co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G24040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045740: positive regulation of DNA replication	0.00E+00
2	GO:0046040: IMP metabolic process	0.00E+00
3	GO:0048870: cell motility	0.00E+00
4	GO:0015822: ornithine transport	0.00E+00
5	GO:0006167: AMP biosynthetic process	0.00E+00
6	GO:0032350: regulation of hormone metabolic process	0.00E+00
7	GO:0036172: thiamine salvage	0.00E+00
8	GO:0045930: negative regulation of mitotic cell cycle	0.00E+00
9	GO:0046460: neutral lipid biosynthetic process	0.00E+00
10	GO:0046085: adenosine metabolic process	0.00E+00
11	GO:0009092: homoserine metabolic process	0.00E+00
12	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
13	GO:0044205: 'de novo' UMP biosynthetic process	2.72E-05
14	GO:0032259: methylation	8.42E-05
15	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.20E-04
16	GO:0000066: mitochondrial ornithine transport	1.91E-04
17	GO:0016031: tRNA import into mitochondrion	1.91E-04
18	GO:0009240: isopentenyl diphosphate biosynthetic process	1.91E-04
19	GO:0006526: arginine biosynthetic process	1.91E-04
20	GO:0033206: meiotic cytokinesis	1.91E-04
21	GO:0044419: interspecies interaction between organisms	4.29E-04
22	GO:0044208: 'de novo' AMP biosynthetic process	4.29E-04
23	GO:0016560: protein import into peroxisome matrix, docking	4.29E-04
24	GO:0007163: establishment or maintenance of cell polarity	4.29E-04
25	GO:0006432: phenylalanyl-tRNA aminoacylation	4.29E-04
26	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.29E-04
27	GO:0009220: pyrimidine ribonucleotide biosynthetic process	4.29E-04
28	GO:0050992: dimethylallyl diphosphate biosynthetic process	4.29E-04
29	GO:0006839: mitochondrial transport	6.15E-04
30	GO:0010476: gibberellin mediated signaling pathway	6.99E-04
31	GO:0010325: raffinose family oligosaccharide biosynthetic process	6.99E-04
32	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	6.99E-04
33	GO:0006591: ornithine metabolic process	6.99E-04
34	GO:0009653: anatomical structure morphogenesis	6.99E-04
35	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	6.99E-04
36	GO:0071492: cellular response to UV-A	6.99E-04
37	GO:0009116: nucleoside metabolic process	7.65E-04
38	GO:0009152: purine ribonucleotide biosynthetic process	9.97E-04
39	GO:0006241: CTP biosynthetic process	9.97E-04
40	GO:0009399: nitrogen fixation	9.97E-04
41	GO:0006165: nucleoside diphosphate phosphorylation	9.97E-04
42	GO:0006228: UTP biosynthetic process	9.97E-04
43	GO:0006012: galactose metabolic process	1.09E-03
44	GO:0071486: cellular response to high light intensity	1.32E-03
45	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.32E-03
46	GO:0009765: photosynthesis, light harvesting	1.32E-03
47	GO:0071249: cellular response to nitrate	1.32E-03
48	GO:0006183: GTP biosynthetic process	1.32E-03
49	GO:0045727: positive regulation of translation	1.32E-03
50	GO:0006221: pyrimidine nucleotide biosynthetic process	1.32E-03
51	GO:0006625: protein targeting to peroxisome	1.32E-03
52	GO:0008295: spermidine biosynthetic process	1.32E-03
53	GO:0006749: glutathione metabolic process	1.32E-03
54	GO:0009956: radial pattern formation	1.32E-03
55	GO:0009165: nucleotide biosynthetic process	1.32E-03
56	GO:0006542: glutamine biosynthetic process	1.32E-03
57	GO:0006808: regulation of nitrogen utilization	1.32E-03
58	GO:0080022: primary root development	1.38E-03
59	GO:0009229: thiamine diphosphate biosynthetic process	1.68E-03
60	GO:0006544: glycine metabolic process	1.68E-03
61	GO:0030041: actin filament polymerization	1.68E-03
62	GO:0016070: RNA metabolic process	2.07E-03
63	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.07E-03
64	GO:0031053: primary miRNA processing	2.07E-03
65	GO:0000741: karyogamy	2.07E-03
66	GO:0009228: thiamine biosynthetic process	2.07E-03
