GO Enrichment Analysis of Co-expressed Genes with
AT3G25530
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:0098586: cellular response to virus | 0.00E+00 |
| 5 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 6 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 7 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 8 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 9 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 10 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 11 | GO:0090391: granum assembly | 2.54E-09 |
| 12 | GO:0018298: protein-chromophore linkage | 1.66E-07 |
| 13 | GO:0015979: photosynthesis | 4.40E-07 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 5.34E-06 |
| 15 | GO:0010189: vitamin E biosynthetic process | 4.06E-05 |
| 16 | GO:0019252: starch biosynthetic process | 5.26E-05 |
| 17 | GO:0010196: nonphotochemical quenching | 5.48E-05 |
| 18 | GO:0048564: photosystem I assembly | 7.12E-05 |
| 19 | GO:0009642: response to light intensity | 7.12E-05 |
| 20 | GO:0009657: plastid organization | 9.00E-05 |
| 21 | GO:0010027: thylakoid membrane organization | 1.02E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 1.16E-04 |
| 23 | GO:0010028: xanthophyll cycle | 1.16E-04 |
| 24 | GO:0010362: negative regulation of anion channel activity by blue light | 1.16E-04 |
| 25 | GO:0051775: response to redox state | 1.16E-04 |
| 26 | GO:0071277: cellular response to calcium ion | 1.16E-04 |
| 27 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.16E-04 |
| 28 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.16E-04 |
| 29 | GO:1904964: positive regulation of phytol biosynthetic process | 1.16E-04 |
| 30 | GO:0006790: sulfur compound metabolic process | 2.16E-04 |
| 31 | GO:0005986: sucrose biosynthetic process | 2.47E-04 |
| 32 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.69E-04 |
| 33 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.69E-04 |
| 34 | GO:0042853: L-alanine catabolic process | 2.69E-04 |
| 35 | GO:0046741: transport of virus in host, tissue to tissue | 2.69E-04 |
| 36 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.69E-04 |
| 37 | GO:0042548: regulation of photosynthesis, light reaction | 2.69E-04 |
| 38 | GO:0006435: threonyl-tRNA aminoacylation | 2.69E-04 |
| 39 | GO:0030187: melatonin biosynthetic process | 2.69E-04 |
| 40 | GO:0000256: allantoin catabolic process | 2.69E-04 |
| 41 | GO:0019253: reductive pentose-phosphate cycle | 2.81E-04 |
| 42 | GO:0046854: phosphatidylinositol phosphorylation | 3.15E-04 |
| 43 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.32E-04 |
| 44 | GO:0005977: glycogen metabolic process | 4.45E-04 |
| 45 | GO:0006000: fructose metabolic process | 4.45E-04 |
| 46 | GO:0009405: pathogenesis | 4.45E-04 |
| 47 | GO:0010136: ureide catabolic process | 4.45E-04 |
| 48 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.38E-04 |
| 49 | GO:0006020: inositol metabolic process | 6.38E-04 |
| 50 | GO:0006107: oxaloacetate metabolic process | 6.38E-04 |
| 51 | GO:0006145: purine nucleobase catabolic process | 6.38E-04 |
| 52 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.38E-04 |
| 53 | GO:0046739: transport of virus in multicellular host | 6.38E-04 |
| 54 | GO:0043572: plastid fission | 6.38E-04 |
| 55 | GO:0006546: glycine catabolic process | 8.47E-04 |
| 56 | GO:0006021: inositol biosynthetic process | 8.47E-04 |
| 57 | GO:0006734: NADH metabolic process | 8.47E-04 |
| 58 | GO:0009902: chloroplast relocation | 8.47E-04 |
| 59 | GO:0010021: amylopectin biosynthetic process | 8.47E-04 |
| 60 | GO:0010236: plastoquinone biosynthetic process | 1.07E-03 |
