co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016118: carotenoid catabolic process	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:0015717: triose phosphate transport	0.00E+00
6	GO:0048512: circadian behavior	0.00E+00
7	GO:0000023: maltose metabolic process	0.00E+00
8	GO:0015979: photosynthesis	8.23E-12
9	GO:0009773: photosynthetic electron transport in photosystem I	1.88E-08
10	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.79E-07
11	GO:0006000: fructose metabolic process	1.82E-06
12	GO:0005983: starch catabolic process	3.04E-06
13	GO:0010600: regulation of auxin biosynthetic process	8.22E-06
14	GO:0010021: amylopectin biosynthetic process	8.22E-06
15	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.96E-05
16	GO:0010928: regulation of auxin mediated signaling pathway	5.25E-05
17	GO:0006002: fructose 6-phosphate metabolic process	6.66E-05
18	GO:0080093: regulation of photorespiration	9.50E-05
19	GO:0031998: regulation of fatty acid beta-oxidation	9.50E-05
20	GO:0034337: RNA folding	9.50E-05
21	GO:0000025: maltose catabolic process	9.50E-05
22	GO:0005982: starch metabolic process	1.00E-04
23	GO:0006094: gluconeogenesis	1.88E-04
24	GO:0005986: sucrose biosynthetic process	1.88E-04
25	GO:0009629: response to gravity	2.24E-04
26	GO:0016560: protein import into peroxisome matrix, docking	2.24E-04
27	GO:0016124: xanthophyll catabolic process	2.24E-04
28	GO:0005976: polysaccharide metabolic process	2.24E-04
29	GO:0007154: cell communication	2.24E-04
30	GO:0090342: regulation of cell aging	2.24E-04
31	GO:0097054: L-glutamate biosynthetic process	2.24E-04
32	GO:0031648: protein destabilization	2.24E-04
33	GO:0016121: carotene catabolic process	2.24E-04
34	GO:0009644: response to high light intensity	2.30E-04
35	GO:0009768: photosynthesis, light harvesting in photosystem I	3.32E-04
36	GO:0006518: peptide metabolic process	3.73E-04
37	GO:0035436: triose phosphate transmembrane transport	3.73E-04
38	GO:0010017: red or far-red light signaling pathway	4.00E-04
39	GO:0006537: glutamate biosynthetic process	5.37E-04
40	GO:0006515: misfolded or incompletely synthesized protein catabolic process	5.37E-04
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.37E-04
42	GO:1902358: sulfate transmembrane transport	5.37E-04
43	GO:0019252: starch biosynthetic process	6.82E-04
44	GO:0051205: protein insertion into membrane	7.14E-04
45	GO:0015713: phosphoglycerate transport	7.14E-04
46	GO:0006021: inositol biosynthetic process	7.14E-04
47	GO:0010109: regulation of photosynthesis	7.14E-04
48	GO:0019676: ammonia assimilation cycle	7.14E-04
49	GO:0051322: anaphase	7.14E-04
50	GO:0016120: carotene biosynthetic process	9.02E-04
51	GO:0045038: protein import into chloroplast thylakoid membrane	9.02E-04
52	GO:0006097: glyoxylate cycle	9.02E-04
53	GO:0009913: epidermal cell differentiation	1.10E-03
54	GO:0010190: cytochrome b6f complex assembly	1.10E-03
55	GO:0009643: photosynthetic acclimation	1.10E-03
56	GO:0009635: response to herbicide	1.10E-03
57	GO:0042549: photosystem II stabilization	1.10E-03
58	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.10E-03
59	GO:0000470: maturation of LSU-rRNA	1.10E-03
60	GO:0009735: response to cytokinin	1.26E-03
61	GO:1901259: chloroplast rRNA processing	1.31E-03
62	GO:0030488: tRNA methylation	1.31E-03
63	GO:0018298: protein-chromophore linkage	1.33E-03
64	GO:0010196: nonphotochemical quenching	1.54E-03
65	GO:0008272: sulfate transport	1.54E-03
66	GO:0009769: photosynthesis, light harvesting in photosystem II	1.54E-03
67	GO:0009645: response to low light intensity stimulus	1.54E-03
68	GO:0010161: red light signaling pathway	1.54E-03
69	GO:0006605: protein targeting	1.78E-03
70	GO:0009704: de-etiolation	1.78E-03
71	GO:0009231: riboflavin biosynthetic process	1.78E-03
72	GO:0005978: glycogen biosynthetic process	1.78E-03
73	GO:0017004: cytochrome complex assembly	2.03E-03
74	GO:0010099: regulation of photomorphogenesis	2.03E-03
75	GO:0051865: protein autoubiquitination	2.29E-03
76	GO:0042761: very long-chain fatty acid biosynthetic process	2.56E-03
77	GO:0048829: root cap development	2.85E-03
