co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090279: regulation of calcium ion import	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
6	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
7	GO:2000505: regulation of energy homeostasis	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0030155: regulation of cell adhesion	0.00E+00
10	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
11	GO:0061635: regulation of protein complex stability	0.00E+00
12	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
13	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
14	GO:0005996: monosaccharide metabolic process	0.00E+00
15	GO:0017038: protein import	0.00E+00
16	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
17	GO:0015979: photosynthesis	6.41E-10
18	GO:0032544: plastid translation	6.72E-10
19	GO:0009773: photosynthetic electron transport in photosystem I	5.59E-09
20	GO:0006412: translation	6.39E-09
21	GO:0010027: thylakoid membrane organization	5.33E-08
22	GO:0006418: tRNA aminoacylation for protein translation	6.58E-08
23	GO:0009735: response to cytokinin	3.61E-07
24	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.24E-06
25	GO:0009658: chloroplast organization	7.12E-06
26	GO:0042254: ribosome biogenesis	7.57E-06
27	GO:0016117: carotenoid biosynthetic process	8.90E-06
28	GO:0010206: photosystem II repair	1.17E-05
29	GO:0006000: fructose metabolic process	1.17E-05
30	GO:0010021: amylopectin biosynthetic process	4.76E-05
31	GO:0006109: regulation of carbohydrate metabolic process	4.76E-05
32	GO:0015995: chlorophyll biosynthetic process	5.62E-05
33	GO:0032543: mitochondrial translation	7.56E-05
34	GO:0010190: cytochrome b6f complex assembly	1.10E-04
35	GO:1901259: chloroplast rRNA processing	1.51E-04
36	GO:0010196: nonphotochemical quenching	1.99E-04
37	GO:0080093: regulation of photorespiration	2.65E-04
38	GO:0043007: maintenance of rDNA	2.65E-04
39	GO:0031998: regulation of fatty acid beta-oxidation	2.65E-04
40	GO:0034337: RNA folding	2.65E-04
41	GO:0006431: methionyl-tRNA aminoacylation	2.65E-04
42	GO:0006438: valyl-tRNA aminoacylation	2.65E-04
43	GO:0055114: oxidation-reduction process	2.68E-04
44	GO:0006002: fructose 6-phosphate metabolic process	3.10E-04
45	GO:0090342: regulation of cell aging	5.83E-04
46	GO:0097054: L-glutamate biosynthetic process	5.83E-04
47	GO:0051262: protein tetramerization	5.83E-04
48	GO:0016560: protein import into peroxisome matrix, docking	5.83E-04
49	GO:0043085: positive regulation of catalytic activity	5.99E-04
50	GO:0009409: response to cold	6.41E-04
51	GO:0006094: gluconeogenesis	7.76E-04
52	GO:0005986: sucrose biosynthetic process	7.76E-04
53	GO:0045454: cell redox homeostasis	8.76E-04
54	GO:0090391: granum assembly	9.47E-04
55	GO:0006518: peptide metabolic process	9.47E-04
56	GO:0016050: vesicle organization	9.47E-04
57	GO:0048281: inflorescence morphogenesis	9.47E-04
58	GO:0034599: cellular response to oxidative stress	9.91E-04
59	GO:0010148: transpiration	1.35E-03
60	GO:0010731: protein glutathionylation	1.35E-03
61	GO:0006424: glutamyl-tRNA aminoacylation	1.35E-03
62	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.35E-03
63	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.35E-03
64	GO:0006537: glutamate biosynthetic process	1.35E-03
65	GO:0006546: glycine catabolic process	1.81E-03
66	GO:0051205: protein insertion into membrane	1.81E-03
67	GO:0006808: regulation of nitrogen utilization	1.81E-03
68	GO:0010109: regulation of photosynthesis	1.81E-03
69	GO:0019676: ammonia assimilation cycle	1.81E-03
70	GO:0019464: glycine decarboxylation via glycine cleavage system	1.81E-03
71	GO:0045727: positive regulation of translation	1.81E-03
72	GO:0015994: chlorophyll metabolic process	1.81E-03
73	GO:0016120: carotene biosynthetic process	2.31E-03
74	GO:0010236: plastoquinone biosynthetic process	2.31E-03
75	GO:0045038: protein import into chloroplast thylakoid membrane	2.31E-03
76	GO:0009793: embryo development ending in seed dormancy	2.31E-03
77	GO:0006097: glyoxylate cycle	2.31E-03
