GO Enrichment Analysis of Co-expressed Genes with
AT3G23990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 2 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 3 | GO:0071433: cell wall repair | 0.00E+00 |
| 4 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 7 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 8 | GO:0006364: rRNA processing | 6.18E-17 |
| 9 | GO:0010162: seed dormancy process | 2.76E-06 |
| 10 | GO:0010501: RNA secondary structure unwinding | 3.59E-05 |
| 11 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.95E-05 |
| 12 | GO:0006412: translation | 6.16E-05 |
| 13 | GO:0006169: adenosine salvage | 1.14E-04 |
| 14 | GO:0031120: snRNA pseudouridine synthesis | 1.14E-04 |
| 15 | GO:0031118: rRNA pseudouridine synthesis | 1.14E-04 |
| 16 | GO:0006177: GMP biosynthetic process | 1.14E-04 |
| 17 | GO:0000494: box C/D snoRNA 3'-end processing | 1.14E-04 |
| 18 | GO:0043985: histone H4-R3 methylation | 1.14E-04 |
| 19 | GO:1990258: histone glutamine methylation | 1.14E-04 |
| 20 | GO:0009451: RNA modification | 1.77E-04 |
| 21 | GO:0080009: mRNA methylation | 2.65E-04 |
| 22 | GO:0034470: ncRNA processing | 2.65E-04 |
| 23 | GO:0009967: positive regulation of signal transduction | 2.65E-04 |
| 24 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.65E-04 |
| 25 | GO:0042254: ribosome biogenesis | 3.61E-04 |
| 26 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.83E-04 |
| 27 | GO:0051302: regulation of cell division | 4.22E-04 |
| 28 | GO:0045604: regulation of epidermal cell differentiation | 4.38E-04 |
| 29 | GO:0009294: DNA mediated transformation | 5.51E-04 |
| 30 | GO:0016569: covalent chromatin modification | 6.15E-04 |
| 31 | GO:0007276: gamete generation | 6.29E-04 |
| 32 | GO:0009553: embryo sac development | 6.39E-04 |
| 33 | GO:0006479: protein methylation | 8.35E-04 |
| 34 | GO:1900864: mitochondrial RNA modification | 8.35E-04 |
| 35 | GO:0046345: abscisic acid catabolic process | 8.35E-04 |
| 36 | GO:0042273: ribosomal large subunit biogenesis | 8.35E-04 |
| 37 | GO:0044209: AMP salvage | 1.05E-03 |
| 38 | GO:0031167: rRNA methylation | 1.05E-03 |
| 39 | GO:0001731: formation of translation preinitiation complex | 1.29E-03 |
| 40 | GO:0016554: cytidine to uridine editing | 1.29E-03 |
| 41 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.29E-03 |
| 42 | GO:0000741: karyogamy | 1.29E-03 |
| 43 | GO:0048444: floral organ morphogenesis | 1.54E-03 |
| 44 | GO:0010077: maintenance of inflorescence meristem identity | 1.54E-03 |
| 45 | GO:0006400: tRNA modification | 1.81E-03 |
| 46 | GO:0045995: regulation of embryonic development | 1.81E-03 |
| 47 | GO:0001558: regulation of cell growth | 2.39E-03 |
| 48 | GO:0001510: RNA methylation | 2.39E-03 |
| 49 | GO:2000024: regulation of leaf development | 2.70E-03 |
| 50 | GO:0007338: single fertilization | 2.70E-03 |
| 51 | GO:1900865: chloroplast RNA modification | 3.02E-03 |
| 52 | GO:0006457: protein folding | 3.10E-03 |
| 53 | GO:0030422: production of siRNA involved in RNA interference | 3.36E-03 |
