co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006862: nucleotide transport	0.00E+00
2	GO:2001142: nicotinate transport	0.00E+00
3	GO:0045595: regulation of cell differentiation	0.00E+00
4	GO:0060416: response to growth hormone	0.00E+00
5	GO:0042353: fucose biosynthetic process	0.00E+00
6	GO:0010046: response to mycotoxin	0.00E+00
7	GO:0046967: cytosol to ER transport	0.00E+00
8	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
9	GO:0009268: response to pH	0.00E+00
10	GO:2001143: N-methylnicotinate transport	0.00E+00
11	GO:0046398: UDP-glucuronate metabolic process	0.00E+00
12	GO:0071289: cellular response to nickel ion	0.00E+00
13	GO:0052573: UDP-D-galactose metabolic process	0.00E+00
14	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
15	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
16	GO:0010200: response to chitin	8.81E-20
17	GO:0009611: response to wounding	2.97E-11
18	GO:0051865: protein autoubiquitination	4.01E-05
19	GO:0006952: defense response	4.83E-05
20	GO:0033014: tetrapyrrole biosynthetic process	6.46E-05
21	GO:0002679: respiratory burst involved in defense response	6.46E-05
22	GO:0006468: protein phosphorylation	9.17E-05
23	GO:0034440: lipid oxidation	1.13E-04
24	GO:0009873: ethylene-activated signaling pathway	1.49E-04
25	GO:0006470: protein dephosphorylation	2.01E-04
26	GO:0009695: jasmonic acid biosynthetic process	2.84E-04
27	GO:0031408: oxylipin biosynthetic process	3.23E-04
28	GO:0080086: stamen filament development	3.33E-04
29	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.30E-04
30	GO:0006955: immune response	4.30E-04
31	GO:0051180: vitamin transport	4.43E-04
32	GO:0007229: integrin-mediated signaling pathway	4.43E-04
33	GO:0030974: thiamine pyrophosphate transport	4.43E-04
34	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	4.43E-04
35	GO:0050691: regulation of defense response to virus by host	4.43E-04
36	GO:0006680: glucosylceramide catabolic process	4.43E-04
37	GO:1900384: regulation of flavonol biosynthetic process	4.43E-04
38	GO:0019510: S-adenosylhomocysteine catabolic process	4.43E-04
39	GO:2000070: regulation of response to water deprivation	5.37E-04
40	GO:0045010: actin nucleation	5.37E-04
41	GO:0009414: response to water deprivation	6.16E-04
42	GO:0009737: response to abscisic acid	6.65E-04
43	GO:0006783: heme biosynthetic process	7.84E-04
44	GO:0010193: response to ozone	8.08E-04
45	GO:2000280: regulation of root development	9.23E-04
46	GO:0010372: positive regulation of gibberellin biosynthetic process	9.56E-04
47	GO:0006741: NADP biosynthetic process	9.56E-04
48	GO:2000030: regulation of response to red or far red light	9.56E-04
49	GO:0033353: S-adenosylmethionine cycle	9.56E-04
50	GO:0015893: drug transport	9.56E-04
51	GO:0080148: negative regulation of response to water deprivation	9.56E-04
52	GO:0010507: negative regulation of autophagy	9.56E-04
53	GO:0046939: nucleotide phosphorylation	9.56E-04
54	GO:0042754: negative regulation of circadian rhythm	9.56E-04
55	GO:0009620: response to fungus	1.33E-03
56	GO:0009753: response to jasmonic acid	1.50E-03
57	GO:0080168: abscisic acid transport	1.56E-03
58	GO:0006598: polyamine catabolic process	1.56E-03
59	GO:0010366: negative regulation of ethylene biosynthetic process	1.56E-03
60	GO:0019674: NAD metabolic process	1.56E-03
61	GO:0006011: UDP-glucose metabolic process	1.56E-03
62	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.56E-03
63	GO:0034605: cellular response to heat	1.81E-03
64	GO:0006970: response to osmotic stress	1.90E-03
65	GO:0009901: anther dehiscence	2.03E-03
66	GO:0070588: calcium ion transmembrane transport	2.03E-03
67	GO:0030100: regulation of endocytosis	2.25E-03
68	GO:0009226: nucleotide-sugar biosynthetic process	2.25E-03
