co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:2000605: positive regulation of secondary growth	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0030155: regulation of cell adhesion	0.00E+00
10	GO:0019323: pentose catabolic process	0.00E+00
11	GO:0032544: plastid translation	9.58E-13
12	GO:0006412: translation	3.13E-12
13	GO:0009735: response to cytokinin	2.60E-10
14	GO:0042254: ribosome biogenesis	3.10E-10
15	GO:0015979: photosynthesis	2.89E-08
16	GO:0019464: glycine decarboxylation via glycine cleavage system	1.51E-07
17	GO:0009409: response to cold	1.04E-06
18	GO:0009658: chloroplast organization	1.94E-06
19	GO:0042742: defense response to bacterium	1.67E-05
20	GO:0005983: starch catabolic process	1.78E-05
21	GO:0010027: thylakoid membrane organization	1.89E-05
22	GO:0010196: nonphotochemical quenching	1.31E-04
23	GO:0043489: RNA stabilization	2.02E-04
24	GO:0044262: cellular carbohydrate metabolic process	2.02E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	2.02E-04
26	GO:0000023: maltose metabolic process	2.02E-04
27	GO:0000025: maltose catabolic process	2.02E-04
28	GO:0010206: photosystem II repair	2.53E-04
29	GO:0009773: photosynthetic electron transport in photosystem I	4.10E-04
30	GO:0009817: defense response to fungus, incompatible interaction	4.26E-04
31	GO:0005976: polysaccharide metabolic process	4.52E-04
32	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.52E-04
33	GO:0010270: photosystem II oxygen evolving complex assembly	4.52E-04
34	GO:0034599: cellular response to oxidative stress	6.10E-04
35	GO:0006000: fructose metabolic process	7.36E-04
36	GO:0006518: peptide metabolic process	7.36E-04
37	GO:2001295: malonyl-CoA biosynthetic process	7.36E-04
38	GO:0048281: inflorescence morphogenesis	7.36E-04
39	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.05E-03
40	GO:0006165: nucleoside diphosphate phosphorylation	1.05E-03
41	GO:0006228: UTP biosynthetic process	1.05E-03
42	GO:0010148: transpiration	1.05E-03
43	GO:0010731: protein glutathionylation	1.05E-03
44	GO:0006424: glutamyl-tRNA aminoacylation	1.05E-03
45	GO:0051085: chaperone mediated protein folding requiring cofactor	1.05E-03
46	GO:0006241: CTP biosynthetic process	1.05E-03
47	GO:2000122: negative regulation of stomatal complex development	1.40E-03
48	GO:0044206: UMP salvage	1.40E-03
49	GO:0006546: glycine catabolic process	1.40E-03
50	GO:0010021: amylopectin biosynthetic process	1.40E-03
51	GO:0010037: response to carbon dioxide	1.40E-03
52	GO:0006808: regulation of nitrogen utilization	1.40E-03
53	GO:0015976: carbon utilization	1.40E-03
54	GO:0006109: regulation of carbohydrate metabolic process	1.40E-03
55	GO:0006183: GTP biosynthetic process	1.40E-03
56	GO:0045727: positive regulation of translation	1.40E-03
57	GO:0000413: protein peptidyl-prolyl isomerization	1.49E-03
58	GO:0006544: glycine metabolic process	1.78E-03
59	GO:0043097: pyrimidine nucleoside salvage	1.78E-03
60	GO:0032543: mitochondrial translation	1.78E-03
61	GO:0006461: protein complex assembly	1.78E-03
62	GO:0009435: NAD biosynthetic process	1.78E-03
63	GO:0019252: starch biosynthetic process	1.85E-03
64	GO:0000302: response to reactive oxygen species	1.98E-03
65	GO:0045454: cell redox homeostasis	2.16E-03
66	GO:0006828: manganese ion transport	2.19E-03
67	GO:0006206: pyrimidine nucleobase metabolic process	2.19E-03
68	GO:0006563: L-serine metabolic process	2.19E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.19E-03
70	GO:0000470: maturation of LSU-rRNA	2.19E-03
71	GO:0055114: oxidation-reduction process	2.53E-03
72	GO:0042026: protein refolding	2.63E-03
73	GO:1901259: chloroplast rRNA processing	2.63E-03
74	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.63E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	2.63E-03
76	GO:0010555: response to mannitol	2.63E-03
77	GO:0009955: adaxial/abaxial pattern specification	2.63E-03