78	GO:0006461: protein complex assembly	2.31E-03
79	GO:0016123: xanthophyll biosynthetic process	2.31E-03
80	GO:0006662: glycerol ether metabolic process	2.36E-03
81	GO:0019252: starch biosynthetic process	2.71E-03
82	GO:0000470: maturation of LSU-rRNA	2.85E-03
83	GO:0030488: tRNA methylation	3.43E-03
84	GO:0009955: adaxial/abaxial pattern specification	3.43E-03
85	GO:0009645: response to low light intensity stimulus	4.04E-03
86	GO:0010103: stomatal complex morphogenesis	4.04E-03
87	GO:0009772: photosynthetic electron transport in photosystem II	4.04E-03
88	GO:0071446: cellular response to salicylic acid stimulus	4.04E-03
89	GO:0070370: cellular heat acclimation	4.04E-03
90	GO:0006605: protein targeting	4.69E-03
91	GO:0005978: glycogen biosynthetic process	4.69E-03
92	GO:0009642: response to light intensity	4.69E-03
93	GO:0009657: plastid organization	5.37E-03
94	GO:0006526: arginine biosynthetic process	5.37E-03
95	GO:0017004: cytochrome complex assembly	5.37E-03
96	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.37E-03
97	GO:0001558: regulation of cell growth	5.37E-03
98	GO:0048481: plant ovule development	5.46E-03
99	GO:0006783: heme biosynthetic process	6.09E-03
100	GO:0005982: starch metabolic process	6.83E-03
101	GO:0010205: photoinhibition	6.83E-03
102	GO:0048829: root cap development	7.61E-03
103	GO:0006782: protoporphyrinogen IX biosynthetic process	7.61E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	8.42E-03
105	GO:0006415: translational termination	8.42E-03
106	GO:0000272: polysaccharide catabolic process	8.42E-03
107	GO:0009750: response to fructose	8.42E-03
108	GO:0018119: peptidyl-cysteine S-nitrosylation	8.42E-03
109	GO:0016485: protein processing	8.42E-03
110	GO:0015706: nitrate transport	9.26E-03
111	GO:0045037: protein import into chloroplast stroma	9.26E-03
112	GO:0005983: starch catabolic process	9.26E-03
113	GO:0010102: lateral root morphogenesis	1.01E-02
114	GO:0010628: positive regulation of gene expression	1.01E-02
115	GO:0006108: malate metabolic process	1.01E-02
116	GO:0019253: reductive pentose-phosphate cycle	1.10E-02
117	GO:0010207: photosystem II assembly	1.10E-02
118	GO:0042742: defense response to bacterium	1.18E-02
119	GO:0005985: sucrose metabolic process	1.20E-02
120	GO:0006636: unsaturated fatty acid biosynthetic process	1.29E-02
121	GO:0000027: ribosomal large subunit assembly	1.39E-02
122	GO:0009944: polarity specification of adaxial/abaxial axis	1.39E-02
123	GO:0043086: negative regulation of catalytic activity	1.43E-02
124	GO:0009768: photosynthesis, light harvesting in photosystem I	1.49E-02
125	GO:0051302: regulation of cell division	1.49E-02
126	GO:0016575: histone deacetylation	1.49E-02
127	GO:0019915: lipid storage	1.59E-02
128	GO:0061077: chaperone-mediated protein folding	1.59E-02
129	GO:0016226: iron-sulfur cluster assembly	1.70E-02
130	GO:0040007: growth	1.81E-02
131	GO:0001944: vasculature development	1.81E-02
132	GO:0009561: megagametogenesis	1.92E-02
133	GO:0006284: base-excision repair	1.92E-02
134	GO:0042631: cellular response to water deprivation	2.15E-02
135	GO:0006520: cellular amino acid metabolic process	2.26E-02
136	GO:0006810: transport	2.28E-02
137	GO:0009646: response to absence of light	2.38E-02
138	GO:0008152: metabolic process	2.50E-02
139	GO:0009790: embryo development	2.52E-02
140	GO:0000302: response to reactive oxygen species	2.63E-02
141	GO:0071554: cell wall organization or biogenesis	2.63E-02
142	GO:0010090: trichome morphogenesis	2.88E-02
143	GO:1901657: glycosyl compound metabolic process	2.88E-02
144	GO:0030163: protein catabolic process	2.88E-02
145	GO:0007623: circadian rhythm	2.98E-02
146	GO:0042128: nitrate assimilation	3.70E-02
147	GO:0006979: response to oxidative stress	3.70E-02
148	GO:0016311: dephosphorylation	3.98E-02
149	GO:0018298: protein-chromophore linkage	4.13E-02
150	GO:0009817: defense response to fungus, incompatible interaction	4.13E-02
151	GO:0009834: plant-type secondary cell wall biogenesis	4.43E-02
152	GO:0006499: N-terminal protein myristoylation	4.43E-02