78	GO:0009585: red, far-red light phototransduction	2.89E-03
79	GO:0009073: aromatic amino acid family biosynthetic process	3.14E-03
80	GO:0009750: response to fructose	3.14E-03
81	GO:0016485: protein processing	3.14E-03
82	GO:0045037: protein import into chloroplast stroma	3.44E-03
83	GO:0010102: lateral root morphogenesis	3.76E-03
84	GO:0010628: positive regulation of gene expression	3.76E-03
85	GO:0006108: malate metabolic process	3.76E-03
86	GO:0019253: reductive pentose-phosphate cycle	4.08E-03
87	GO:0009266: response to temperature stimulus	4.08E-03
88	GO:0009624: response to nematode	4.10E-03
89	GO:0005985: sucrose metabolic process	4.41E-03
90	GO:0010025: wax biosynthetic process	4.75E-03
91	GO:0019915: lipid storage	5.83E-03
92	GO:0035428: hexose transmembrane transport	6.20E-03
93	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.20E-03
94	GO:0009693: ethylene biosynthetic process	6.58E-03
95	GO:0040007: growth	6.58E-03
96	GO:0006284: base-excision repair	6.98E-03
97	GO:0007623: circadian rhythm	7.06E-03
98	GO:0016117: carotenoid biosynthetic process	7.38E-03
99	GO:0042335: cuticle development	7.79E-03
100	GO:0046323: glucose import	8.21E-03
101	GO:0006814: sodium ion transport	8.63E-03
102	GO:0009646: response to absence of light	8.63E-03
103	GO:0048825: cotyledon development	9.06E-03
104	GO:0008654: phospholipid biosynthetic process	9.06E-03
105	GO:0000302: response to reactive oxygen species	9.51E-03
106	GO:0010090: trichome morphogenesis	1.04E-02
107	GO:0009658: chloroplast organization	1.09E-02
108	GO:0051607: defense response to virus	1.18E-02
109	GO:0000910: cytokinesis	1.18E-02
110	GO:0010027: thylakoid membrane organization	1.23E-02
111	GO:0015995: chlorophyll biosynthetic process	1.38E-02
112	GO:0016311: dephosphorylation	1.43E-02
113	GO:0000160: phosphorelay signal transduction system	1.54E-02
114	GO:0009407: toxin catabolic process	1.59E-02
115	GO:0009834: plant-type secondary cell wall biogenesis	1.59E-02
116	GO:0045454: cell redox homeostasis	1.63E-02
117	GO:0048527: lateral root development	1.65E-02
118	GO:0010119: regulation of stomatal movement	1.65E-02
119	GO:0009853: photorespiration	1.76E-02
120	GO:0034599: cellular response to oxidative stress	1.81E-02
121	GO:0006099: tricarboxylic acid cycle	1.81E-02
122	GO:0042542: response to hydrogen peroxide	2.05E-02
123	GO:0009744: response to sucrose	2.10E-02
124	GO:0008152: metabolic process	2.22E-02
125	GO:0009636: response to toxic substance	2.29E-02
126	GO:0006855: drug transmembrane transport	2.35E-02
127	GO:0009409: response to cold	2.64E-02
128	GO:0006810: transport	2.92E-02
129	GO:0006396: RNA processing	3.42E-02
130	GO:0009416: response to light stimulus	3.56E-02
131	GO:0045893: positive regulation of transcription, DNA-templated	4.08E-02
132	GO:0009845: seed germination	4.15E-02
133	GO:0042744: hydrogen peroxide catabolic process	4.30E-02
134	GO:0016036: cellular response to phosphate starvation	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0016166: phytoene dehydrogenase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
4	GO:0005363: maltose transmembrane transporter activity	0.00E+00
5	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.79E-07
6	GO:2001070: starch binding	2.08E-05
7	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	9.50E-05
8	GO:0004134: 4-alpha-glucanotransferase activity	9.50E-05
9	GO:0016041: glutamate synthase (ferredoxin) activity	9.50E-05
10	GO:0004512: inositol-3-phosphate synthase activity	2.24E-04
11	GO:0008967: phosphoglycolate phosphatase activity	2.24E-04
12	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.24E-04
13	GO:0010297: heteropolysaccharide binding	2.24E-04
14	GO:0033201: alpha-1,4-glucan synthase activity	2.24E-04
15	GO:0031409: pigment binding	2.70E-04
16	GO:0071917: triose-phosphate transmembrane transporter activity	3.73E-04
17	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.73E-04
18	GO:0043169: cation binding	3.73E-04
19	GO:0004373: glycogen (starch) synthase activity	3.73E-04
20	GO:0016851: magnesium chelatase activity	5.37E-04
