co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:0006412: translation	4.91E-14
4	GO:0032544: plastid translation	1.17E-12
5	GO:0042254: ribosome biogenesis	2.72E-06
6	GO:0019464: glycine decarboxylation via glycine cleavage system	2.78E-06
7	GO:0015979: photosynthesis	6.28E-06
8	GO:0010027: thylakoid membrane organization	1.84E-05
9	GO:1902458: positive regulation of stomatal opening	5.03E-05
10	GO:0043085: positive regulation of catalytic activity	5.51E-05
11	GO:0018026: peptidyl-lysine monomethylation	1.23E-04
12	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.23E-04
13	GO:0061077: chaperone-mediated protein folding	1.54E-04
14	GO:0006662: glycerol ether metabolic process	2.60E-04
15	GO:0051085: chaperone mediated protein folding requiring cofactor	3.09E-04
16	GO:0006241: CTP biosynthetic process	3.09E-04
17	GO:0006165: nucleoside diphosphate phosphorylation	3.09E-04
18	GO:0006228: UTP biosynthetic process	3.09E-04
19	GO:0009735: response to cytokinin	3.49E-04
20	GO:0006546: glycine catabolic process	4.15E-04
21	GO:0006109: regulation of carbohydrate metabolic process	4.15E-04
22	GO:0006183: GTP biosynthetic process	4.15E-04
23	GO:0045038: protein import into chloroplast thylakoid membrane	5.26E-04
24	GO:0015995: chlorophyll biosynthetic process	5.46E-04
25	GO:0009955: adaxial/abaxial pattern specification	7.68E-04
26	GO:0042026: protein refolding	7.68E-04
27	GO:1901259: chloroplast rRNA processing	7.68E-04
28	GO:0034599: cellular response to oxidative stress	7.89E-04
29	GO:0010196: nonphotochemical quenching	8.97E-04
30	GO:2000070: regulation of response to water deprivation	1.03E-03
31	GO:0015996: chlorophyll catabolic process	1.17E-03
32	GO:0007186: G-protein coupled receptor signaling pathway	1.17E-03
33	GO:0009409: response to cold	1.84E-03
34	GO:0045037: protein import into chloroplast stroma	1.96E-03
35	GO:0010207: photosystem II assembly	2.32E-03
36	GO:0009266: response to temperature stimulus	2.32E-03
37	GO:0010020: chloroplast fission	2.32E-03
38	GO:0009790: embryo development	2.61E-03
39	GO:0006636: unsaturated fatty acid biosynthetic process	2.69E-03
40	GO:0006289: nucleotide-excision repair	2.88E-03
41	GO:0007005: mitochondrion organization	3.50E-03
42	GO:0009411: response to UV	3.71E-03
43	GO:0010182: sugar mediated signaling pathway	4.60E-03
44	GO:0009658: chloroplast organization	4.73E-03
45	GO:0045454: cell redox homeostasis	7.00E-03
46	GO:0009627: systemic acquired resistance	7.40E-03
47	GO:0008219: cell death	8.24E-03
48	GO:0009817: defense response to fungus, incompatible interaction	8.24E-03
49	GO:0009813: flavonoid biosynthetic process	8.53E-03
50	GO:0009853: photorespiration	9.73E-03
51	GO:0006631: fatty acid metabolic process	1.10E-02
52	GO:0042542: response to hydrogen peroxide	1.13E-02
53	GO:0009585: red, far-red light phototransduction	1.44E-02
54	GO:0043086: negative regulation of catalytic activity	1.62E-02
55	GO:0006457: protein folding	1.99E-02
56	GO:0006633: fatty acid biosynthetic process	2.54E-02
57	GO:0055114: oxidation-reduction process	3.05E-02
58	GO:0006979: response to oxidative stress	3.14E-02
59	GO:0080167: response to karrikin	4.32E-02
60	GO:0006810: transport	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0019843: rRNA binding	3.20E-16
5	GO:0003735: structural constituent of ribosome	2.76E-14
