Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G26570

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033317: pantothenate biosynthetic process from valine0.00E+00
2GO:0009583: detection of light stimulus0.00E+00
3GO:0090470: shoot organ boundary specification0.00E+00
4GO:0046294: formaldehyde catabolic process0.00E+00
5GO:0010477: response to sulfur dioxide0.00E+00
6GO:0071000: response to magnetism0.00E+00
7GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
8GO:0009661: chromoplast organization0.00E+00
9GO:0009902: chloroplast relocation1.42E-07
10GO:0010343: singlet oxygen-mediated programmed cell death1.85E-06
11GO:0055114: oxidation-reduction process2.17E-05
12GO:0009658: chloroplast organization2.24E-05
13GO:0016120: carotene biosynthetic process4.65E-05
14GO:0010190: cytochrome b6f complex assembly6.86E-05
15GO:0009903: chloroplast avoidance movement9.52E-05
16GO:0006430: lysyl-tRNA aminoacylation1.98E-04
17GO:0080065: 4-alpha-methyl-delta7-sterol oxidation1.98E-04
18GO:0010362: negative regulation of anion channel activity by blue light1.98E-04
19GO:1902265: abscisic acid homeostasis1.98E-04
20GO:0072387: flavin adenine dinucleotide metabolic process1.98E-04
21GO:0071461: cellular response to redox state1.98E-04
22GO:0009638: phototropism2.92E-04
23GO:0015995: chlorophyll biosynthetic process3.58E-04
24GO:0010275: NAD(P)H dehydrogenase complex assembly4.43E-04
25GO:1901529: positive regulation of anion channel activity4.43E-04
26GO:2000030: regulation of response to red or far red light4.43E-04
27GO:0006898: receptor-mediated endocytosis4.43E-04
28GO:0080005: photosystem stoichiometry adjustment4.43E-04
29GO:0010617: circadian regulation of calcium ion oscillation4.43E-04
30GO:0007154: cell communication4.43E-04
31GO:0099402: plant organ development4.43E-04
32GO:1904143: positive regulation of carotenoid biosynthetic process4.43E-04
33GO:0080183: response to photooxidative stress4.43E-04
34GO:0043100: pyrimidine nucleobase salvage4.43E-04
35GO:0006508: proteolysis5.30E-04
36GO:0009637: response to blue light5.54E-04
37GO:0031022: nuclear migration along microfilament7.22E-04
38GO:1902448: positive regulation of shade avoidance7.22E-04
39GO:0019419: sulfate reduction7.22E-04
40GO:1901672: positive regulation of systemic acquired resistance7.22E-04
41GO:1901562: response to paraquat7.22E-04
42GO:0015940: pantothenate biosynthetic process7.22E-04
43GO:0006696: ergosterol biosynthetic process7.22E-04
44GO:0044375: regulation of peroxisome size7.22E-04
45GO:0010371: regulation of gibberellin biosynthetic process1.03E-03
46GO:1901332: negative regulation of lateral root development1.03E-03
47GO:0050482: arachidonic acid secretion1.03E-03
48GO:2001141: regulation of RNA biosynthetic process1.03E-03
49GO:0016226: iron-sulfur cluster assembly1.05E-03
50GO:0016117: carotenoid biosynthetic process1.34E-03
51GO:0070534: protein K63-linked ubiquitination1.37E-03
52GO:0015994: chlorophyll metabolic process1.37E-03
53GO:0071585: detoxification of cadmium ion1.37E-03
54GO:0071483: cellular response to blue light1.37E-03
55GO:1902347: response to strigolactone1.37E-03
56GO:0034613: cellular protein localization1.37E-03
57GO:0010021: amylopectin biosynthetic process1.37E-03
58GO:0010118: stomatal movement1.45E-03
59GO:0000304: response to singlet oxygen1.74E-03
60GO:0010117: photoprotection1.74E-03
61GO:0046283: anthocyanin-containing compound metabolic process1.74E-03
62GO:0009904: chloroplast accumulation movement1.74E-03
63GO:0010236: plastoquinone biosynthetic process1.74E-03
64GO:0045038: protein import into chloroplast thylakoid membrane1.74E-03
65GO:0035434: copper ion transmembrane transport1.74E-03
66GO:0045454: cell redox homeostasis2.05E-03
67GO:0006555: methionine metabolic process2.14E-03
68GO:1901371: regulation of leaf morphogenesis2.14E-03
69GO:0060918: auxin transport2.14E-03
70GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione2.14E-03
71GO:0006301: postreplication repair2.14E-03
72GO:0010304: PSII associated light-harvesting complex II catabolic process2.14E-03
73GO:0009648: photoperiodism2.57E-03
74GO:0010310: regulation of hydrogen peroxide metabolic process2.57E-03
75GO:0019509: L-methionine salvage from methylthioadenosine2.57E-03
76GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.57E-03
77GO:0010189: vitamin E biosynthetic process2.57E-03
78GO:0010019: chloroplast-nucleus signaling pathway2.57E-03
79GO:0051510: regulation of unidimensional cell growth3.03E-03
80GO:0010038: response to metal ion3.03E-03
81GO:0050790: regulation of catalytic activity3.03E-03
82GO:0016559: peroxisome fission3.51E-03
83GO:0006644: phospholipid metabolic process3.51E-03
84GO:0048564: photosystem I assembly3.51E-03
85GO:0009787: regulation of abscisic acid-activated signaling pathway3.51E-03
86GO:0050821: protein stabilization3.51E-03
87GO:0009231: riboflavin biosynthetic process3.51E-03
88GO:0006102: isocitrate metabolic process3.51E-03
89GO:0018298: protein-chromophore linkage3.59E-03
90GO:0071482: cellular response to light stimulus4.02E-03
91GO:0015996: chlorophyll catabolic process4.02E-03
92GO:0009821: alkaloid biosynthetic process4.54E-03
93GO:1900426: positive regulation of defense response to bacterium5.10E-03
94GO:0009098: leucine biosynthetic process5.10E-03
95GO:0009970: cellular response to sulfate starvation5.67E-03
96GO:0006995: cellular response to nitrogen starvation5.67E-03
97GO:0000103: sulfate assimilation5.67E-03
98GO:0009640: photomorphogenesis5.85E-03
99GO:0008285: negative regulation of cell proliferation6.27E-03
100GO:0043085: positive regulation of catalytic activity6.27E-03
101GO:0006879: cellular iron ion homeostasis6.27E-03
102GO:0006352: DNA-templated transcription, initiation6.27E-03
103GO:0016485: protein processing6.27E-03
104GO:0009644: response to high light intensity6.33E-03
105GO:0006790: sulfur compound metabolic process6.89E-03
106GO:0035556: intracellular signal transduction7.33E-03
107GO:0010075: regulation of meristem growth7.52E-03
108GO:0009767: photosynthetic electron transport chain7.52E-03
109GO:0009785: blue light signaling pathway7.52E-03
110GO:0030048: actin filament-based movement7.52E-03
111GO:0051603: proteolysis involved in cellular protein catabolic process8.16E-03
112GO:0010207: photosystem II assembly8.19E-03
113GO:0007015: actin filament organization8.19E-03
114GO:0007031: peroxisome organization8.87E-03
115GO:0006071: glycerol metabolic process9.57E-03
116GO:0019344: cysteine biosynthetic process1.03E-02
117GO:0051017: actin filament bundle assembly1.03E-02
118GO:2000377: regulation of reactive oxygen species metabolic process1.03E-02
119GO:0008299: isoprenoid biosynthetic process1.10E-02
120GO:0006418: tRNA aminoacylation for protein translation1.10E-02
121GO:0010073: meristem maintenance1.10E-02
122GO:0006825: copper ion transport1.10E-02
123GO:0009693: ethylene biosynthetic process1.34E-02
124GO:0010227: floral organ abscission1.34E-02
125GO:0009058: biosynthetic process1.49E-02
126GO:0006520: cellular amino acid metabolic process1.67E-02
127GO:0006662: glycerol ether metabolic process1.67E-02
128GO:0010182: sugar mediated signaling pathway1.67E-02
129GO:0042752: regulation of circadian rhythm1.76E-02
130GO:0009646: response to absence of light1.76E-02
131GO:0019252: starch biosynthetic process1.85E-02
132GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.94E-02
133GO:0007623: circadian rhythm1.95E-02
134GO:0019761: glucosinolate biosynthetic process2.04E-02
135GO:0030163: protein catabolic process2.13E-02
136GO:0016126: sterol biosynthetic process2.53E-02
137GO:0010029: regulation of seed germination2.63E-02
138GO:0042128: nitrate assimilation2.73E-02
139GO:0010411: xyloglucan metabolic process2.84E-02
140GO:0006950: response to stress2.84E-02
141GO:0048481: plant ovule development3.05E-02