78	GO:0070370: cellular heat acclimation	3.09E-03
79	GO:0010103: stomatal complex morphogenesis	3.09E-03
80	GO:0015995: chlorophyll biosynthetic process	3.35E-03
81	GO:0007623: circadian rhythm	3.58E-03
82	GO:0005978: glycogen biosynthetic process	3.59E-03
83	GO:0009642: response to light intensity	3.59E-03
84	GO:0030091: protein repair	3.59E-03
85	GO:0046686: response to cadmium ion	3.98E-03
86	GO:0001558: regulation of cell growth	4.10E-03
87	GO:0009657: plastid organization	4.10E-03
88	GO:0006002: fructose 6-phosphate metabolic process	4.10E-03
89	GO:0009631: cold acclimation	4.28E-03
90	GO:0006783: heme biosynthetic process	4.65E-03
91	GO:0009853: photorespiration	4.69E-03
92	GO:0042761: very long-chain fatty acid biosynthetic process	5.21E-03
93	GO:0005982: starch metabolic process	5.21E-03
94	GO:0035999: tetrahydrofolate interconversion	5.21E-03
95	GO:0006782: protoporphyrinogen IX biosynthetic process	5.80E-03
96	GO:0006979: response to oxidative stress	6.04E-03
97	GO:0009089: lysine biosynthetic process via diaminopimelate	6.41E-03
98	GO:0006415: translational termination	6.41E-03
99	GO:0043085: positive regulation of catalytic activity	6.41E-03
100	GO:0009750: response to fructose	6.41E-03
101	GO:0018119: peptidyl-cysteine S-nitrosylation	6.41E-03
102	GO:0016485: protein processing	6.41E-03
103	GO:0006816: calcium ion transport	6.41E-03
104	GO:0010102: lateral root morphogenesis	7.70E-03
105	GO:0006807: nitrogen compound metabolic process	7.70E-03
106	GO:0006094: gluconeogenesis	7.70E-03
107	GO:0009767: photosynthetic electron transport chain	7.70E-03
108	GO:0005986: sucrose biosynthetic process	7.70E-03
109	GO:0010020: chloroplast fission	8.37E-03
110	GO:0019253: reductive pentose-phosphate cycle	8.37E-03
111	GO:0010025: wax biosynthetic process	9.79E-03
112	GO:0000027: ribosomal large subunit assembly	1.05E-02
113	GO:0009944: polarity specification of adaxial/abaxial axis	1.05E-02
114	GO:0051017: actin filament bundle assembly	1.05E-02
115	GO:0006289: nucleotide-excision repair	1.05E-02
116	GO:0019344: cysteine biosynthetic process	1.05E-02
117	GO:0009116: nucleoside metabolic process	1.05E-02
118	GO:0006418: tRNA aminoacylation for protein translation	1.13E-02
119	GO:0051302: regulation of cell division	1.13E-02
120	GO:0016114: terpenoid biosynthetic process	1.21E-02
121	GO:0035428: hexose transmembrane transport	1.29E-02
122	GO:0007005: mitochondrion organization	1.29E-02
123	GO:0009411: response to UV	1.37E-02
124	GO:0001944: vasculature development	1.37E-02
125	GO:0006012: galactose metabolic process	1.37E-02
126	GO:0009306: protein secretion	1.45E-02
127	GO:0006508: proteolysis	1.49E-02
128	GO:0008152: metabolic process	1.52E-02
129	GO:0042744: hydrogen peroxide catabolic process	1.66E-02
130	GO:0009790: embryo development	1.70E-02
131	GO:0006662: glycerol ether metabolic process	1.71E-02
132	GO:0046323: glucose import	1.71E-02
133	GO:0015986: ATP synthesis coupled proton transport	1.80E-02
134	GO:0007018: microtubule-based movement	1.80E-02
135	GO:0032502: developmental process	2.08E-02
136	GO:0030163: protein catabolic process	2.18E-02
137	GO:0009627: systemic acquired resistance	2.80E-02
138	GO:0016311: dephosphorylation	3.01E-02
139	GO:0048481: plant ovule development	3.12E-02
140	GO:0008219: cell death	3.12E-02
141	GO:0009813: flavonoid biosynthetic process	3.23E-02
142	GO:0010119: regulation of stomatal movement	3.46E-02
143	GO:0006810: transport	3.61E-02
144	GO:0045087: innate immune response	3.69E-02
145	GO:0006457: protein folding	3.81E-02
146	GO:0080167: response to karrikin	3.86E-02
147	GO:0006839: mitochondrial transport	4.05E-02
148	GO:0006631: fatty acid metabolic process	4.18E-02
149	GO:0042542: response to hydrogen peroxide	4.30E-02
150	GO:0009965: leaf morphogenesis	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0051738: xanthophyll binding	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