153	GO:0048527: lateral root development	4.58E-02
154	GO:0009853: photorespiration	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0043014: alpha-tubulin binding	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0046408: chlorophyll synthetase activity	0.00E+00
6	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
9	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
10	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
11	GO:0090711: FMN hydrolase activity	0.00E+00
12	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
13	GO:0051721: protein phosphatase 2A binding	0.00E+00
14	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
15	GO:0042903: tubulin deacetylase activity	0.00E+00
16	GO:0016166: phytoene dehydrogenase activity	0.00E+00
17	GO:0019843: rRNA binding	6.76E-19
18	GO:0003735: structural constituent of ribosome	2.47E-11
19	GO:0004812: aminoacyl-tRNA ligase activity	2.34E-07
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.24E-06
21	GO:0002161: aminoacyl-tRNA editing activity	1.17E-05
22	GO:0004853: uroporphyrinogen decarboxylase activity	2.65E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	2.65E-04
24	GO:0004832: valine-tRNA ligase activity	2.65E-04
25	GO:0004825: methionine-tRNA ligase activity	2.65E-04
26	GO:0016041: glutamate synthase (ferredoxin) activity	2.65E-04
27	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.65E-04
28	GO:0005227: calcium activated cation channel activity	2.65E-04
29	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.65E-04
30	GO:0008047: enzyme activator activity	5.20E-04
31	GO:0008967: phosphoglycolate phosphatase activity	5.83E-04
32	GO:0010291: carotene beta-ring hydroxylase activity	5.83E-04
33	GO:0047746: chlorophyllase activity	5.83E-04
34	GO:0010297: heteropolysaccharide binding	5.83E-04
35	GO:0033201: alpha-1,4-glucan synthase activity	5.83E-04
36	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.83E-04
37	GO:0016491: oxidoreductase activity	5.99E-04
38	GO:0016787: hydrolase activity	6.40E-04
39	GO:0008236: serine-type peptidase activity	6.55E-04
40	GO:0031072: heat shock protein binding	7.76E-04
41	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.47E-04
42	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.47E-04
43	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	9.47E-04
44	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.47E-04
45	GO:0043169: cation binding	9.47E-04
46	GO:0004373: glycogen (starch) synthase activity	9.47E-04
47	GO:0017150: tRNA dihydrouridine synthase activity	9.47E-04
48	GO:0004857: enzyme inhibitor activity	1.20E-03
49	GO:0005528: FK506 binding	1.20E-03
50	GO:0048487: beta-tubulin binding	1.35E-03
51	GO:0016149: translation release factor activity, codon specific	1.35E-03
52	GO:0016851: magnesium chelatase activity	1.35E-03
53	GO:0043023: ribosomal large subunit binding	1.35E-03
54	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.35E-03
55	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.35E-03
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.56E-03
57	GO:0009011: starch synthase activity	1.81E-03
58	GO:0042277: peptide binding	1.81E-03
59	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.81E-03
60	GO:0019199: transmembrane receptor protein kinase activity	1.81E-03
61	GO:0047134: protein-disulfide reductase activity	2.03E-03
62	GO:0051538: 3 iron, 4 sulfur cluster binding	2.31E-03
63	GO:0008725: DNA-3-methyladenine glycosylase activity	2.31E-03
64	GO:0004791: thioredoxin-disulfide reductase activity	2.53E-03
65	GO:0016615: malate dehydrogenase activity	2.85E-03
66	GO:0004130: cytochrome-c peroxidase activity	2.85E-03
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.30E-03
68	GO:0030060: L-malate dehydrogenase activity	3.43E-03
69	GO:0005261: cation channel activity	3.43E-03
70	GO:0051920: peroxiredoxin activity	3.43E-03
71	GO:0004017: adenylate kinase activity	3.43E-03
72	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.04E-03
73	GO:0004252: serine-type endopeptidase activity	4.46E-03