142GO:0008219: cell death3.05E-02
143GO:0000160: phosphorelay signal transduction system3.16E-02
144GO:0006811: ion transport3.27E-02
145GO:0010218: response to far red light3.27E-02
146GO:0007568: aging3.38E-02
147GO:0010043: response to zinc ion3.38E-02
148GO:0006099: tricarboxylic acid cycle3.73E-02
149GO:0034599: cellular response to oxidative stress3.73E-02
150GO:0046777: protein autophosphorylation3.99E-02
151GO:0042542: response to hydrogen peroxide4.20E-02
152GO:0015979: photosynthesis4.26E-02
153GO:0010114: response to red light4.32E-02
RankGO TermAdjusted P value
1GO:0004592: pantoate-beta-alanine ligase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0050342: tocopherol O-methyltransferase activity0.00E+00
4GO:0045436: lycopene beta cyclase activity0.00E+00
5GO:0050486: intramolecular transferase activity, transferring hydroxy groups0.00E+00
6GO:0015205: nucleobase transmembrane transporter activity0.00E+00
7GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
8GO:0018738: S-formylglutathione hydrolase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0008482: sulfite oxidase activity0.00E+00
11GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
12GO:0004180: carboxypeptidase activity6.80E-06
13GO:0004848: ureidoglycolate hydrolase activity6.80E-06
14GO:0016851: magnesium chelatase activity1.57E-05
15GO:0008106: alcohol dehydrogenase (NADP+) activity1.57E-05
16GO:0009882: blue light photoreceptor activity1.57E-05
17GO:0016491: oxidoreductase activity3.99E-05
18GO:0046906: tetrapyrrole binding1.98E-04
19GO:0004824: lysine-tRNA ligase activity1.98E-04
20GO:0051996: squalene synthase activity1.98E-04
21GO:0016783: sulfurtransferase activity1.98E-04
22GO:0004328: formamidase activity1.98E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.98E-04
24GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity1.98E-04
25GO:0016784: 3-mercaptopyruvate sulfurtransferase activity1.98E-04
26GO:0071949: FAD binding2.45E-04
27GO:0008236: serine-type peptidase activity3.83E-04
28GO:0033741: adenylyl-sulfate reductase (glutathione) activity4.43E-04
29GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity4.43E-04
30GO:0033201: alpha-1,4-glucan synthase activity4.43E-04
31GO:0050347: trans-octaprenyltranstransferase activity4.43E-04
32GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity4.43E-04
33GO:0009973: adenylyl-sulfate reductase activity4.43E-04
34GO:0004046: aminoacylase activity4.43E-04
35GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity4.43E-04
36GO:0004450: isocitrate dehydrogenase (NADP+) activity4.43E-04
37GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.43E-04
38GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity7.22E-04
39GO:0010277: chlorophyllide a oxygenase [overall] activity7.22E-04
40GO:0004373: glycogen (starch) synthase activity7.22E-04
41GO:0032947: protein complex scaffold7.22E-04
42GO:0004557: alpha-galactosidase activity7.22E-04
43GO:0003861: 3-isopropylmalate dehydratase activity7.22E-04
44GO:0003935: GTP cyclohydrolase II activity7.22E-04
45GO:0003955: NAD(P)H dehydrogenase (quinone) activity7.22E-04
46GO:0004096: catalase activity7.22E-04
47GO:0042802: identical protein binding8.42E-04
48GO:0004176: ATP-dependent peptidase activity9.64E-04
49GO:0000254: C-4 methylsterol oxidase activity1.03E-03
50GO:0004416: hydroxyacylglutathione hydrolase activity1.03E-03
51GO:0004792: thiosulfate sulfurtransferase activity1.03E-03
52GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.03E-03
53GO:0001053: plastid sigma factor activity1.37E-03
54GO:0016987: sigma factor activity1.37E-03
55GO:0009011: starch synthase activity1.37E-03
56GO:0004623: phospholipase A2 activity1.74E-03
57GO:0030151: molybdenum ion binding1.74E-03
58GO:0048038: quinone binding1.92E-03
59GO:0004709: MAP kinase kinase kinase activity2.14E-03
60GO:0000293: ferric-chelate reductase activity2.14E-03
61GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.14E-03
62GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.18E-03
63GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.36E-03
64GO:0008237: metallopeptidase activity2.46E-03
65GO:0016621: cinnamoyl-CoA reductase activity3.03E-03
66GO:0019899: enzyme binding3.03E-03
67GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity3.51E-03
68GO:0004222: metalloendopeptidase activity3.95E-03
69GO:0005375: copper ion transmembrane transporter activity4.02E-03
70GO:0008889: glycerophosphodiester phosphodiesterase activity4.54E-03
71GO:0016844: strictosidine synthase activity5.10E-03
72GO:0005506: iron ion binding5.48E-03
73GO:0016887: ATPase activity5.50E-03
74GO:0000155: phosphorelay sensor kinase activity7.52E-03
75GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.52E-03
76GO:0031072: heat shock protein binding7.52E-03
77GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.19E-03
78GO:0051536: iron-sulfur cluster binding1.03E-02
79GO:0015035: protein disulfide oxidoreductase activity1.16E-02
80GO:0004812: aminoacyl-tRNA ligase activity1.50E-02
81GO:0047134: protein-disulfide reductase activity1.50E-02
82GO:0008080: N-acetyltransferase activity1.67E-02
83GO:0004791: thioredoxin-disulfide reductase activity1.76E-02
84GO:0010181: FMN binding1.76E-02
85GO:0050662: coenzyme binding1.76E-02
86GO:0004197: cysteine-type endopeptidase activity2.04E-02
87GO:0016791: phosphatase activity2.23E-02
88GO:0008483: transaminase activity2.33E-02
89GO:0016413: O-acetyltransferase activity2.42E-02
90GO:0004721: phosphoprotein phosphatase activity2.84E-02
91GO:0030247: polysaccharide binding2.84E-02
92GO:0016788: hydrolase activity, acting on ester bonds3.08E-02
93GO:0030145: manganese ion binding3.38E-02
94GO:0050897: cobalt ion binding3.38E-02
95GO:0004672: protein kinase activity3.45E-02
96GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.61E-02
97GO:0004712: protein serine/threonine/tyrosine kinase activity3.84E-02
98GO:0061630: ubiquitin protein ligase activity3.93E-02
99GO:0051539: 4 iron, 4 sulfur cluster binding3.96E-02
100GO:0004185: serine-type carboxypeptidase activity4.32E-02
101GO:0051537: 2 iron, 2 sulfur cluster binding4.57E-02
102GO:0042803: protein homodimerization activity4.67E-02
103GO:0005198: structural molecule activity4.70E-02
104GO:0051287: NAD binding4.95E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast4.42E-20
2GO:0009535: chloroplast thylakoid membrane1.80E-07
3GO:0031969: chloroplast membrane3.97E-05
4GO:0005777: peroxisome1.01E-04
5GO:0009570: chloroplast stroma1.68E-04
6GO:0031972: chloroplast intermembrane space1.98E-04
7GO:0080085: signal recognition particle, chloroplast targeting4.43E-04
8GO:0010007: magnesium chelatase complex7.22E-04
9GO:0016605: PML body7.22E-04
10GO:0005773: vacuole7.85E-04
11GO:0042651: thylakoid membrane8.81E-04
12GO:0009532: plastid stroma9.64E-04
13GO:0031372: UBC13-MMS2 complex1.37E-03
14GO:0009526: plastid envelope1.37E-03
15GO:0010287: plastoglobule2.13E-03
16GO:0009840: chloroplastic endopeptidase Clp complex2.57E-03
17GO:0009501: amyloplast3.51E-03
18GO:0031982: vesicle3.51E-03
19GO:0009514: glyoxysome4.02E-03
20GO:0005779: integral component of peroxisomal membrane4.02E-03
21GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.02E-03
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.54E-03
23GO:0016604: nuclear body5.10E-03
24GO:0005884: actin filament6.27E-03
25GO:0009536: plastid8.04E-03
26GO:0005764: lysosome8.19E-03
27GO:0009706: chloroplast inner membrane1.12E-02
28GO:0005623: cell1.45E-02
29GO:0010319: stromule2.33E-02
30GO:0005778: peroxisomal membrane2.33E-02
31GO:0009941: chloroplast envelope3.12E-02
32GO:0005739: mitochondrion3.18E-02
33GO:0009534: chloroplast thylakoid3.36E-02
34GO:0031977: thylakoid lumen4.08E-02
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Gene type



Gene DE type