| 61 | GO:0006413: translational initiation | 1.23E-03 |
| 62 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.31E-03 |
| 63 | GO:0046855: inositol phosphate dephosphorylation | 1.31E-03 |
| 64 | GO:0009643: photosynthetic acclimation | 1.31E-03 |
| 65 | GO:0050665: hydrogen peroxide biosynthetic process | 1.31E-03 |
| 66 | GO:0007623: circadian rhythm | 1.34E-03 |
| 67 | GO:0009854: oxidative photosynthetic carbon pathway | 1.56E-03 |
| 68 | GO:0071470: cellular response to osmotic stress | 1.56E-03 |
| 69 | GO:0009645: response to low light intensity stimulus | 1.84E-03 |
| 70 | GO:0009735: response to cytokinin | 1.89E-03 |
| 71 | GO:0007568: aging | 1.99E-03 |
| 72 | GO:0055114: oxidation-reduction process | 2.05E-03 |
| 73 | GO:0009704: de-etiolation | 2.13E-03 |
| 74 | GO:0009637: response to blue light | 2.18E-03 |
| 75 | GO:0009853: photorespiration | 2.18E-03 |
| 76 | GO:0034599: cellular response to oxidative stress | 2.28E-03 |
| 77 | GO:0009658: chloroplast organization | 2.32E-03 |
| 78 | GO:0006002: fructose 6-phosphate metabolic process | 2.43E-03 |
| 79 | GO:0071482: cellular response to light stimulus | 2.43E-03 |
| 80 | GO:0032544: plastid translation | 2.43E-03 |
| 81 | GO:0098656: anion transmembrane transport | 2.74E-03 |
| 82 | GO:0009821: alkaloid biosynthetic process | 2.74E-03 |
| 83 | GO:0090333: regulation of stomatal closure | 2.74E-03 |
| 84 | GO:0010114: response to red light | 2.80E-03 |
| 85 | GO:0009644: response to high light intensity | 3.03E-03 |
| 86 | GO:0080167: response to karrikin | 3.05E-03 |
| 87 | GO:0009638: phototropism | 3.07E-03 |
| 88 | GO:0046686: response to cadmium ion | 3.29E-03 |
| 89 | GO:0006415: translational termination | 3.76E-03 |
| 90 | GO:0043085: positive regulation of catalytic activity | 3.76E-03 |
| 91 | GO:0006094: gluconeogenesis | 4.50E-03 |
| 92 | GO:0009767: photosynthetic electron transport chain | 4.50E-03 |
| 93 | GO:0006108: malate metabolic process | 4.50E-03 |
| 94 | GO:0006006: glucose metabolic process | 4.50E-03 |
| 95 | GO:0010020: chloroplast fission | 4.89E-03 |
| 96 | GO:0010207: photosystem II assembly | 4.89E-03 |
| 97 | GO:0006396: RNA processing | 5.49E-03 |
| 98 | GO:0006833: water transport | 5.70E-03 |
| 99 | GO:0006825: copper ion transport | 6.56E-03 |
| 100 | GO:0051302: regulation of cell division | 6.56E-03 |
| 101 | GO:0008299: isoprenoid biosynthetic process | 6.56E-03 |
| 102 | GO:0009058: biosynthetic process | 7.04E-03 |
| 103 | GO:0010118: stomatal movement | 9.38E-03 |
| 104 | GO:0034220: ion transmembrane transport | 9.38E-03 |
| 105 | GO:0006662: glycerol ether metabolic process | 9.89E-03 |
| 106 | GO:0009791: post-embryonic development | 1.09E-02 |
| 107 | GO:0000302: response to reactive oxygen species | 1.15E-02 |
| 108 | GO:0005975: carbohydrate metabolic process | 1.19E-02 |
| 109 | GO:0016032: viral process | 1.20E-02 |
| 110 | GO:0055085: transmembrane transport | 1.40E-02 |
| 111 | GO:0000160: phosphorelay signal transduction system | 1.86E-02 |
| 112 | GO:0010218: response to far red light | 1.92E-02 |
| 113 | GO:0016051: carbohydrate biosynthetic process | 2.12E-02 |
| 114 | GO:0045454: cell redox homeostasis | 2.13E-02 |
| 115 | GO:0006099: tricarboxylic acid cycle | 2.19E-02 |
| 116 | GO:0032259: methylation | 2.51E-02 |
| 117 | GO:0006364: rRNA processing | 3.15E-02 |
| 118 | GO:0006417: regulation of translation | 3.38E-02 |
| 119 | GO:0006096: glycolytic process | 3.54E-02 |
| 120 | GO:0009624: response to nematode | 4.04E-02 |
