co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G24160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010202: response to low fluence red light stimulus	0.00E+00
2	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	0.00E+00
3	GO:0017012: protein-phytochromobilin linkage	0.00E+00
4	GO:0006721: terpenoid metabolic process	0.00E+00
5	GO:0042908: xenobiotic transport	0.00E+00
6	GO:0006006: glucose metabolic process	1.29E-06
7	GO:0009584: detection of visible light	1.91E-06
8	GO:0005975: carbohydrate metabolic process	1.40E-05
9	GO:0046686: response to cadmium ion	1.52E-05
10	GO:0016487: farnesol metabolic process	5.94E-05
11	GO:0006007: glucose catabolic process	5.94E-05
12	GO:0006560: proline metabolic process	5.94E-05
13	GO:0010265: SCF complex assembly	5.94E-05
14	GO:0000305: response to oxygen radical	5.94E-05
15	GO:0019388: galactose catabolic process	1.44E-04
16	GO:0010617: circadian regulation of calcium ion oscillation	1.44E-04
17	GO:0080183: response to photooxidative stress	1.44E-04
18	GO:0043100: pyrimidine nucleobase salvage	1.44E-04
19	GO:0010133: proline catabolic process to glutamate	1.44E-04
20	GO:0006096: glycolytic process	1.67E-04
21	GO:0006012: galactose metabolic process	2.34E-04
22	GO:0046034: ATP metabolic process	2.46E-04
23	GO:0080121: AMP transport	2.46E-04
24	GO:0017006: protein-tetrapyrrole linkage	2.46E-04
25	GO:1901562: response to paraquat	2.46E-04
26	GO:0030835: negative regulation of actin filament depolymerization	2.46E-04
27	GO:0010148: transpiration	3.57E-04
28	GO:0015700: arsenite transport	3.57E-04
29	GO:0010255: glucose mediated signaling pathway	3.57E-04
30	GO:0009590: detection of gravity	3.57E-04
31	GO:0006221: pyrimidine nucleotide biosynthetic process	4.78E-04
32	GO:0009649: entrainment of circadian clock	4.78E-04
33	GO:0006749: glutathione metabolic process	4.78E-04
34	GO:0015867: ATP transport	4.78E-04
35	GO:0032366: intracellular sterol transport	4.78E-04
36	GO:0044205: 'de novo' UMP biosynthetic process	4.78E-04
37	GO:0009687: abscisic acid metabolic process	4.78E-04
38	GO:0009697: salicylic acid biosynthetic process	6.05E-04
39	GO:0009117: nucleotide metabolic process	7.40E-04
40	GO:0018298: protein-chromophore linkage	7.40E-04
41	GO:0015866: ADP transport	7.40E-04
42	GO:0055085: transmembrane transport	8.06E-04
43	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	8.82E-04
44	GO:0006099: tricarboxylic acid cycle	9.67E-04
45	GO:0051693: actin filament capping	1.03E-03
46	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.03E-03
47	GO:0010374: stomatal complex development	1.03E-03
48	GO:0010161: red light signaling pathway	1.03E-03
49	GO:0005978: glycogen biosynthetic process	1.18E-03
50	GO:0006491: N-glycan processing	1.18E-03
51	GO:0048658: anther wall tapetum development	1.18E-03
52	GO:0009231: riboflavin biosynthetic process	1.18E-03
53	GO:0015996: chlorophyll catabolic process	1.35E-03
54	GO:0046685: response to arsenic-containing substance	1.52E-03
55	GO:0080144: amino acid homeostasis	1.52E-03
56	GO:0009060: aerobic respiration	1.52E-03
57	GO:0009585: red, far-red light phototransduction	1.57E-03
58	GO:0051603: proteolysis involved in cellular protein catabolic process	1.63E-03
59	GO:0009638: phototropism	1.69E-03
60	GO:0006349: regulation of gene expression by genetic imprinting	1.69E-03
61	GO:0006896: Golgi to vacuole transport	1.88E-03
62	GO:0006325: chromatin organization	1.88E-03
63	GO:0010048: vernalization response	1.88E-03
64	GO:0052544: defense response by callose deposition in cell wall	2.07E-03
65	GO:0072593: reactive oxygen species metabolic process	2.07E-03
66	GO:0048229: gametophyte development	2.07E-03
67	GO:0010102: lateral root morphogenesis	2.47E-03