8	GO:0019843: rRNA binding	3.48E-20
9	GO:0003735: structural constituent of ribosome	5.29E-15
10	GO:0008266: poly(U) RNA binding	5.20E-07
11	GO:0051920: peroxiredoxin activity	1.18E-06
12	GO:0016209: antioxidant activity	2.94E-06
13	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.63E-05
14	GO:0004130: cytochrome-c peroxidase activity	7.11E-05
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.10E-04
16	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.02E-04
17	GO:0004856: xylulokinase activity	2.02E-04
18	GO:0009496: plastoquinol--plastocyanin reductase activity	2.02E-04
19	GO:0004134: 4-alpha-glucanotransferase activity	2.02E-04
20	GO:0004853: uroporphyrinogen decarboxylase activity	2.02E-04
21	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.02E-04
22	GO:0019203: carbohydrate phosphatase activity	2.02E-04
23	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.02E-04
24	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.02E-04
25	GO:0018708: thiol S-methyltransferase activity	4.52E-04
26	GO:0008967: phosphoglycolate phosphatase activity	4.52E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.52E-04
28	GO:0004618: phosphoglycerate kinase activity	4.52E-04
29	GO:0010297: heteropolysaccharide binding	4.52E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	4.52E-04
31	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.52E-04
32	GO:0004750: ribulose-phosphate 3-epimerase activity	4.52E-04
33	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.52E-04
34	GO:0004222: metalloendopeptidase activity	4.84E-04
35	GO:0004373: glycogen (starch) synthase activity	7.36E-04
36	GO:0017150: tRNA dihydrouridine synthase activity	7.36E-04
37	GO:0002161: aminoacyl-tRNA editing activity	7.36E-04
38	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	7.36E-04
39	GO:0004148: dihydrolipoyl dehydrogenase activity	7.36E-04
40	GO:0005504: fatty acid binding	7.36E-04
41	GO:0004075: biotin carboxylase activity	7.36E-04
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.36E-04
43	GO:0030267: glyoxylate reductase (NADP) activity	7.36E-04
44	GO:0070402: NADPH binding	7.36E-04
45	GO:0004324: ferredoxin-NADP+ reductase activity	7.36E-04
46	GO:0005528: FK506 binding	8.26E-04
47	GO:0016149: translation release factor activity, codon specific	1.05E-03
48	GO:0004550: nucleoside diphosphate kinase activity	1.05E-03
49	GO:0043023: ribosomal large subunit binding	1.05E-03
50	GO:0004601: peroxidase activity	1.18E-03
51	GO:0019199: transmembrane receptor protein kinase activity	1.40E-03
52	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.40E-03
53	GO:0045430: chalcone isomerase activity	1.40E-03
54	GO:0009011: starch synthase activity	1.40E-03
55	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.40E-03
56	GO:0042277: peptide binding	1.40E-03
57	GO:0004845: uracil phosphoribosyltransferase activity	1.40E-03
58	GO:0050662: coenzyme binding	1.72E-03
59	GO:0004372: glycine hydroxymethyltransferase activity	1.78E-03
60	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.78E-03
61	GO:0003959: NADPH dehydrogenase activity	1.78E-03
62	GO:0003989: acetyl-CoA carboxylase activity	1.78E-03
63	GO:0016688: L-ascorbate peroxidase activity	2.19E-03
64	GO:2001070: starch binding	2.19E-03
65	GO:0004849: uridine kinase activity	2.63E-03
66	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.63E-03
67	GO:0004602: glutathione peroxidase activity	2.63E-03
68	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.63E-03
69	GO:0004252: serine-type endopeptidase activity	2.71E-03
70	GO:0008236: serine-type peptidase activity	3.52E-03
71	GO:0004034: aldose 1-epimerase activity	3.59E-03
72	GO:0015078: hydrogen ion transmembrane transporter activity	4.10E-03
73	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.65E-03
74	GO:0003747: translation release factor activity	4.65E-03