| 121 | GO:0035556: intracellular signal transduction | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 4 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 5 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 6 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 7 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 8 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 9 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 10 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 11 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 12 | GO:0019144: ADP-sugar diphosphatase activity | 0.00E+00 |
| 13 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 14 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 15 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 16 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 17 | GO:0070402: NADPH binding | 2.59E-06 |
| 18 | GO:0016168: chlorophyll binding | 4.22E-06 |
| 19 | GO:0008453: alanine-glyoxylate transaminase activity | 1.15E-05 |
| 20 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 4.06E-05 |
| 21 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.16E-04 |
| 22 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.16E-04 |
| 23 | GO:0035671: enone reductase activity | 1.16E-04 |
| 24 | GO:0047958: glycine:2-oxoglutarate aminotransferase activity | 1.16E-04 |
| 25 | GO:0080042: ADP-glucose pyrophosphohydrolase activity | 1.16E-04 |
| 26 | GO:0004008: copper-exporting ATPase activity | 1.16E-04 |
| 27 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.16E-04 |
| 28 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.16E-04 |
| 29 | GO:0080041: ADP-ribose pyrophosphohydrolase activity | 2.69E-04 |
| 30 | GO:0004047: aminomethyltransferase activity | 2.69E-04 |
| 31 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.69E-04 |
| 32 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.69E-04 |
| 33 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.69E-04 |
| 34 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.69E-04 |
| 35 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.69E-04 |
| 36 | GO:0004829: threonine-tRNA ligase activity | 2.69E-04 |
| 37 | GO:0019156: isoamylase activity | 2.69E-04 |
| 38 | GO:0019200: carbohydrate kinase activity | 2.69E-04 |
| 39 | GO:0031409: pigment binding | 3.52E-04 |
| 40 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.45E-04 |
| 41 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.45E-04 |
| 42 | GO:0050307: sucrose-phosphate phosphatase activity | 4.45E-04 |
| 43 | GO:0004751: ribose-5-phosphate isomerase activity | 4.45E-04 |
| 44 | GO:0022891: substrate-specific transmembrane transporter activity | 5.64E-04 |
| 45 | GO:0009882: blue light photoreceptor activity | 6.38E-04 |
| 46 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 6.38E-04 |
| 47 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 6.38E-04 |
| 48 | GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity | 6.38E-04 |
| 49 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 6.38E-04 |
| 50 | GO:0016851: magnesium chelatase activity | 6.38E-04 |
| 51 | GO:0004792: thiosulfate sulfurtransferase activity | 6.38E-04 |
| 52 | GO:0016149: translation release factor activity, codon specific | 6.38E-04 |
| 53 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 6.38E-04 |
| 54 | GO:0016853: isomerase activity | 8.22E-04 |
| 55 | GO:0010181: FMN binding | 8.22E-04 |
| 56 | GO:0043495: protein anchor | 8.47E-04 |
| 57 | GO:0009011: starch synthase activity | 8.47E-04 |
| 58 | GO:0008891: glycolate oxidase activity | 8.47E-04 |
| 59 | GO:0016615: malate dehydrogenase activity | 1.31E-03 |
| 60 | GO:0042578: phosphoric ester hydrolase activity | 1.31E-03 |
| 61 | GO:0004556: alpha-amylase activity | 1.31E-03 |
| 62 | GO:0046872: metal ion binding | 1.49E-03 |