21	GO:0009011: starch synthase activity	7.14E-04
22	GO:0015120: phosphoglycerate transmembrane transporter activity	7.14E-04
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.14E-04
24	GO:0051538: 3 iron, 4 sulfur cluster binding	9.02E-04
25	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	9.02E-04
26	GO:0008725: DNA-3-methyladenine glycosylase activity	9.02E-04
27	GO:0016168: chlorophyll binding	1.09E-03
28	GO:0004130: cytochrome-c peroxidase activity	1.10E-03
29	GO:0016615: malate dehydrogenase activity	1.10E-03
30	GO:0030060: L-malate dehydrogenase activity	1.31E-03
31	GO:0008173: RNA methyltransferase activity	2.03E-03
32	GO:0008271: secondary active sulfate transmembrane transporter activity	2.03E-03
33	GO:0005515: protein binding	2.33E-03
34	GO:0015293: symporter activity	2.42E-03
35	GO:0015116: sulfate transmembrane transporter activity	3.44E-03
36	GO:0004022: alcohol dehydrogenase (NAD) activity	3.76E-03
37	GO:0005315: inorganic phosphate transmembrane transporter activity	3.76E-03
38	GO:0019843: rRNA binding	5.12E-03
39	GO:0004176: ATP-dependent peptidase activity	5.83E-03
40	GO:0015144: carbohydrate transmembrane transporter activity	6.12E-03
41	GO:0005351: sugar:proton symporter activity	6.90E-03
42	GO:0008514: organic anion transmembrane transporter activity	6.98E-03
43	GO:0008536: Ran GTPase binding	8.21E-03
44	GO:0005355: glucose transmembrane transporter activity	8.63E-03
45	GO:0048038: quinone binding	9.51E-03
46	GO:0000156: phosphorelay response regulator activity	1.04E-02
47	GO:0016597: amino acid binding	1.18E-02
48	GO:0008236: serine-type peptidase activity	1.43E-02
49	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.49E-02
50	GO:0004222: metalloendopeptidase activity	1.59E-02
51	GO:0003746: translation elongation factor activity	1.76E-02
52	GO:0004364: glutathione transferase activity	2.05E-02
53	GO:0043621: protein self-association	2.23E-02
54	GO:0005198: structural molecule activity	2.29E-02
55	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.00E-02
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.00E-02
57	GO:0004252: serine-type endopeptidase activity	4.23E-02
58	GO:0008565: protein transporter activity	4.46E-02
59	GO:0016787: hydrolase activity	4.65E-02
60	GO:0015297: antiporter activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0042579: microbody	0.00E+00
4	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
5	GO:0009534: chloroplast thylakoid	9.99E-30
6	GO:0009507: chloroplast	1.87E-20
7	GO:0009535: chloroplast thylakoid membrane	2.38E-16
8	GO:0009941: chloroplast envelope	1.64E-12
9	GO:0009579: thylakoid	1.24E-09
10	GO:0009570: chloroplast stroma	2.42E-09
11	GO:0010287: plastoglobule	2.81E-06
12	GO:0042651: thylakoid membrane	1.02E-05
13	GO:0009501: amyloplast	5.25E-05
14	GO:0009538: photosystem I reaction center	5.25E-05
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.24E-05
16	GO:0009782: photosystem I antenna complex	9.50E-05
17	GO:0031977: thylakoid lumen	1.85E-04
18	GO:0043036: starch grain	2.24E-04
19	GO:0030076: light-harvesting complex	2.41E-04
20	GO:0010007: magnesium chelatase complex	3.73E-04
21	GO:0009509: chromoplast	3.73E-04
22	GO:0005782: peroxisomal matrix	3.73E-04
23	GO:0009522: photosystem I	6.38E-04
24	GO:0009543: chloroplast thylakoid lumen	6.48E-04
25	GO:0009523: photosystem II	6.82E-04
26	GO:0055035: plastid thylakoid membrane	9.02E-04
27	GO:0042644: chloroplast nucleoid	2.29E-03
28	GO:0032040: small-subunit processome	3.44E-03
29	GO:0009508: plastid chromosome	3.76E-03
30	GO:0009574: preprophase band	3.76E-03
31	GO:0030095: chloroplast photosystem II	4.08E-03
32	GO:0009706: chloroplast inner membrane	4.10E-03
33	GO:0005623: cell	5.26E-03
34	GO:0009654: photosystem II oxygen evolving complex	5.46E-03
35	GO:0019898: extrinsic component of membrane	9.06E-03
36	GO:0016020: membrane	1.07E-02
37	GO:0009295: nucleoid	1.14E-02
38	GO:0010319: stromule	1.14E-02
39	GO:0031969: chloroplast membrane	1.36E-02
40	GO:0005840: ribosome	1.91E-02
41	GO:0009524: phragmoplast	4.07E-02
42	GO:0005777: peroxisome	4.08E-02
43	GO:0005759: mitochondrial matrix	4.61E-02