69	GO:0009399: nitrogen fixation	2.25E-03
70	GO:0048530: fruit morphogenesis	2.25E-03
71	GO:0019363: pyridine nucleotide biosynthetic process	2.25E-03
72	GO:0043207: response to external biotic stimulus	2.25E-03
73	GO:0006351: transcription, DNA-templated	2.26E-03
74	GO:0080167: response to karrikin	2.44E-03
75	GO:0009863: salicylic acid mediated signaling pathway	2.52E-03
76	GO:0009651: response to salt stress	2.53E-03
77	GO:0006839: mitochondrial transport	2.88E-03
78	GO:0010107: potassium ion import	3.03E-03
79	GO:0033356: UDP-L-arabinose metabolic process	3.03E-03
80	GO:0006749: glutathione metabolic process	3.03E-03
81	GO:1902347: response to strigolactone	3.03E-03
82	GO:0009694: jasmonic acid metabolic process	3.03E-03
83	GO:0015743: malate transport	3.03E-03
84	GO:0045727: positive regulation of translation	3.03E-03
85	GO:0009686: gibberellin biosynthetic process	3.65E-03
86	GO:0040007: growth	3.65E-03
87	GO:0009164: nucleoside catabolic process	3.88E-03
88	GO:0030041: actin filament polymerization	3.88E-03
89	GO:0045487: gibberellin catabolic process	3.88E-03
90	GO:0009247: glycolipid biosynthetic process	3.88E-03
91	GO:0009555: pollen development	4.09E-03
92	GO:0035556: intracellular signal transduction	4.55E-03
93	GO:0048653: anther development	4.65E-03
94	GO:0042631: cellular response to water deprivation	4.65E-03
95	GO:0006796: phosphate-containing compound metabolic process	4.80E-03
96	GO:0006828: manganese ion transport	4.80E-03
97	GO:1900425: negative regulation of defense response to bacterium	4.80E-03
98	GO:0010337: regulation of salicylic acid metabolic process	4.80E-03
99	GO:0015691: cadmium ion transport	4.80E-03
100	GO:0006751: glutathione catabolic process	4.80E-03
101	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	4.80E-03
102	GO:0010256: endomembrane system organization	4.80E-03
103	GO:0048317: seed morphogenesis	4.80E-03
104	GO:0071472: cellular response to salt stress	5.01E-03
105	GO:0048544: recognition of pollen	5.39E-03
106	GO:0046686: response to cadmium ion	5.62E-03
107	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	5.79E-03
108	GO:0006979: response to oxidative stress	5.83E-03
109	GO:0006355: regulation of transcription, DNA-templated	6.29E-03
110	GO:0055085: transmembrane transport	6.54E-03
111	GO:1900057: positive regulation of leaf senescence	6.85E-03
112	GO:0006401: RNA catabolic process	6.85E-03
113	GO:0010161: red light signaling pathway	6.85E-03
114	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	6.85E-03
115	GO:0006402: mRNA catabolic process	7.97E-03
116	GO:1900150: regulation of defense response to fungus	7.97E-03
117	GO:0019375: galactolipid biosynthetic process	7.97E-03
118	GO:0009704: de-etiolation	7.97E-03
119	GO:0048193: Golgi vesicle transport	9.15E-03
120	GO:0009699: phenylpropanoid biosynthetic process	9.15E-03
121	GO:0009932: cell tip growth	9.15E-03
122	GO:0090333: regulation of stomatal closure	1.04E-02
123	GO:0098656: anion transmembrane transport	1.04E-02
124	GO:0046777: protein autophosphorylation	1.06E-02
125	GO:0015995: chlorophyll biosynthetic process	1.06E-02
126	GO:0009409: response to cold	1.10E-02
127	GO:0009845: seed germination	1.14E-02
128	GO:0009086: methionine biosynthetic process	1.17E-02
129	GO:0008202: steroid metabolic process	1.17E-02
130	GO:0006779: porphyrin-containing compound biosynthetic process	1.17E-02
131	GO:0010311: lateral root formation	1.24E-02
132	GO:0009407: toxin catabolic process	1.30E-02
133	GO:0007064: mitotic sister chromatid cohesion	1.30E-02
134	GO:0006782: protoporphyrinogen IX biosynthetic process	1.30E-02
135	GO:0019538: protein metabolic process	1.30E-02
136	GO:0048829: root cap development	1.30E-02
137	GO:0055062: phosphate ion homeostasis	1.30E-02
138	GO:0048527: lateral root development	1.36E-02
