arp2/3 protein complex	2.63E-03
15	GO:0031359: integral component of chloroplast outer membrane	3.09E-03
16	GO:0009501: amyloplast	3.59E-03
17	GO:0009707: chloroplast outer membrane	3.71E-03
18	GO:0009570: chloroplast stroma	4.08E-03
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.65E-03
20	GO:0016604: nuclear body	5.21E-03
21	GO:0005829: cytosol	6.46E-03
22	GO:0005764: lysosome	8.37E-03
23	GO:0005777: peroxisome	8.74E-03
24	GO:0009534: chloroplast thylakoid	9.44E-03
25	GO:0005875: microtubule associated complex	9.79E-03
26	GO:0043234: protein complex	9.79E-03
27	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.45E-02
28	GO:0009505: plant-type cell wall	2.87E-02
29	GO:0031902: late endosome membrane	4.18E-02
30	GO:0031977: thylakoid lumen	4.18E-02