67	GO:0010090: trichome morphogenesis	2.07E-03
68	GO:0033365: protein localization to organelle	2.07E-03
69	GO:0009117: nucleotide metabolic process	2.07E-03
70	GO:0006574: valine catabolic process	2.07E-03
71	GO:0006014: D-ribose metabolic process	2.07E-03
72	GO:0006563: L-serine metabolic process	2.07E-03
73	GO:0034389: lipid particle organization	2.49E-03
74	GO:2000033: regulation of seed dormancy process	2.49E-03
75	GO:0009099: valine biosynthetic process	2.49E-03
76	GO:0009088: threonine biosynthetic process	2.49E-03
77	GO:0048444: floral organ morphogenesis	2.49E-03
78	GO:0007050: cell cycle arrest	2.93E-03
79	GO:0006826: iron ion transport	2.93E-03
80	GO:0000082: G1/S transition of mitotic cell cycle	2.93E-03
81	GO:0045292: mRNA cis splicing, via spliceosome	3.40E-03
82	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	3.40E-03
83	GO:0042255: ribosome assembly	3.40E-03
84	GO:0009704: de-etiolation	3.40E-03
85	GO:0000028: ribosomal small subunit assembly	3.40E-03
86	GO:0045010: actin nucleation	3.40E-03
87	GO:0022900: electron transport chain	3.88E-03
88	GO:0010233: phloem transport	3.88E-03
89	GO:0009097: isoleucine biosynthetic process	3.88E-03
90	GO:0010100: negative regulation of photomorphogenesis	3.88E-03
91	GO:0048527: lateral root development	3.95E-03
92	GO:0098656: anion transmembrane transport	4.40E-03
93	GO:0009245: lipid A biosynthetic process	4.40E-03
94	GO:0019432: triglyceride biosynthetic process	4.40E-03
95	GO:0048507: meristem development	4.40E-03
96	GO:0009056: catabolic process	4.40E-03
97	GO:0000902: cell morphogenesis	4.40E-03
98	GO:0035999: tetrahydrofolate interconversion	4.93E-03
99	GO:0009098: leucine biosynthetic process	4.93E-03
100	GO:0009086: methionine biosynthetic process	4.93E-03
101	GO:1900865: chloroplast RNA modification	4.93E-03
102	GO:0031425: chloroplast RNA processing	4.93E-03
103	GO:0008356: asymmetric cell division	4.93E-03
104	GO:0009658: chloroplast organization	5.61E-03
105	GO:0072593: reactive oxygen species metabolic process	6.06E-03
106	GO:0010152: pollen maturation	6.66E-03
107	GO:0006094: gluconeogenesis	7.28E-03
108	GO:0010102: lateral root morphogenesis	7.28E-03
109	GO:0050826: response to freezing	7.28E-03
110	GO:0010020: chloroplast fission	7.91E-03
111	GO:0007031: peroxisome organization	8.57E-03
112	GO:0010039: response to iron ion	8.57E-03
113	GO:0006071: glycerol metabolic process	9.25E-03
114	GO:0034976: response to endoplasmic reticulum stress	9.25E-03
115	GO:0009863: salicylic acid mediated signaling pathway	9.94E-03
116	GO:0010187: negative regulation of seed germination	9.94E-03
117	GO:0006289: nucleotide-excision repair	9.94E-03
118	GO:2000377: regulation of reactive oxygen species metabolic process	9.94E-03
119	GO:0008299: isoprenoid biosynthetic process	1.07E-02
120	GO:0006874: cellular calcium ion homeostasis	1.07E-02
121	GO:0046686: response to cadmium ion	1.12E-02
122	GO:0010431: seed maturation	1.14E-02
123	GO:0006281: DNA repair	1.21E-02
124	GO:0016226: iron-sulfur cluster assembly	1.21E-02
125	GO:0007005: mitochondrion organization	1.21E-02
126	GO:0048443: stamen development	1.37E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	1.53E-02
128	GO:0006520: cellular amino acid metabolic process	1.62E-02
129	GO:0010197: polar nucleus fusion	1.62E-02
130	GO:0055072: iron ion homeostasis	1.79E-02
131	GO:0080156: mitochondrial mRNA modification	1.88E-02
132	GO:0032502: developmental process	1.97E-02
133	GO:1901657: glycosyl compound metabolic process	2.06E-02
134	GO:0009739: response to gibberellin	2.08E-02
135	GO:0016126: sterol biosynthetic process	2.44E-02
136	GO:0010029: regulation of seed germination	2.54E-02
137	GO:0015031: protein transport	2.60E-02
138	GO:0042128: nitrate assimilation	2.64E-02
139	GO:0006974: cellular response to DNA damage stimulus	2.64E-02