139	GO:0072593: reactive oxygen species metabolic process	1.45E-02
140	GO:0015770: sucrose transport	1.45E-02
141	GO:1903507: negative regulation of nucleic acid-templated transcription	1.45E-02
142	GO:0010015: root morphogenesis	1.45E-02
143	GO:0006816: calcium ion transport	1.45E-02
144	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.59E-02
145	GO:0071365: cellular response to auxin stimulus	1.59E-02
146	GO:0042742: defense response to bacterium	1.62E-02
147	GO:0045893: positive regulation of transcription, DNA-templated	1.67E-02
148	GO:0018107: peptidyl-threonine phosphorylation	1.74E-02
149	GO:0055046: microgametogenesis	1.74E-02
150	GO:0007166: cell surface receptor signaling pathway	1.84E-02
151	GO:0002237: response to molecule of bacterial origin	1.90E-02
152	GO:0009640: photomorphogenesis	1.93E-02
153	GO:0009617: response to bacterium	1.95E-02
154	GO:0010468: regulation of gene expression	1.95E-02
155	GO:0005985: sucrose metabolic process	2.06E-02
156	GO:0071732: cellular response to nitric oxide	2.06E-02
157	GO:0009969: xyloglucan biosynthetic process	2.06E-02
158	GO:0009636: response to toxic substance	2.17E-02
159	GO:0031347: regulation of defense response	2.34E-02
160	GO:2000377: regulation of reactive oxygen species metabolic process	2.40E-02
161	GO:0043622: cortical microtubule organization	2.57E-02
162	GO:0007165: signal transduction	2.70E-02
163	GO:0010224: response to UV-B	2.70E-02
164	GO:0016998: cell wall macromolecule catabolic process	2.75E-02
165	GO:0098542: defense response to other organism	2.75E-02
166	GO:0016226: iron-sulfur cluster assembly	2.93E-02
167	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.93E-02
168	GO:0030433: ubiquitin-dependent ERAD pathway	2.93E-02
169	GO:0006730: one-carbon metabolic process	2.93E-02
170	GO:0031348: negative regulation of defense response	2.93E-02
171	GO:0030245: cellulose catabolic process	2.93E-02
172	GO:0010017: red or far-red light signaling pathway	2.93E-02
173	GO:0071215: cellular response to abscisic acid stimulus	3.12E-02
174	GO:0071369: cellular response to ethylene stimulus	3.12E-02
175	GO:0006817: phosphate ion transport	3.31E-02
176	GO:0048443: stamen development	3.31E-02
177	GO:0019722: calcium-mediated signaling	3.31E-02
178	GO:0009306: protein secretion	3.31E-02
179	GO:0006810: transport	3.32E-02
180	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.68E-02
181	GO:0000271: polysaccharide biosynthetic process	3.71E-02
182	GO:0010118: stomatal movement	3.71E-02
183	GO:0009738: abscisic acid-activated signaling pathway	3.81E-02
184	GO:0009960: endosperm development	3.91E-02
185	GO:0009958: positive gravitropism	3.91E-02
186	GO:0045489: pectin biosynthetic process	3.91E-02
187	GO:0009742: brassinosteroid mediated signaling pathway	3.93E-02
188	GO:0006814: sodium ion transport	4.12E-02
189	GO:0000398: mRNA splicing, via spliceosome	4.27E-02
190	GO:0009749: response to glucose	4.33E-02
191	GO:0002229: defense response to oomycetes	4.54E-02
192	GO:0031047: gene silencing by RNA	4.76E-02
193	GO:0071281: cellular response to iron ion	4.98E-02
194	GO:1901657: glycosyl compound metabolic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0070566: adenylyltransferase activity	0.00E+00
2	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
3	GO:0005522: profilin binding	0.00E+00
4	GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity	0.00E+00
5	GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity	0.00E+00
6	GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity	0.00E+00
7	GO:0047350: glucuronate-1-phosphate uridylyltransferase activity	0.00E+00
8	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
9	GO:0061798: GTP 3',8'-cyclase activity	0.00E+00
10	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