6	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.44E-06
7	GO:0005528: FK506 binding	2.01E-06
8	GO:0008047: enzyme activator activity	4.63E-05
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.03E-05
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.76E-05
11	GO:0042389: omega-3 fatty acid desaturase activity	1.23E-04
12	GO:0051082: unfolded protein binding	1.60E-04
13	GO:0005504: fatty acid binding	2.11E-04
14	GO:0047134: protein-disulfide reductase activity	2.22E-04
15	GO:0004791: thioredoxin-disulfide reductase activity	2.81E-04
16	GO:0004550: nucleoside diphosphate kinase activity	3.09E-04
17	GO:0043023: ribosomal large subunit binding	3.09E-04
18	GO:0016851: magnesium chelatase activity	3.09E-04
19	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.67E-04
20	GO:0045430: chalcone isomerase activity	4.15E-04
21	GO:0016279: protein-lysine N-methyltransferase activity	4.15E-04
22	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.17E-03
23	GO:0044183: protein binding involved in protein folding	1.79E-03
24	GO:0015035: protein disulfide oxidoreductase activity	1.85E-03
25	GO:0031072: heat shock protein binding	2.14E-03
26	GO:0004857: enzyme inhibitor activity	2.88E-03
27	GO:0022891: substrate-specific transmembrane transporter activity	3.71E-03
28	GO:0050662: coenzyme binding	4.83E-03
29	GO:0016168: chlorophyll binding	7.12E-03
30	GO:0003723: RNA binding	2.58E-02
31	GO:0005509: calcium ion binding	2.88E-02
32	GO:0008168: methyltransferase activity	3.61E-02
33	GO:0016491: oxidoreductase activity	4.09E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.11E-33
2	GO:0009570: chloroplast stroma	1.78E-27
3	GO:0009941: chloroplast envelope	2.08E-21
4	GO:0009579: thylakoid	1.35E-19
5	GO:0009535: chloroplast thylakoid membrane	6.12E-14
6	GO:0005840: ribosome	3.87E-13
7	GO:0009543: chloroplast thylakoid lumen	1.37E-10
8	GO:0009534: chloroplast thylakoid	5.11E-10
9	GO:0031977: thylakoid lumen	2.52E-08
10	GO:0005960: glycine cleavage complex	1.44E-06
11	GO:0010319: stromule	1.52E-05
12	GO:0015934: large ribosomal subunit	3.59E-05
13	GO:0009654: photosystem II oxygen evolving complex	1.39E-04
14	GO:0015935: small ribosomal subunit	1.54E-04
15	GO:0009528: plastid inner membrane	2.11E-04
16	GO:0010007: magnesium chelatase complex	2.11E-04
17	GO:0009536: plastid	2.96E-04
18	GO:0019898: extrinsic component of membrane	3.01E-04
19	GO:0009527: plastid outer membrane	4.15E-04
20	GO:0009517: PSII associated light-harvesting complex II	4.15E-04
21	GO:0016272: prefoldin complex	7.68E-04
22	GO:0009538: photosystem I reaction center	1.03E-03
23	GO:0005763: mitochondrial small ribosomal subunit	1.32E-03
24	GO:0000312: plastid small ribosomal subunit	2.32E-03
25	GO:0030095: chloroplast photosystem II	2.32E-03
26	GO:0009532: plastid stroma	3.29E-03
27	GO:0009523: photosystem II	5.07E-03
28	GO:0031969: chloroplast membrane	5.85E-03
29	GO:0009295: nucleoid	6.33E-03
30	GO:0009707: chloroplast outer membrane	8.24E-03
31	GO:0022626: cytosolic ribosome	1.47E-02
32	GO:0009706: chloroplast inner membrane	1.84E-02
33	GO:0010287: plastoglobule	2.08E-02
34	GO:0048046: apoplast	3.16E-02
35	GO:0022627: cytosolic small ribosomal subunit	3.32E-02
36	GO:0016020: membrane	3.62E-02
37	GO:0005874: microtubule	4.22E-02
38	GO:0022625: cytosolic large ribosomal subunit	4.48E-02