co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0008298: intracellular mRNA localization	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0019685: photosynthesis, dark reaction	0.00E+00
4	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0016123: xanthophyll biosynthetic process	4.42E-07
8	GO:0048564: photosystem I assembly	3.74E-06
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.93E-05
10	GO:0016120: carotene biosynthetic process	5.65E-05
11	GO:0009451: RNA modification	1.18E-04
12	GO:1904966: positive regulation of vitamin E biosynthetic process	2.22E-04
13	GO:1904964: positive regulation of phytol biosynthetic process	2.22E-04
14	GO:0042371: vitamin K biosynthetic process	2.22E-04
15	GO:0006436: tryptophanyl-tRNA aminoacylation	2.22E-04
16	GO:0010362: negative regulation of anion channel activity by blue light	2.22E-04
17	GO:0071482: cellular response to light stimulus	2.40E-04
18	GO:0009657: plastid organization	2.40E-04
19	GO:0006352: DNA-templated transcription, initiation	4.69E-04
20	GO:0080005: photosystem stoichiometry adjustment	4.95E-04
21	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.95E-04
22	GO:0048255: mRNA stabilization	4.95E-04
23	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.95E-04
24	GO:0006435: threonyl-tRNA aminoacylation	4.95E-04
25	GO:0018298: protein-chromophore linkage	5.09E-04
26	GO:0009767: photosynthetic electron transport chain	6.09E-04
27	GO:0006013: mannose metabolic process	8.05E-04
28	GO:0002230: positive regulation of defense response to virus by host	8.05E-04
29	GO:1901672: positive regulation of systemic acquired resistance	8.05E-04
30	GO:0007017: microtubule-based process	1.03E-03
31	GO:0033014: tetrapyrrole biosynthetic process	1.15E-03
32	GO:2001141: regulation of RNA biosynthetic process	1.15E-03
33	GO:0009067: aspartate family amino acid biosynthetic process	1.15E-03
34	GO:0090307: mitotic spindle assembly	1.15E-03
35	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.15E-03
36	GO:0009793: embryo development ending in seed dormancy	1.25E-03
37	GO:0009658: chloroplast organization	1.46E-03
38	GO:0031122: cytoplasmic microtubule organization	1.53E-03
39	GO:0071483: cellular response to blue light	1.53E-03
40	GO:0009902: chloroplast relocation	1.53E-03
41	GO:0042274: ribosomal small subunit biogenesis	1.53E-03
42	GO:0031935: regulation of chromatin silencing	1.53E-03
43	GO:0009765: photosynthesis, light harvesting	1.53E-03
44	GO:0006221: pyrimidine nucleotide biosynthetic process	1.53E-03
45	GO:0008033: tRNA processing	1.71E-03
46	GO:0006282: regulation of DNA repair	1.95E-03
47	GO:0034052: positive regulation of plant-type hypersensitive response	1.95E-03
48	GO:0009643: photosynthetic acclimation	2.40E-03
49	GO:0032973: amino acid export	2.40E-03
50	GO:0000741: karyogamy	2.40E-03
51	GO:0015979: photosynthesis	2.48E-03
52	GO:0017148: negative regulation of translation	2.89E-03
53	GO:0010189: vitamin E biosynthetic process	2.89E-03
54	GO:0009088: threonine biosynthetic process	2.89E-03
55	GO:0015977: carbon fixation	2.89E-03
56	GO:0006401: RNA catabolic process	3.40E-03
57	GO:0043090: amino acid import	3.40E-03
58	GO:1900056: negative regulation of leaf senescence	3.40E-03
59	GO:0009816: defense response to bacterium, incompatible interaction	3.45E-03
60	GO:0015995: chlorophyll biosynthetic process	3.84E-03
61	GO:0006402: mRNA catabolic process	3.94E-03
62	GO:0042255: ribosome assembly	3.94E-03
63	GO:0006353: DNA-templated transcription, termination	3.94E-03
64	GO:0032544: plastid translation	4.51E-03
65	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.11E-03
66	GO:0080144: amino acid homeostasis	5.11E-03
67	GO:0006783: heme biosynthetic process	5.11E-03
68	GO:0000373: Group II intron splicing	5.11E-03
69	GO:0009051: pentose-phosphate shunt, oxidative branch	5.11E-03
70	GO:0006098: pentose-phosphate shunt	5.11E-03
71	GO:0009637: response to blue light	5.38E-03
72	GO:1900426: positive regulation of defense response to bacterium	5.74E-03
73	GO:0009638: phototropism	5.74E-03
74	GO:0006779: porphyrin-containing compound biosynthetic process	5.74E-03