68	GO:0006108: malate metabolic process	2.47E-03
69	GO:2000028: regulation of photoperiodism, flowering	2.47E-03
70	GO:0050826: response to freezing	2.47E-03
71	GO:0006094: gluconeogenesis	2.47E-03
72	GO:0009409: response to cold	2.56E-03
73	GO:0007034: vacuolar transport	2.68E-03
74	GO:0009266: response to temperature stimulus	2.68E-03
75	GO:0019853: L-ascorbic acid biosynthetic process	2.89E-03
76	GO:0009058: biosynthetic process	2.91E-03
77	GO:0009555: pollen development	3.33E-03
78	GO:0051017: actin filament bundle assembly	3.34E-03
79	GO:0015992: proton transport	3.81E-03
80	GO:0016226: iron-sulfur cluster assembly	4.05E-03
81	GO:0042391: regulation of membrane potential	5.07E-03
82	GO:0080022: primary root development	5.07E-03
83	GO:0010051: xylem and phloem pattern formation	5.07E-03
84	GO:0010118: stomatal movement	5.07E-03
85	GO:0015991: ATP hydrolysis coupled proton transport	5.07E-03
86	GO:0009960: endosperm development	5.34E-03
87	GO:0006520: cellular amino acid metabolic process	5.34E-03
88	GO:0015986: ATP synthesis coupled proton transport	5.61E-03
89	GO:0006623: protein targeting to vacuole	5.89E-03
90	GO:0019252: starch biosynthetic process	5.89E-03
91	GO:0009630: gravitropism	6.46E-03
92	GO:1901657: glycosyl compound metabolic process	6.75E-03
93	GO:0055114: oxidation-reduction process	7.01E-03
94	GO:0042742: defense response to bacterium	8.15E-03
95	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.28E-03
96	GO:0010029: regulation of seed germination	8.28E-03
97	GO:0009817: defense response to fungus, incompatible interaction	9.59E-03
98	GO:0010218: response to far red light	1.03E-02
99	GO:0016042: lipid catabolic process	1.04E-02
100	GO:0010043: response to zinc ion	1.06E-02
101	GO:0009408: response to heat	1.07E-02
102	GO:0009853: photorespiration	1.13E-02
103	GO:0009867: jasmonic acid mediated signaling pathway	1.13E-02
104	GO:0045087: innate immune response	1.13E-02
105	GO:0008152: metabolic process	1.18E-02
106	GO:0006839: mitochondrial transport	1.24E-02
107	GO:0006631: fatty acid metabolic process	1.28E-02
108	GO:0009640: photomorphogenesis	1.35E-02
109	GO:0009636: response to toxic substance	1.47E-02
110	GO:0006855: drug transmembrane transport	1.51E-02
111	GO:0031347: regulation of defense response	1.55E-02
112	GO:0009735: response to cytokinin	1.75E-02
113	GO:0009620: response to fungus	2.01E-02
114	GO:0018105: peptidyl-serine phosphorylation	2.19E-02
115	GO:0010228: vegetative to reproductive phase transition of meristem	3.28E-02
116	GO:0006508: proteolysis	3.35E-02
117	GO:0009617: response to bacterium	3.60E-02
118	GO:0071555: cell wall organization	3.86E-02
119	GO:0009733: response to auxin	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
2	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
3	GO:0004746: riboflavin synthase activity	0.00E+00
4	GO:0031517: red light photoreceptor activity	0.00E+00
5	GO:0004151: dihydroorotase activity	0.00E+00
6	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
7	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
8	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
9	GO:0015391: nucleobase:cation symporter activity	0.00E+00
10	GO:0003842: 1-pyrroline-5-carboxylate dehydrogenase activity	0.00E+00
11	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
12	GO:0047886: farnesol dehydrogenase activity	0.00E+00
13	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
14	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
15	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
16	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	0.00E+00
17	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
18	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