| 54 | GO:0045892: negative regulation of transcription, DNA-templated | 3.80E-03 |
| 55 | GO:0010582: floral meristem determinacy | 4.06E-03 |
| 56 | GO:0006446: regulation of translational initiation | 4.81E-03 |
| 57 | GO:0006541: glutamine metabolic process | 4.81E-03 |
| 58 | GO:0010030: positive regulation of seed germination | 5.21E-03 |
| 59 | GO:0000027: ribosomal large subunit assembly | 6.03E-03 |
| 60 | GO:0007005: mitochondrion organization | 7.34E-03 |
| 61 | GO:0071215: cellular response to abscisic acid stimulus | 7.79E-03 |
| 62 | GO:0009735: response to cytokinin | 8.97E-03 |
| 63 | GO:0008033: tRNA processing | 9.23E-03 |
| 64 | GO:0000413: protein peptidyl-prolyl isomerization | 9.23E-03 |
| 65 | GO:0010197: polar nucleus fusion | 9.73E-03 |
| 66 | GO:0048825: cotyledon development | 1.08E-02 |
| 67 | GO:0080156: mitochondrial mRNA modification | 1.13E-02 |
| 68 | GO:0016032: viral process | 1.18E-02 |
| 69 | GO:0046686: response to cadmium ion | 1.19E-02 |
| 70 | GO:0009567: double fertilization forming a zygote and endosperm | 1.29E-02 |
| 71 | GO:0016049: cell growth | 1.70E-02 |
| 72 | GO:0048527: lateral root development | 1.96E-02 |
| 73 | GO:0032259: methylation | 2.46E-02 |
| 74 | GO:0048364: root development | 2.67E-02 |
| 75 | GO:0000154: rRNA modification | 2.72E-02 |
| 76 | GO:0048367: shoot system development | 3.57E-02 |
| 77 | GO:0009651: response to salt stress | 3.72E-02 |
| 78 | GO:0006396: RNA processing | 4.06E-02 |
| 79 | GO:0000398: mRNA splicing, via spliceosome | 4.40E-02 |
| 80 | GO:0009555: pollen development | 4.53E-02 |
| 81 | GO:0009058: biosynthetic process | 4.84E-02 |
| 82 | GO:0009845: seed germination | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003922: GMP synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0003723: RNA binding | 1.38E-18 |
| 4 | GO:0008026: ATP-dependent helicase activity | 1.43E-07 |
| 5 | GO:0004407: histone deacetylase activity | 1.89E-07 |
| 6 | GO:0030515: snoRNA binding | 4.62E-07 |
| 7 | GO:0000166: nucleotide binding | 5.08E-07 |
| 8 | GO:0003735: structural constituent of ribosome | 1.22E-06 |
| 9 | GO:0019843: rRNA binding | 9.66E-05 |
| 10 | GO:1990259: histone-glutamine methyltransferase activity | 1.14E-04 |
| 11 | GO:0042134: rRNA primary transcript binding | 1.14E-04 |
| 12 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.14E-04 |
| 13 | GO:0004001: adenosine kinase activity | 1.14E-04 |
| 14 | GO:0004004: ATP-dependent RNA helicase activity | 1.26E-04 |
| 15 | GO:0050897: cobalt ion binding | 1.79E-04 |
| 16 | GO:0043021: ribonucleoprotein complex binding | 2.65E-04 |
| 17 | GO:0003938: IMP dehydrogenase activity | 2.65E-04 |
| 18 | GO:0005078: MAP-kinase scaffold activity | 2.65E-04 |
| 19 | GO:0008649: rRNA methyltransferase activity | 4.38E-04 |
| 20 | GO:0070181: small ribosomal subunit rRNA binding | 4.38E-04 |
| 21 | GO:0016462: pyrophosphatase activity | 1.29E-03 |
| 22 | GO:0031369: translation initiation factor binding | 1.29E-03 |
| 23 | GO:0008235: metalloexopeptidase activity | 1.81E-03 |
| 24 | GO:0003746: translation elongation factor activity | 2.13E-03 |