75	GO:0009098: leucine biosynthetic process	5.74E-03
76	GO:0010380: regulation of chlorophyll biosynthetic process	5.74E-03
77	GO:0031425: chloroplast RNA processing	5.74E-03
78	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.38E-03
79	GO:0045036: protein targeting to chloroplast	6.38E-03
80	GO:0006949: syncytium formation	6.38E-03
81	GO:0010114: response to red light	6.93E-03
82	GO:0009089: lysine biosynthetic process via diaminopimelate	7.06E-03
83	GO:0009773: photosynthetic electron transport in photosystem I	7.06E-03
84	GO:0006415: translational termination	7.06E-03
85	GO:0045037: protein import into chloroplast stroma	7.76E-03
86	GO:0010628: positive regulation of gene expression	8.48E-03
87	GO:0006006: glucose metabolic process	8.48E-03
88	GO:0009725: response to hormone	8.48E-03
89	GO:0006094: gluconeogenesis	8.48E-03
90	GO:0010207: photosystem II assembly	9.23E-03
91	GO:0019253: reductive pentose-phosphate cycle	9.23E-03
92	GO:0006364: rRNA processing	9.36E-03
93	GO:0090351: seedling development	1.00E-02
94	GO:0006863: purine nucleobase transport	1.08E-02
95	GO:0080147: root hair cell development	1.16E-02
96	GO:0006418: tRNA aminoacylation for protein translation	1.24E-02
97	GO:0006396: RNA processing	1.38E-02
98	GO:0016226: iron-sulfur cluster assembly	1.42E-02
99	GO:0080092: regulation of pollen tube growth	1.42E-02
100	GO:0006810: transport	1.48E-02
101	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.51E-02
102	GO:0016117: carotenoid biosynthetic process	1.70E-02
103	GO:0055114: oxidation-reduction process	1.74E-02
104	GO:0010118: stomatal movement	1.79E-02
105	GO:0009958: positive gravitropism	1.89E-02
106	GO:0010197: polar nucleus fusion	1.89E-02
107	GO:0048868: pollen tube development	1.89E-02
108	GO:0007018: microtubule-based movement	1.99E-02
109	GO:0008654: phospholipid biosynthetic process	2.09E-02
110	GO:0009791: post-embryonic development	2.09E-02
111	GO:0010193: response to ozone	2.19E-02
112	GO:0031047: gene silencing by RNA	2.30E-02
113	GO:0016032: viral process	2.30E-02
114	GO:0019761: glucosinolate biosynthetic process	2.30E-02
115	GO:0032502: developmental process	2.30E-02
116	GO:0007264: small GTPase mediated signal transduction	2.30E-02
117	GO:0007623: circadian rhythm	2.31E-02
118	GO:0009828: plant-type cell wall loosening	2.52E-02
119	GO:0051607: defense response to virus	2.74E-02
120	GO:0000910: cytokinesis	2.74E-02
121	GO:0001666: response to hypoxia	2.85E-02
122	GO:0016126: sterol biosynthetic process	2.85E-02
123	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.97E-02
124	GO:0048481: plant ovule development	3.45E-02
125	GO:0009817: defense response to fungus, incompatible interaction	3.45E-02
126	GO:0000160: phosphorelay signal transduction system	3.57E-02
127	GO:0010218: response to far red light	3.70E-02
128	GO:0006811: ion transport	3.70E-02
129	GO:0007568: aging	3.82E-02
130	GO:0009910: negative regulation of flower development	3.82E-02
131	GO:0009853: photorespiration	4.08E-02
132	GO:0055085: transmembrane transport	4.41E-02
133	GO:0080167: response to karrikin	4.42E-02
134	GO:0046777: protein autophosphorylation	4.73E-02
135	GO:0009744: response to sucrose	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	1.93E-05
6	GO:0001053: plastid sigma factor activity	3.53E-05
7	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.53E-05
8	GO:0016987: sigma factor activity	3.53E-05
9	GO:0004519: endonuclease activity	1.91E-04
10	GO:0048038: quinone binding	2.19E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.22E-04
12	GO:0004830: tryptophan-tRNA ligase activity	2.22E-04
13	GO:0030941: chloroplast targeting sequence binding	2.22E-04
14	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.22E-04
15	GO:0004451: isocitrate lyase activity	2.22E-04
16	GO:0004325: ferrochelatase activity	2.22E-04
17	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.69E-04
18	GO:0004829: threonine-tRNA ligase activity	4.95E-04
19	GO:0003862: 3-isopropylmalate dehydrogenase activity	4.95E-04
20	GO:0032947: protein complex scaffold	8.05E-04
21	GO:0004148: dihydrolipoyl dehydrogenase activity	8.05E-04