19	GO:0004557: alpha-galactosidase activity	7.95E-07
20	GO:0008020: G-protein coupled photoreceptor activity	7.95E-07
21	GO:0052692: raffinose alpha-galactosidase activity	7.95E-07
22	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.91E-06
23	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.58E-06
24	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	9.58E-06
25	GO:0005507: copper ion binding	1.62E-05
26	GO:0004034: aldose 1-epimerase activity	2.51E-05
27	GO:0080079: cellobiose glucosidase activity	5.94E-05
28	GO:0070401: NADP+ binding	5.94E-05
29	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	5.94E-05
30	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	5.94E-05
31	GO:0010209: vacuolar sorting signal binding	5.94E-05
32	GO:0080047: GDP-L-galactose phosphorylase activity	5.94E-05
33	GO:1990841: promoter-specific chromatin binding	5.94E-05
34	GO:0071992: phytochelatin transmembrane transporter activity	5.94E-05
35	GO:0004673: protein histidine kinase activity	5.94E-05
36	GO:0031516: far-red light photoreceptor activity	5.94E-05
37	GO:0016229: steroid dehydrogenase activity	5.94E-05
38	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	5.94E-05
39	GO:0080048: GDP-D-glucose phosphorylase activity	5.94E-05
40	GO:0046480: galactolipid galactosyltransferase activity	5.94E-05
41	GO:0004347: glucose-6-phosphate isomerase activity	5.94E-05
42	GO:0008559: xenobiotic-transporting ATPase activity	7.05E-05
43	GO:0000155: phosphorelay sensor kinase activity	9.56E-05
44	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	1.44E-04
45	GO:0004614: phosphoglucomutase activity	1.44E-04
46	GO:0004362: glutathione-disulfide reductase activity	1.44E-04
47	GO:0009883: red or far-red light photoreceptor activity	1.44E-04
48	GO:0004047: aminomethyltransferase activity	1.44E-04
49	GO:0005516: calmodulin binding	1.72E-04
50	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.24E-04
51	GO:0035529: NADH pyrophosphatase activity	3.57E-04
52	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3.57E-04
53	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	4.78E-04
54	GO:0080122: AMP transmembrane transporter activity	6.05E-04
55	GO:0016615: malate dehydrogenase activity	7.40E-04
56	GO:0080046: quercetin 4'-O-glucosyltransferase activity	7.40E-04
57	GO:0050897: cobalt ion binding	8.51E-04
58	GO:0030060: L-malate dehydrogenase activity	8.82E-04
59	GO:0005261: cation channel activity	8.82E-04
60	GO:0005347: ATP transmembrane transporter activity	8.82E-04
61	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	8.82E-04
62	GO:0015217: ADP transmembrane transporter activity	8.82E-04
63	GO:0009881: photoreceptor activity	1.03E-03
64	GO:0005085: guanyl-nucleotide exchange factor activity	1.03E-03
65	GO:0050661: NADP binding	1.05E-03
66	GO:0004033: aldo-keto reductase (NADP) activity	1.18E-03
67	GO:0005509: calcium ion binding	1.43E-03
68	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.69E-03
69	GO:0008234: cysteine-type peptidase activity	1.73E-03
70	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.91E-03
71	GO:0008378: galactosyltransferase activity	2.27E-03
72	GO:0031072: heat shock protein binding	2.47E-03
73	GO:0008266: poly(U) RNA binding	2.68E-03
74	GO:0030553: cGMP binding	2.89E-03
75	GO:0030552: cAMP binding	2.89E-03
76	GO:0030170: pyridoxal phosphate binding	3.07E-03
77	GO:0005216: ion channel activity	3.57E-03
78	GO:0004298: threonine-type endopeptidase activity	3.81E-03
79	GO:0003727: single-stranded RNA binding	4.55E-03
80	GO:0018024: histone-lysine N-methyltransferase activity	4.81E-03
81	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.82E-03
82	GO:0030551: cyclic nucleotide binding	5.07E-03