74	GO:0004033: aldo-keto reductase (NADP) activity	4.69E-03
75	GO:0016209: antioxidant activity	4.69E-03
76	GO:0008173: RNA methyltransferase activity	5.37E-03
77	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.37E-03
78	GO:0004222: metalloendopeptidase activity	6.03E-03
79	GO:0003747: translation release factor activity	6.09E-03
80	GO:0071949: FAD binding	6.09E-03
81	GO:0015112: nitrate transmembrane transporter activity	6.83E-03
82	GO:0004161: dimethylallyltranstransferase activity	8.42E-03
83	GO:0047372: acylglycerol lipase activity	8.42E-03
84	GO:0000049: tRNA binding	9.26E-03
85	GO:0043621: protein self-association	9.68E-03
86	GO:0008266: poly(U) RNA binding	1.10E-02
87	GO:0031409: pigment binding	1.29E-02
88	GO:0051536: iron-sulfur cluster binding	1.39E-02
89	GO:0004407: histone deacetylase activity	1.39E-02
90	GO:0004176: ATP-dependent peptidase activity	1.59E-02
91	GO:0051082: unfolded protein binding	1.72E-02
92	GO:0015035: protein disulfide oxidoreductase activity	1.78E-02
93	GO:0003756: protein disulfide isomerase activity	1.92E-02
94	GO:0050662: coenzyme binding	2.38E-02
95	GO:0048038: quinone binding	2.63E-02
96	GO:0008237: metallopeptidase activity	3.15E-02
97	GO:0016413: O-acetyltransferase activity	3.28E-02
98	GO:0016168: chlorophyll binding	3.56E-02
99	GO:0003723: RNA binding	3.76E-02
100	GO:0102483: scopolin beta-glucosidase activity	3.84E-02
101	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.13E-02
102	GO:0004601: peroxidase activity	4.60E-02
103	GO:0003746: translation elongation factor activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0043233: organelle lumen	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0042579: microbody	0.00E+00
5	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
6	GO:0009507: chloroplast	5.88E-74
7	GO:0009534: chloroplast thylakoid	3.58E-47
8	GO:0009570: chloroplast stroma	2.37E-45
9	GO:0009941: chloroplast envelope	1.21E-40
10	GO:0009535: chloroplast thylakoid membrane	9.17E-31
11	GO:0009579: thylakoid	2.67E-18
12	GO:0005840: ribosome	9.21E-15
13	GO:0009543: chloroplast thylakoid lumen	1.43E-12
14	GO:0031977: thylakoid lumen	4.88E-10
15	GO:0030095: chloroplast photosystem II	1.24E-06
16	GO:0010319: stromule	3.24E-05
17	GO:0009508: plastid chromosome	4.13E-05
18	GO:0009706: chloroplast inner membrane	5.94E-05
19	GO:0010287: plastoglobule	8.64E-05
20	GO:0009654: photosystem II oxygen evolving complex	9.78E-05
21	GO:0031969: chloroplast membrane	1.14E-04
22	GO:0016020: membrane	1.85E-04
23	GO:0009533: chloroplast stromal thylakoid	1.99E-04
24	GO:0009501: amyloplast	2.52E-04
25	GO:0009515: granal stacked thylakoid	2.65E-04
26	GO:0009547: plastid ribosome	2.65E-04
27	GO:0009782: photosystem I antenna complex	2.65E-04
28	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.65E-04
29	GO:0019898: extrinsic component of membrane	2.80E-04
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.74E-04
31	GO:0009295: nucleoid	4.29E-04
32	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.83E-04
33	GO:0030093: chloroplast photosystem I	5.83E-04
34	GO:0015934: large ribosomal subunit	8.37E-04
35	GO:0009509: chromoplast	9.47E-04
36	GO:0005782: peroxisomal matrix	9.47E-04
37	GO:0010007: magnesium chelatase complex	9.47E-04
38	GO:0042651: thylakoid membrane	1.32E-03
39	GO:0005960: glycine cleavage complex	1.35E-03
40	GO:0015935: small ribosomal subunit	1.44E-03
41	GO:0055035: plastid thylakoid membrane	2.31E-03
42	GO:0009522: photosystem I	2.53E-03
43	GO:0005623: cell	4.04E-03
44	GO:0009538: photosystem I reaction center	4.69E-03
45	GO:0042644: chloroplast nucleoid	6.09E-03
46	GO:0005763: mitochondrial small ribosomal subunit	6.09E-03
47	GO:0048046: apoplast	6.71E-03
48	GO:0000311: plastid large ribosomal subunit	9.26E-03
49	GO:0032040: small-subunit processome	9.26E-03
50	GO:0022626: cytosolic ribosome	1.20E-02
51	GO:0030076: light-harvesting complex	1.20E-02
52	GO:0022625: cytosolic large ribosomal subunit	1.44E-02
53	GO:0009536: plastid	1.68E-02
54	GO:0009523: photosystem II	2.51E-02