11	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
12	GO:0090416: nicotinate transporter activity	0.00E+00
13	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
14	GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity	0.00E+00
15	GO:0043565: sequence-specific DNA binding	8.44E-06
16	GO:0016165: linoleate 13S-lipoxygenase activity	2.99E-05
17	GO:0016301: kinase activity	1.33E-04
18	GO:0005524: ATP binding	2.14E-04
19	GO:0004722: protein serine/threonine phosphatase activity	2.55E-04
20	GO:0004348: glucosylceramidase activity	4.43E-04
21	GO:0004325: ferrochelatase activity	4.43E-04
22	GO:0047150: betaine-homocysteine S-methyltransferase activity	4.43E-04
23	GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity	4.43E-04
24	GO:0090440: abscisic acid transporter activity	4.43E-04
25	GO:0042736: NADH kinase activity	4.43E-04
26	GO:0052894: norspermine:oxygen oxidoreductase activity	4.43E-04
27	GO:0090422: thiamine pyrophosphate transporter activity	4.43E-04
28	GO:0004013: adenosylhomocysteinase activity	4.43E-04
29	GO:0015085: calcium ion transmembrane transporter activity	4.43E-04
30	GO:0008514: organic anion transmembrane transporter activity	4.58E-04
31	GO:0004674: protein serine/threonine kinase activity	6.11E-04
32	GO:0003951: NAD+ kinase activity	6.55E-04
33	GO:0016629: 12-oxophytodienoate reductase activity	9.56E-04
34	GO:0004103: choline kinase activity	9.56E-04
35	GO:0008883: glutamyl-tRNA reductase activity	9.56E-04
36	GO:0001047: core promoter binding	9.56E-04
37	GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity	9.56E-04
38	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	9.56E-04
39	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	9.56E-04
40	GO:0004713: protein tyrosine kinase activity	1.07E-03
41	GO:0003840: gamma-glutamyltransferase activity	1.56E-03
42	GO:0036374: glutathione hydrolase activity	1.56E-03
43	GO:0004383: guanylate cyclase activity	1.56E-03
44	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	1.56E-03
45	GO:0046592: polyamine oxidase activity	1.56E-03
46	GO:0004672: protein kinase activity	1.77E-03
47	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.98E-03
48	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.17E-03
49	GO:0035250: UDP-galactosyltransferase activity	2.25E-03
50	GO:0005432: calcium:sodium antiporter activity	2.25E-03
51	GO:0004715: non-membrane spanning protein tyrosine kinase activity	2.25E-03
52	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.25E-03
53	GO:0019201: nucleotide kinase activity	2.25E-03
54	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.25E-03
55	GO:0001653: peptide receptor activity	2.25E-03
56	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	2.25E-03
57	GO:0015144: carbohydrate transmembrane transporter activity	2.84E-03
58	GO:0005253: anion channel activity	3.03E-03
59	GO:0004659: prenyltransferase activity	3.03E-03
60	GO:0015368: calcium:cation antiporter activity	3.03E-03
61	GO:0015369: calcium:proton antiporter activity	3.03E-03
62	GO:0043015: gamma-tubulin binding	3.03E-03
63	GO:0004707: MAP kinase activity	3.05E-03
64	GO:0005351: sugar:proton symporter activity	3.41E-03
65	GO:0018685: alkane 1-monooxygenase activity	3.88E-03
66	GO:0047631: ADP-ribose diphosphatase activity	3.88E-03
67	GO:0002020: protease binding	3.88E-03
68	GO:0004356: glutamate-ammonia ligase activity	3.88E-03
69	GO:0000210: NAD+ diphosphatase activity	4.80E-03
70	GO:0035673: oligopeptide transmembrane transporter activity	4.80E-03
71	GO:0044212: transcription regulatory region DNA binding	5.73E-03
72	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	5.79E-03
73	GO:0004017: adenylate kinase activity	5.79E-03
74	GO:0003950: NAD+ ADP-ribosyltransferase activity	5.79E-03