83	GO:0005249: voltage-gated potassium channel activity	5.07E-03
84	GO:0050662: coenzyme binding	5.61E-03
85	GO:0016853: isomerase activity	5.61E-03
86	GO:0016788: hydrolase activity, acting on ester bonds	5.98E-03
87	GO:0004197: cysteine-type endopeptidase activity	6.46E-03
88	GO:0051015: actin filament binding	6.75E-03
89	GO:0052689: carboxylic ester hydrolase activity	8.03E-03
90	GO:0009931: calcium-dependent protein serine/threonine kinase activity	8.60E-03
91	GO:0030247: polysaccharide binding	8.92E-03
92	GO:0004683: calmodulin-dependent protein kinase activity	8.92E-03
93	GO:0004871: signal transducer activity	9.11E-03
94	GO:0042803: protein homodimerization activity	9.11E-03
95	GO:0008236: serine-type peptidase activity	9.25E-03
96	GO:0030145: manganese ion binding	1.06E-02
97	GO:0016491: oxidoreductase activity	1.16E-02
98	GO:0008422: beta-glucosidase activity	1.20E-02
99	GO:0004185: serine-type carboxypeptidase activity	1.35E-02
100	GO:0051287: NAD binding	1.55E-02
101	GO:0016298: lipase activity	1.71E-02
102	GO:0016787: hydrolase activity	2.14E-02
103	GO:0051082: unfolded protein binding	2.15E-02
104	GO:0016740: transferase activity	2.33E-02
105	GO:0030246: carbohydrate binding	2.57E-02
106	GO:0004252: serine-type endopeptidase activity	2.72E-02
107	GO:0005524: ATP binding	3.08E-02
108	GO:0042802: identical protein binding	3.76E-02
109	GO:0000287: magnesium ion binding	4.27E-02
110	GO:0050660: flavin adenine dinucleotide binding	4.80E-02
111	GO:0008233: peptidase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005773: vacuole	1.69E-06
2	GO:0005759: mitochondrial matrix	2.89E-05
3	GO:0005764: lysosome	1.10E-04
4	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.25E-04
5	GO:0005774: vacuolar membrane	1.46E-04
6	GO:0031519: PcG protein complex	2.46E-04
7	GO:0033180: proton-transporting V-type ATPase, V1 domain	3.57E-04
8	GO:0009526: plastid envelope	4.78E-04
9	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	4.78E-04
10	GO:0010319: stromule	5.12E-04
11	GO:0005746: mitochondrial respiratory chain	6.05E-04
12	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	7.40E-04
13	GO:0048046: apoplast	7.50E-04
14	GO:0005829: cytosol	8.30E-04
15	GO:0000325: plant-type vacuole	8.51E-04
16	GO:0031359: integral component of chloroplast outer membrane	1.03E-03
17	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.18E-03
18	GO:0009501: amyloplast	1.18E-03
19	GO:0045273: respiratory chain complex II	1.18E-03
20	GO:0005677: chromatin silencing complex	1.35E-03
21	GO:0016604: nuclear body	1.69E-03
22	GO:0030665: clathrin-coated vesicle membrane	1.69E-03
23	GO:0017119: Golgi transport complex	1.88E-03
24	GO:0005747: mitochondrial respiratory chain complex I	1.91E-03
25	GO:0009536: plastid	2.21E-03
26	GO:0005750: mitochondrial respiratory chain complex III	2.68E-03
27	GO:0045271: respiratory chain complex I	3.57E-03
28	GO:0005839: proteasome core complex	3.81E-03
29	GO:0005770: late endosome	5.34E-03
30	GO:0005783: endoplasmic reticulum	9.30E-03
31	GO:0009707: chloroplast outer membrane	9.59E-03
32	GO:0009507: chloroplast	1.16E-02
33	GO:0031902: late endosome membrane	1.28E-02
34	GO:0005618: cell wall	1.30E-02
35	GO:0005887: integral component of plasma membrane	1.46E-02
36	GO:0005730: nucleolus	1.59E-02
37	GO:0031966: mitochondrial membrane	1.59E-02
38	GO:0000502: proteasome complex	1.67E-02
39	GO:0009941: chloroplast envelope	1.69E-02
40	GO:0016607: nuclear speck	1.93E-02
41	GO:0005777: peroxisome	2.20E-02
42	GO:0005739: mitochondrion	2.23E-02
43	GO:0005886: plasma membrane	2.31E-02
44	GO:0010287: plastoglobule	2.43E-02
45	GO:0005623: cell	2.57E-02
46	GO:0005576: extracellular region	2.90E-02
47	GO:0005615: extracellular space	3.44E-02