co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0009451: RNA modification	5.74E-07
3	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.10E-04
4	GO:0009650: UV protection	2.78E-04
5	GO:0009102: biotin biosynthetic process	2.78E-04
6	GO:0016032: viral process	2.95E-04
7	GO:0006221: pyrimidine nucleotide biosynthetic process	3.73E-04
8	GO:0016558: protein import into peroxisome matrix	4.75E-04
9	GO:0010190: cytochrome b6f complex assembly	5.82E-04
10	GO:1901259: chloroplast rRNA processing	6.94E-04
11	GO:0045036: protein targeting to chloroplast	1.47E-03
12	GO:0009773: photosynthetic electron transport in photosystem I	1.61E-03
13	GO:0005975: carbohydrate metabolic process	1.71E-03
14	GO:0010628: positive regulation of gene expression	1.92E-03
15	GO:0010030: positive regulation of seed germination	2.25E-03
16	GO:0006863: purine nucleobase transport	2.42E-03
17	GO:0006457: protein folding	2.87E-03
18	GO:0007166: cell surface receptor signaling pathway	3.00E-03
19	GO:0009411: response to UV	3.33E-03
20	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.73E-03
21	GO:0000413: protein peptidyl-prolyl isomerization	3.93E-03
22	GO:0042631: cellular response to water deprivation	3.93E-03
23	GO:0048868: pollen tube development	4.14E-03
24	GO:0007018: microtubule-based movement	4.35E-03
25	GO:0006635: fatty acid beta-oxidation	4.77E-03
26	GO:0010193: response to ozone	4.77E-03
27	GO:0010411: xyloglucan metabolic process	6.89E-03
28	GO:0016042: lipid catabolic process	7.17E-03
29	GO:0042546: cell wall biogenesis	1.07E-02
30	GO:0006952: defense response	1.22E-02
31	GO:0010224: response to UV-B	1.32E-02
32	GO:0009793: embryo development ending in seed dormancy	1.47E-02
33	GO:0009553: embryo sac development	1.61E-02
34	GO:0009790: embryo development	2.16E-02
35	GO:0071555: cell wall organization	2.66E-02
36	GO:0009658: chloroplast organization	3.32E-02
37	GO:0042254: ribosome biogenesis	3.36E-02
38	GO:0006810: transport	3.90E-02
39	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.96E-02
40	GO:0044550: secondary metabolite biosynthetic process	4.11E-02
41	GO:0046686: response to cadmium ion	4.14E-02
42	GO:0015979: photosynthesis	4.25E-02
43	GO:0006869: lipid transport	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0042623: ATPase activity, coupled	0.00E+00
3	GO:0004519: endonuclease activity	9.83E-06
4	GO:0009041: uridylate kinase activity	2.78E-04
5	GO:0003723: RNA binding	4.09E-04
6	GO:0004462: lactoylglutathione lyase activity	5.82E-04
7	GO:0042578: phosphoric ester hydrolase activity	5.82E-04
8	GO:0008195: phosphatidate phosphatase activity	6.94E-04
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.59E-04
10	GO:0019843: rRNA binding	1.92E-03
11	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.09E-03
12	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.46E-03
13	GO:0043424: protein histidine kinase binding	2.77E-03
14	GO:0005345: purine nucleobase transmembrane transporter activity	2.77E-03
15	GO:0016788: hydrolase activity, acting on ester bonds	4.12E-03
16	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.77E-03
17	GO:0052689: carboxylic ester hydrolase activity	5.53E-03
18	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.89E-03
19	GO:0003993: acid phosphatase activity	8.99E-03
20	GO:0051539: 4 iron, 4 sulfur cluster binding	9.55E-03
21	GO:0051537: 2 iron, 2 sulfur cluster binding	1.10E-02
22	GO:0016887: ATPase activity	1.14E-02
23	GO:0003777: microtubule motor activity	1.38E-02
24	GO:0051082: unfolded protein binding	1.65E-02
25	GO:0008026: ATP-dependent helicase activity	1.72E-02
26	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.73E-02
27	GO:0016829: lyase activity	2.05E-02
28	GO:0008017: microtubule binding	2.51E-02
29	GO:0016491: oxidoreductase activity	3.50E-02
30	GO:0003729: mRNA binding	3.95E-02
31	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.46E-12
2	GO:0009543: chloroplast thylakoid lumen	8.43E-06
3	GO:0009535: chloroplast thylakoid membrane	1.16E-04
4	GO:0042646: plastid nucleoid	2.78E-04
5	GO:0009579: thylakoid	4.14E-04
6	GO:0009533: chloroplast stromal thylakoid	8.11E-04
7	GO:0009570: chloroplast stroma	1.12E-03
8	GO:0043231: intracellular membrane-bounded organelle	1.14E-03
9	GO:0042644: chloroplast nucleoid	1.19E-03
10	GO:0009508: plastid chromosome	1.92E-03
11	GO:0030095: chloroplast photosystem II	2.09E-03
12	GO:0009654: photosystem II oxygen evolving complex	2.77E-03
13	GO:0009532: plastid stroma	2.96E-03
14	GO:0005871: kinesin complex	3.73E-03
15	GO:0019898: extrinsic component of membrane	4.56E-03
16	GO:0005778: peroxisomal membrane	5.68E-03
17	GO:0009295: nucleoid	5.68E-03
18	GO:0015934: large ribosomal subunit	8.18E-03
19	GO:0031977: thylakoid lumen	9.83E-03
20	GO:0009706: chloroplast inner membrane	1.65E-02
21	GO:0005623: cell	1.97E-02
22	GO:0031225: anchored component of membrane	2.05E-02
23	GO:0005840: ribosome	2.79E-02
24	GO:0005618: cell wall	2.88E-02
25	GO:0046658: anchored component of plasma membrane	2.97E-02
26	GO:0005874: microtubule	3.78E-02