| 25 | GO:0008168: methyltransferase activity | 2.15E-03 |
| 26 | GO:0008173: RNA methyltransferase activity | 2.39E-03 |
| 27 | GO:0003729: mRNA binding | 2.91E-03 |
| 28 | GO:0044183: protein binding involved in protein folding | 3.71E-03 |
| 29 | GO:0000049: tRNA binding | 4.06E-03 |
| 30 | GO:0009982: pseudouridine synthase activity | 4.43E-03 |
| 31 | GO:0003924: GTPase activity | 4.85E-03 |
| 32 | GO:0004519: endonuclease activity | 5.40E-03 |
| 33 | GO:0016787: hydrolase activity | 5.51E-03 |
| 34 | GO:0005524: ATP binding | 9.33E-03 |
| 35 | GO:0008483: transaminase activity | 1.35E-02 |
| 36 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.70E-02 |
| 37 | GO:0003676: nucleic acid binding | 1.71E-02 |
| 38 | GO:0005525: GTP binding | 1.89E-02 |
| 39 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.16E-02 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.79E-02 |
| 41 | GO:0051082: unfolded protein binding | 3.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 6.11E-31 |
| 5 | GO:0032040: small-subunit processome | 1.67E-12 |
| 6 | GO:0031428: box C/D snoRNP complex | 2.79E-05 |
| 7 | GO:0030687: preribosome, large subunit precursor | 5.34E-05 |
| 8 | GO:0005840: ribosome | 6.45E-05 |
| 9 | GO:0005618: cell wall | 1.14E-04 |
| 10 | GO:0015030: Cajal body | 1.31E-04 |
| 11 | GO:0005634: nucleus | 2.17E-04 |
| 12 | GO:0005829: cytosol | 2.27E-04 |
| 13 | GO:0070545: PeBoW complex | 2.65E-04 |
| 14 | GO:0022627: cytosolic small ribosomal subunit | 2.72E-04 |
| 15 | GO:0005747: mitochondrial respiratory chain complex I | 5.47E-04 |
| 16 | GO:0005834: heterotrimeric G-protein complex | 5.69E-04 |
| 17 | GO:0031429: box H/ACA snoRNP complex | 6.29E-04 |
| 18 | GO:0016282: eukaryotic 43S preinitiation complex | 1.29E-03 |
| 19 | GO:0030529: intracellular ribonucleoprotein complex | 1.30E-03 |
| 20 | GO:0033290: eukaryotic 48S preinitiation complex | 1.54E-03 |
| 21 | GO:0016363: nuclear matrix | 1.54E-03 |
| 22 | GO:0022626: cytosolic ribosome | 1.96E-03 |
| 23 | GO:0034399: nuclear periphery | 2.09E-03 |
| 24 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.54E-03 |
| 25 | GO:0022625: cytosolic large ribosomal subunit | 3.16E-03 |
| 26 | GO:0005852: eukaryotic translation initiation factor 3 complex | 3.71E-03 |
| 27 | GO:0005774: vacuolar membrane | 3.89E-03 |
| 28 | GO:0005739: mitochondrion | 4.30E-03 |
| 29 | GO:0019013: viral nucleocapsid | 4.43E-03 |
| 30 | GO:0015935: small ribosomal subunit | 6.89E-03 |
| 31 | GO:0005759: mitochondrial matrix | 8.20E-03 |
| 32 | GO:0019898: extrinsic component of membrane | 1.08E-02 |
| 33 | GO:0016592: mediator complex | 1.18E-02 |
| 34 | GO:0015934: large ribosomal subunit | 1.96E-02 |
| 35 | GO:0009506: plasmodesma | 2.05E-02 |
| 36 | GO:0009536: plastid | 3.16E-02 |
| 37 | GO:0005681: spliceosomal complex | 3.49E-02 |
| 38 | GO:0016607: nuclear speck | 3.57E-02 |
| 39 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.23E-02 |
| 40 | GO:0005654: nucleoplasm | 4.58E-02 |
| 41 | GO:0009543: chloroplast thylakoid lumen | 4.67E-02 |