140	GO:0015995: chlorophyll biosynthetic process	2.74E-02
141	GO:0006888: ER to Golgi vesicle-mediated transport	2.74E-02
142	GO:0042254: ribosome biogenesis	2.93E-02
143	GO:0010311: lateral root formation	3.05E-02
144	GO:0009407: toxin catabolic process	3.16E-02
145	GO:0010218: response to far red light	3.16E-02
146	GO:0006810: transport	3.21E-02
147	GO:0048366: leaf development	3.38E-02
148	GO:0009867: jasmonic acid mediated signaling pathway	3.49E-02
149	GO:0009926: auxin polar transport	4.18E-02
150	GO:0045454: cell redox homeostasis	4.25E-02
151	GO:0000154: rRNA modification	4.54E-02
152	GO:0009636: response to toxic substance	4.54E-02
153	GO:0009965: leaf morphogenesis	4.54E-02
154	GO:0042538: hyperosmotic salinity response	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004019: adenylosuccinate synthase activity	0.00E+00
2	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
3	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
4	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
5	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
6	GO:0004151: dihydroorotase activity	0.00E+00
7	GO:0004588: orotate phosphoribosyltransferase activity	0.00E+00
8	GO:0004590: orotidine-5'-phosphate decarboxylase activity	0.00E+00
9	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
10	GO:0008168: methyltransferase activity	1.77E-05
11	GO:0004034: aldose 1-epimerase activity	1.53E-04
12	GO:0004413: homoserine kinase activity	1.91E-04
13	GO:0046480: galactolipid galactosyltransferase activity	1.91E-04
14	GO:0080079: cellobiose glucosidase activity	1.91E-04
15	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	1.91E-04
16	GO:0004766: spermidine synthase activity	4.29E-04
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.29E-04
18	GO:0000064: L-ornithine transmembrane transporter activity	4.29E-04
19	GO:0004826: phenylalanine-tRNA ligase activity	4.29E-04
20	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.29E-04
21	GO:0016743: carboxyl- or carbamoyltransferase activity	4.29E-04
22	GO:1990585: hydroxyproline O-arabinosyltransferase activity	4.29E-04
23	GO:0010331: gibberellin binding	4.29E-04
24	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	6.99E-04
25	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.99E-04
26	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	6.99E-04
27	GO:0032403: protein complex binding	6.99E-04
28	GO:0008649: rRNA methyltransferase activity	6.99E-04
29	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	9.97E-04
30	GO:0052655: L-valine transaminase activity	9.97E-04
31	GO:0004749: ribose phosphate diphosphokinase activity	9.97E-04
32	GO:0000254: C-4 methylsterol oxidase activity	9.97E-04
33	GO:0035529: NADH pyrophosphatase activity	9.97E-04
34	GO:0052656: L-isoleucine transaminase activity	9.97E-04
35	GO:0004550: nucleoside diphosphate kinase activity	9.97E-04
36	GO:0000339: RNA cap binding	9.97E-04
37	GO:0052654: L-leucine transaminase activity	9.97E-04
38	GO:0005319: lipid transporter activity	1.32E-03
39	GO:0010011: auxin binding	1.32E-03
40	GO:0004084: branched-chain-amino-acid transaminase activity	1.32E-03
41	GO:0008080: N-acetyltransferase activity	1.48E-03
42	GO:0004372: glycine hydroxymethyltransferase activity	1.68E-03
43	GO:0004356: glutamate-ammonia ligase activity	1.68E-03
44	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.07E-03
45	GO:0031177: phosphopantetheine binding	2.07E-03
46	GO:0004747: ribokinase activity	2.49E-03
47	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.49E-03
48	GO:0000035: acyl binding	2.49E-03
49	GO:0004144: diacylglycerol O-acyltransferase activity	2.49E-03
50	GO:0008143: poly(A) binding	2.93E-03
51	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.40E-03
52	GO:0004525: ribonuclease III activity	3.40E-03