| 63 | GO:0030060: L-malate dehydrogenase activity | 1.56E-03 |
| 64 | GO:0019899: enzyme binding | 1.84E-03 |
| 65 | GO:0004033: aldo-keto reductase (NADP) activity | 2.13E-03 |
| 66 | GO:0003746: translation elongation factor activity | 2.18E-03 |
| 67 | GO:0008135: translation factor activity, RNA binding | 2.43E-03 |
| 68 | GO:0005375: copper ion transmembrane transporter activity | 2.43E-03 |
| 69 | GO:0003747: translation release factor activity | 2.74E-03 |
| 70 | GO:0016844: strictosidine synthase activity | 3.07E-03 |
| 71 | GO:0008047: enzyme activator activity | 3.41E-03 |
| 72 | GO:0031072: heat shock protein binding | 4.50E-03 |
| 73 | GO:0000155: phosphorelay sensor kinase activity | 4.50E-03 |
| 74 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.50E-03 |
| 75 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.50E-03 |
| 76 | GO:0003727: single-stranded RNA binding | 8.40E-03 |
| 77 | GO:0008514: organic anion transmembrane transporter activity | 8.40E-03 |
| 78 | GO:0047134: protein-disulfide reductase activity | 8.88E-03 |
| 79 | GO:0016491: oxidoreductase activity | 9.60E-03 |
| 80 | GO:0008080: N-acetyltransferase activity | 9.89E-03 |
| 81 | GO:0004791: thioredoxin-disulfide reductase activity | 1.04E-02 |
| 82 | GO:0003743: translation initiation factor activity | 1.08E-02 |
| 83 | GO:0042802: identical protein binding | 1.17E-02 |
| 84 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.26E-02 |
| 85 | GO:0008483: transaminase activity | 1.37E-02 |
| 86 | GO:0015250: water channel activity | 1.49E-02 |
| 87 | GO:0004721: phosphoprotein phosphatase activity | 1.67E-02 |
| 88 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.73E-02 |
| 89 | GO:0030145: manganese ion binding | 1.99E-02 |
| 90 | GO:0050897: cobalt ion binding | 1.99E-02 |
| 91 | GO:0050661: NADP binding | 2.33E-02 |
| 92 | GO:0003924: GTPase activity | 2.62E-02 |
| 93 | GO:0043621: protein self-association | 2.69E-02 |
| 94 | GO:0051287: NAD binding | 2.91E-02 |
| 95 | GO:0051082: unfolded protein binding | 4.04E-02 |
| 96 | GO:0016887: ATPase activity | 4.05E-02 |
| 97 | GO:0015035: protein disulfide oxidoreductase activity | 4.13E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.90E-45 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 3.46E-26 |
| 4 | GO:0009570: chloroplast stroma | 8.80E-22 |
| 5 | GO:0009941: chloroplast envelope | 1.05E-19 |
| 6 | GO:0009534: chloroplast thylakoid | 9.09E-16 |
| 7 | GO:0009579: thylakoid | 1.24E-11 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.60E-07 |
| 9 | GO:0031977: thylakoid lumen | 1.58E-05 |
| 10 | GO:0009523: photosystem II | 5.26E-05 |
| 11 | GO:0048046: apoplast | 9.33E-05 |
| 12 | GO:0009782: photosystem I antenna complex | 1.16E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 4.32E-04 |
| 14 | GO:0042651: thylakoid membrane | 4.32E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 4.45E-04 |
| 16 | GO:0009706: chloroplast inner membrane | 6.82E-04 |
| 17 | GO:0010287: plastoglobule | 8.44E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 8.79E-04 |
| 19 | GO:0005777: peroxisome | 2.67E-03 |
| 20 | GO:0031969: chloroplast membrane | 3.05E-03 |
| 21 | GO:0030095: chloroplast photosystem II | 4.89E-03 |
| 22 | GO:0030076: light-harvesting complex | 5.29E-03 |
| 23 | GO:0009522: photosystem I | 1.04E-02 |
| 24 | GO:0010319: stromule | 1.37E-02 |
| 25 | GO:0009707: chloroplast outer membrane | 1.80E-02 |
| 26 | GO:0016020: membrane | 2.30E-02 |
| 27 | GO:0005747: mitochondrial respiratory chain complex I | 3.63E-02 |
| 28 | GO:0022626: cytosolic ribosome | 4.44E-02 |
| 29 | GO:0005623: cell | 4.83E-02 |