75	GO:0019900: kinase binding	5.79E-03
76	GO:0015140: malate transmembrane transporter activity	6.85E-03
77	GO:0019899: enzyme binding	6.85E-03
78	GO:0008143: poly(A) binding	6.85E-03
79	GO:0043295: glutathione binding	6.85E-03
80	GO:0004143: diacylglycerol kinase activity	6.85E-03
81	GO:0008506: sucrose:proton symporter activity	6.85E-03
82	GO:0004427: inorganic diphosphatase activity	6.85E-03
83	GO:0016621: cinnamoyl-CoA reductase activity	6.85E-03
84	GO:0015491: cation:cation antiporter activity	7.97E-03
85	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	7.99E-03
86	GO:0005516: calmodulin binding	9.11E-03
87	GO:0008142: oxysterol binding	9.15E-03
88	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.04E-02
89	GO:0004721: phosphoprotein phosphatase activity	1.06E-02
90	GO:0047617: acyl-CoA hydrolase activity	1.17E-02
91	GO:0004864: protein phosphatase inhibitor activity	1.30E-02
92	GO:0008515: sucrose transmembrane transporter activity	1.45E-02
93	GO:0004860: protein kinase inhibitor activity	1.45E-02
94	GO:0015297: antiporter activity	1.47E-02
95	GO:0015198: oligopeptide transporter activity	1.59E-02
96	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.63E-02
97	GO:0005388: calcium-transporting ATPase activity	1.74E-02
98	GO:0000175: 3'-5'-exoribonuclease activity	1.74E-02
99	GO:0005315: inorganic phosphate transmembrane transporter activity	1.74E-02
100	GO:0005262: calcium channel activity	1.74E-02
101	GO:0019888: protein phosphatase regulator activity	1.74E-02
102	GO:0004364: glutathione transferase activity	1.85E-02
103	GO:0008131: primary amine oxidase activity	1.90E-02
104	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.90E-02
105	GO:0030246: carbohydrate binding	2.19E-02
106	GO:0003714: transcription corepressor activity	2.40E-02
107	GO:0051087: chaperone binding	2.57E-02
108	GO:0004540: ribonuclease activity	2.75E-02
109	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.75E-02
110	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.93E-02
111	GO:0022891: substrate-specific transmembrane transporter activity	3.12E-02
112	GO:0050660: flavin adenine dinucleotide binding	3.24E-02
113	GO:0003779: actin binding	3.60E-02
114	GO:0050662: coenzyme binding	4.12E-02
115	GO:0010181: FMN binding	4.12E-02
116	GO:0016853: isomerase activity	4.12E-02
117	GO:0019901: protein kinase binding	4.33E-02
118	GO:0046872: metal ion binding	4.71E-02
119	GO:0004518: nuclease activity	4.76E-02
120	GO:0051015: actin filament binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	9.81E-05
2	GO:0016363: nuclear matrix	3.33E-04
3	GO:0005911: cell-cell junction	4.43E-04
4	GO:0016442: RISC complex	4.43E-04
5	GO:0019008: molybdopterin synthase complex	4.43E-04
6	GO:0016021: integral component of membrane	5.29E-04
7	GO:0010494: cytoplasmic stress granule	7.84E-04
8	GO:0090406: pollen tube	3.37E-03
9	GO:0000178: exosome (RNase complex)	3.88E-03
10	GO:0005743: mitochondrial inner membrane	4.26E-03
11	GO:0030173: integral component of Golgi membrane	5.79E-03
12	GO:0009536: plastid	8.89E-03
13	GO:0000932: P-body	8.99E-03
14	GO:0016604: nuclear body	1.17E-02
15	GO:0090404: pollen tube tip	1.45E-02
16	GO:0071013: catalytic step 2 spliceosome	1.45E-02
17	GO:0048471: perinuclear region of cytoplasm	1.45E-02
18	GO:0000159: protein phosphatase type 2A complex	1.45E-02
19	GO:0009705: plant-type vacuole membrane	1.56E-02
20	GO:0046658: anchored component of plasma membrane	2.22E-02
21	GO:0005758: mitochondrial intermembrane space	2.40E-02
22	GO:0031225: anchored component of membrane	2.80E-02
23	GO:0005737: cytoplasm	3.48E-02
24	GO:0030136: clathrin-coated vesicle	3.51E-02
25	GO:0009706: chloroplast inner membrane	3.71E-02
26	GO:0005770: late endosome	3.91E-02
27	GO:0005783: endoplasmic reticulum	4.04E-02