22	GO:0016149: translation release factor activity, codon specific	1.15E-03
23	GO:0009882: blue light photoreceptor activity	1.15E-03
24	GO:0043023: ribosomal large subunit binding	1.15E-03
25	GO:0016984: ribulose-bisphosphate carboxylase activity	1.15E-03
26	GO:0004072: aspartate kinase activity	1.15E-03
27	GO:0009041: uridylate kinase activity	1.15E-03
28	GO:0022891: substrate-specific transmembrane transporter activity	1.35E-03
29	GO:0003723: RNA binding	1.44E-03
30	GO:0003727: single-stranded RNA binding	1.46E-03
31	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.53E-03
32	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.53E-03
33	GO:0051861: glycolipid binding	1.53E-03
34	GO:0043015: gamma-tubulin binding	1.53E-03
35	GO:0043495: protein anchor	1.53E-03
36	GO:0051011: microtubule minus-end binding	1.95E-03
37	GO:0010181: FMN binding	1.97E-03
38	GO:0004605: phosphatidate cytidylyltransferase activity	2.40E-03
39	GO:0004332: fructose-bisphosphate aldolase activity	2.40E-03
40	GO:0019843: rRNA binding	2.83E-03
41	GO:0004559: alpha-mannosidase activity	2.89E-03
42	GO:0008195: phosphatidate phosphatase activity	2.89E-03
43	GO:0015631: tubulin binding	2.89E-03
44	GO:0019899: enzyme binding	3.40E-03
45	GO:0016168: chlorophyll binding	3.45E-03
46	GO:0016491: oxidoreductase activity	3.76E-03
47	GO:0003747: translation release factor activity	5.11E-03
48	GO:0000155: phosphorelay sensor kinase activity	8.48E-03
49	GO:0000175: 3'-5'-exoribonuclease activity	8.48E-03
50	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.23E-03
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.36E-03
52	GO:0003690: double-stranded DNA binding	9.69E-03
53	GO:0003777: microtubule motor activity	1.04E-02
54	GO:0003887: DNA-directed DNA polymerase activity	1.08E-02
55	GO:0051536: iron-sulfur cluster binding	1.16E-02
56	GO:0005528: FK506 binding	1.16E-02
57	GO:0005345: purine nucleobase transmembrane transporter activity	1.24E-02
58	GO:0004812: aminoacyl-tRNA ligase activity	1.70E-02
59	GO:0008080: N-acetyltransferase activity	1.89E-02
60	GO:0004872: receptor activity	2.09E-02
61	GO:0004518: nuclease activity	2.30E-02
62	GO:0005200: structural constituent of cytoskeleton	2.63E-02
63	GO:0008483: transaminase activity	2.63E-02
64	GO:0016597: amino acid binding	2.74E-02
65	GO:0016887: ATPase activity	2.78E-02
66	GO:0042802: identical protein binding	2.94E-02
67	GO:0008168: methyltransferase activity	3.45E-02
68	GO:0050897: cobalt ion binding	3.82E-02
69	GO:0003993: acid phosphatase activity	4.21E-02
70	GO:0050661: NADP binding	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.13E-29
2	GO:0009535: chloroplast thylakoid membrane	8.16E-11
3	GO:0009570: chloroplast stroma	4.86E-09
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.46E-08
5	GO:0030286: dynein complex	3.53E-05
6	GO:0009543: chloroplast thylakoid lumen	5.62E-05
7	GO:0031969: chloroplast membrane	6.15E-05
8	GO:0008274: gamma-tubulin ring complex	4.95E-04
9	GO:0030095: chloroplast photosystem II	6.86E-04
10	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	8.05E-04
11	GO:0010007: magnesium chelatase complex	8.05E-04
12	GO:0042651: thylakoid membrane	1.03E-03
13	GO:0009654: photosystem II oxygen evolving complex	1.03E-03
14	GO:0000923: equatorial microtubule organizing center	1.15E-03
15	GO:0055035: plastid thylakoid membrane	1.95E-03
16	GO:0009523: photosystem II	2.12E-03
17	GO:0019898: extrinsic component of membrane	2.12E-03
18	GO:0031359: integral component of chloroplast outer membrane	3.40E-03
19	GO:0046930: pore complex	4.51E-03
20	GO:0000922: spindle pole	5.11E-03
21	GO:0016324: apical plasma membrane	6.38E-03
22	GO:0031977: thylakoid lumen	6.39E-03
23	GO:0009941: chloroplast envelope	6.71E-03
24	GO:0009508: plastid chromosome	8.48E-03
25	GO:0005875: microtubule associated complex	1.08E-02
26	GO:0009505: plant-type cell wall	1.13E-02
27	GO:0009579: thylakoid	1.15E-02
28	GO:0005871: kinesin complex	1.70E-02
29	GO:0043231: intracellular membrane-bounded organelle	1.81E-02
30	GO:0009295: nucleoid	2.63E-02
31	GO:0009536: plastid	3.40E-02
32	GO:0009707: chloroplast outer membrane	3.45E-02
33	GO:0005874: microtubule	4.28E-02