53	GO:0000989: transcription factor activity, transcription factor binding	4.40E-03
54	GO:0003723: RNA binding	5.14E-03
55	GO:0008047: enzyme activator activity	5.48E-03
56	GO:0051537: 2 iron, 2 sulfur cluster binding	6.02E-03
57	GO:0043621: protein self-association	6.02E-03
58	GO:0003824: catalytic activity	6.08E-03
59	GO:0008378: galactosyltransferase activity	6.66E-03
60	GO:0000049: tRNA binding	6.66E-03
61	GO:0051287: NAD binding	6.74E-03
62	GO:0015266: protein channel activity	7.28E-03
63	GO:0005315: inorganic phosphate transmembrane transporter activity	7.28E-03
64	GO:0005217: intracellular ligand-gated ion channel activity	8.57E-03
65	GO:0004970: ionotropic glutamate receptor activity	8.57E-03
66	GO:0022857: transmembrane transporter activity	1.01E-02
67	GO:0004298: threonine-type endopeptidase activity	1.14E-02
68	GO:0033612: receptor serine/threonine kinase binding	1.14E-02
69	GO:0019843: rRNA binding	1.34E-02
70	GO:0008514: organic anion transmembrane transporter activity	1.37E-02
71	GO:0003756: protein disulfide isomerase activity	1.37E-02
72	GO:0003727: single-stranded RNA binding	1.37E-02
73	GO:0005102: receptor binding	1.45E-02
74	GO:0030170: pyridoxal phosphate binding	1.49E-02
75	GO:0016853: isomerase activity	1.70E-02
76	GO:0016597: amino acid binding	2.34E-02
77	GO:0042802: identical protein binding	2.36E-02
78	GO:0016168: chlorophyll binding	2.54E-02
79	GO:0005515: protein binding	2.65E-02
80	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.95E-02
81	GO:0050897: cobalt ion binding	3.27E-02
82	GO:0003697: single-stranded DNA binding	3.49E-02
83	GO:0008422: beta-glucosidase activity	3.71E-02
84	GO:0050661: NADP binding	3.83E-02
85	GO:0005507: copper ion binding	3.88E-02
86	GO:0004364: glutathione transferase activity	4.06E-02
87	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.66E-02
88	GO:0003735: structural constituent of ribosome	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0055037: recycling endosome	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0009507: chloroplast	7.64E-07
4	GO:0009536: plastid	3.70E-06
5	GO:0005829: cytosol	1.01E-04
6	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.91E-04
7	GO:1990429: peroxisomal importomer complex	1.91E-04
8	GO:0005845: mRNA cap binding complex	1.91E-04
9	GO:0005846: nuclear cap binding complex	4.29E-04
10	GO:0000439: core TFIIH complex	6.99E-04
11	GO:0005739: mitochondrion	1.01E-03
12	GO:0009706: chloroplast inner membrane	1.61E-03
13	GO:0032588: trans-Golgi network membrane	2.07E-03
14	GO:0031209: SCAR complex	2.07E-03
15	GO:0005743: mitochondrial inner membrane	2.35E-03
16	GO:0005801: cis-Golgi network	2.49E-03
17	GO:0031359: integral component of chloroplast outer membrane	2.93E-03
18	GO:0009570: chloroplast stroma	3.30E-03
19	GO:0009707: chloroplast outer membrane	3.42E-03
20	GO:0019773: proteasome core complex, alpha-subunit complex	3.88E-03
21	GO:0005811: lipid particle	3.88E-03
22	GO:0009941: chloroplast envelope	3.97E-03
23	GO:0005763: mitochondrial small ribosomal subunit	4.40E-03
24	GO:0048471: perinuclear region of cytoplasm	6.06E-03
25	GO:0005769: early endosome	9.25E-03
26	GO:0005758: mitochondrial intermembrane space	9.94E-03
27	GO:0070469: respiratory chain	1.07E-02
28	GO:0005839: proteasome core complex	1.14E-02
29	GO:0015935: small ribosomal subunit	1.14E-02
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.37E-02
31	GO:0005773: vacuole	1.41E-02
32	GO:0005770: late endosome	1.62E-02
33	GO:0009523: photosystem II	1.79E-02
34	GO:0005840: ribosome	1.95E-02
35	GO:0071944: cell periphery	2.06E-02
36	GO:0005778: peroxisomal membrane	2.25E-02
37	GO:0022626: cytosolic ribosome	2.37E-02
38	GO:0005777: peroxisome	2.97E-02
39	GO:0005789: endoplasmic reticulum membrane	3.40E-02
40	GO:0005802: trans-Golgi network	4.48E-02
41	GO:0005856: cytoskeleton	4.54E-02