75	GO:0005384: manganese ion transmembrane transporter activity	5.21E-03
76	GO:0008047: enzyme activator activity	5.80E-03
77	GO:0015386: potassium:proton antiporter activity	6.41E-03
78	GO:0044183: protein binding involved in protein folding	6.41E-03
79	GO:0000049: tRNA binding	7.04E-03
80	GO:0004089: carbonate dehydratase activity	7.70E-03
81	GO:0015095: magnesium ion transmembrane transporter activity	7.70E-03
82	GO:0031072: heat shock protein binding	7.70E-03
83	GO:0016491: oxidoreductase activity	9.62E-03
84	GO:0004857: enzyme inhibitor activity	1.05E-02
85	GO:0015079: potassium ion transmembrane transporter activity	1.13E-02
86	GO:0051082: unfolded protein binding	1.16E-02
87	GO:0022891: substrate-specific transmembrane transporter activity	1.37E-02
88	GO:0047134: protein-disulfide reductase activity	1.54E-02
89	GO:0004812: aminoacyl-tRNA ligase activity	1.54E-02
90	GO:0005355: glucose transmembrane transporter activity	1.80E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	1.80E-02
92	GO:0016853: isomerase activity	1.80E-02
93	GO:0048038: quinone binding	1.99E-02
94	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.18E-02
95	GO:0051015: actin filament binding	2.18E-02
96	GO:0008237: metallopeptidase activity	2.38E-02
97	GO:0016168: chlorophyll binding	2.69E-02
98	GO:0030247: polysaccharide binding	2.90E-02
99	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.12E-02
100	GO:0003729: mRNA binding	3.68E-02
101	GO:0008233: peptidase activity	3.79E-02
102	GO:0004364: glutathione transferase activity	4.30E-02
103	GO:0051537: 2 iron, 2 sulfur cluster binding	4.68E-02
104	GO:0005198: structural molecule activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	3.25E-82
4	GO:0009570: chloroplast stroma	2.72E-67
5	GO:0009941: chloroplast envelope	3.27E-60
6	GO:0009579: thylakoid	2.78E-40
7	GO:0009534: chloroplast thylakoid	1.59E-38
8	GO:0009535: chloroplast thylakoid membrane	2.15E-32
9	GO:0005840: ribosome	2.53E-16
10	GO:0031977: thylakoid lumen	2.04E-12
11	GO:0010319: stromule	2.98E-12
12	GO:0009543: chloroplast thylakoid lumen	5.94E-12
13	GO:0010287: plastoglobule	4.40E-09
14	GO:0048046: apoplast	4.77E-07
15	GO:0016020: membrane	9.41E-07
16	GO:0009533: chloroplast stromal thylakoid	1.92E-06
17	GO:0005960: glycine cleavage complex	1.63E-05
18	GO:0031969: chloroplast membrane	4.32E-05
19	GO:0009538: photosystem I reaction center	1.67E-04
20	GO:0009536: plastid	1.78E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.02E-04
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.53E-04
23	GO:0009295: nucleoid	2.57E-04
24	GO:0009706: chloroplast inner membrane	2.59E-04
25	GO:0030093: chloroplast photosystem I	4.52E-04
26	GO:0009508: plastid chromosome	5.33E-04
27	GO:0030095: chloroplast photosystem II	6.01E-04
28	GO:0009517: PSII associated light-harvesting complex II	1.40E-03
29	GO:0022626: cytosolic ribosome	1.60E-03
30	GO:0022625: cytosolic large ribosomal subunit	1.77E-03
31	GO:0009512: cytochrome b6f complex	1.78E-03
32	GO:0009523: photosystem II	1.85E-03
33	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.19E-03
34	GO:0009840: chloroplastic endopeptidase Clp complex	2.63E-03
35	GO:0009501: amyloplast	3.59E-03
36	GO:0015934: large ribosomal subunit	4.28E-03
37	GO:0042644: chloroplast nucleoid	4.65E-03
38	GO:0005763: mitochondrial small ribosomal subunit	4.65E-03
39	GO:0000311: plastid large ribosomal subunit	7.04E-03
40	GO:0000312: plastid small ribosomal subunit	8.37E-03
41	GO:0009654: photosystem II oxygen evolving complex	1.13E-02
42	GO:0015935: small ribosomal subunit	1.21E-02
43	GO:0009532: plastid stroma	1.21E-02
44	GO:0015629: actin cytoskeleton	1.37E-02
45	GO:0005871: kinesin complex	1.54E-02
46	GO:0005759: mitochondrial matrix	1.83E-02
47	GO:0019898: extrinsic component of membrane	1.89E-02
48	GO:0030529: intracellular ribonucleoprotein complex	2.58E-02
49	GO:0005856: cytoskeleton	4.80E-02