GO Enrichment Analysis of Co-expressed Genes with
AT3G23620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 8 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 9 | GO:0097250: mitochondrial respiratory chain supercomplex assembly | 0.00E+00 |
| 10 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 11 | GO:0006364: rRNA processing | 3.14E-19 |
| 12 | GO:0006412: translation | 2.65E-11 |
| 13 | GO:0042254: ribosome biogenesis | 8.74E-11 |
| 14 | GO:0009553: embryo sac development | 2.19E-08 |
| 15 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.53E-07 |
| 16 | GO:0000028: ribosomal small subunit assembly | 1.89E-06 |
| 17 | GO:0010162: seed dormancy process | 7.09E-06 |
| 18 | GO:0042273: ribosomal large subunit biogenesis | 2.20E-05 |
| 19 | GO:0009561: megagametogenesis | 6.48E-05 |
| 20 | GO:0006169: adenosine salvage | 1.69E-04 |
| 21 | GO:0006407: rRNA export from nucleus | 1.69E-04 |
| 22 | GO:0031120: snRNA pseudouridine synthesis | 1.69E-04 |
| 23 | GO:0000469: cleavage involved in rRNA processing | 1.69E-04 |
| 24 | GO:0031118: rRNA pseudouridine synthesis | 1.69E-04 |
| 25 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.69E-04 |
| 26 | GO:0030490: maturation of SSU-rRNA | 1.69E-04 |
| 27 | GO:0000494: box C/D snoRNA 3'-end processing | 1.69E-04 |
| 28 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.69E-04 |
| 29 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.69E-04 |
| 30 | GO:2000232: regulation of rRNA processing | 1.69E-04 |
| 31 | GO:0043985: histone H4-R3 methylation | 1.69E-04 |
| 32 | GO:1990258: histone glutamine methylation | 1.69E-04 |
| 33 | GO:0030187: melatonin biosynthetic process | 3.83E-04 |
| 34 | GO:0080009: mRNA methylation | 3.83E-04 |
| 35 | GO:0034470: ncRNA processing | 3.83E-04 |
| 36 | GO:0045039: protein import into mitochondrial inner membrane | 6.25E-04 |
| 37 | GO:0045604: regulation of epidermal cell differentiation | 6.25E-04 |
| 38 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.49E-04 |
| 39 | GO:0009855: determination of bilateral symmetry | 8.93E-04 |
| 40 | GO:0007276: gamete generation | 8.93E-04 |
| 41 | GO:0009294: DNA mediated transformation | 9.28E-04 |
| 42 | GO:0010501: RNA secondary structure unwinding | 1.17E-03 |
| 43 | GO:0000460: maturation of 5.8S rRNA | 1.18E-03 |
| 44 | GO:0006479: protein methylation | 1.18E-03 |
| 45 | GO:0046345: abscisic acid catabolic process | 1.18E-03 |
| 46 | GO:0042274: ribosomal small subunit biogenesis | 1.18E-03 |
| 47 | GO:0016569: covalent chromatin modification | 1.21E-03 |
| 48 | GO:0010197: polar nucleus fusion | 1.26E-03 |
| 49 | GO:0044209: AMP salvage | 1.50E-03 |
| 50 | GO:0000380: alternative mRNA splicing, via spliceosome | 1.50E-03 |
| 51 | GO:0010375: stomatal complex patterning | 1.50E-03 |
| 52 | GO:0031167: rRNA methylation | 1.50E-03 |
| 53 | GO:0000741: karyogamy | 1.85E-03 |
| 54 | GO:0000470: maturation of LSU-rRNA | 1.85E-03 |
| 55 | GO:0009423: chorismate biosynthetic process | 2.22E-03 |
| 56 | GO:0048444: floral organ morphogenesis | 2.22E-03 |
| 57 | GO:0010077: maintenance of inflorescence meristem identity | 2.22E-03 |
| 58 | GO:0010374: stomatal complex development | 2.61E-03 |
| 59 | GO:0045995: regulation of embryonic development | 2.61E-03 |
| 60 | GO:0080186: developmental vegetative growth | 2.61E-03 |
| 61 | GO:0042255: ribosome assembly | 3.02E-03 |
| 62 | GO:0022900: electron transport chain | 3.46E-03 |
| 63 | GO:0001510: RNA methylation | 3.46E-03 |
| 64 | GO:2000024: regulation of leaf development | 3.91E-03 |
| 65 | GO:0000387: spliceosomal snRNP assembly | 4.38E-03 |
| 66 | GO:0030422: production of siRNA involved in RNA interference | 4.87E-03 |
| 67 | GO:0051555: flavonol biosynthetic process | 4.87E-03 |
| 68 | GO:0009073: aromatic amino acid family biosynthetic process | 5.38E-03 |
| 69 | GO:0006913: nucleocytoplasmic transport | 5.38E-03 |
| 70 | GO:0010582: floral meristem determinacy | 5.91E-03 |
| 71 | GO:0006626: protein targeting to mitochondrion | 6.46E-03 |
| 72 | GO:0006108: malate metabolic process | 6.46E-03 |
| 73 | GO:0045892: negative regulation of transcription, DNA-templated | 7.60E-03 |
| 74 | GO:0010030: positive regulation of seed germination | 7.60E-03 |
| 75 | GO:0006406: mRNA export from nucleus | 8.81E-03 |
| 76 | GO:0032259: methylation | 9.21E-03 |
| 77 | GO:0051302: regulation of cell division | 9.44E-03 |
| 78 | GO:0007005: mitochondrion organization | 1.08E-02 |
| 79 | GO:0009693: ethylene biosynthetic process | 1.14E-02 |
| 80 | GO:0070417: cellular response to cold | 1.28E-02 |
| 81 | GO:0008033: tRNA processing | 1.36E-02 |
| 82 | GO:0009960: endosperm development | 1.43E-02 |
| 83 | GO:0048825: cotyledon development | 1.58E-02 |
| 84 | GO:0009793: embryo development ending in seed dormancy | 1.64E-02 |
| 85 | GO:0016032: viral process | 1.74E-02 |
| 86 | GO:0010468: regulation of gene expression | 1.86E-02 |
| 87 | GO:0006974: cellular response to DNA damage stimulus | 2.33E-02 |
| 88 | GO:0016049: cell growth | 2.51E-02 |
| 89 | GO:0008219: cell death | 2.61E-02 |
| 90 | GO:0048527: lateral root development | 2.89E-02 |
| 91 | GO:0006099: tricarboxylic acid cycle | 3.18E-02 |
| 92 | GO:0000154: rRNA modification | 4.01E-02 |
| 93 | GO:0009809: lignin biosynthetic process | 4.57E-02 |
| 94 | GO:0006417: regulation of translation | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030755: quercetin 3-O-methyltransferase activity | 0.00E+00 |
| 2 | GO:0030744: luteolin O-methyltransferase activity | 0.00E+00 |
| 3 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 4 | GO:0033799: myricetin 3'-O-methyltransferase activity | 0.00E+00 |
| 5 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 6 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 7 | GO:0047763: caffeate O-methyltransferase activity | 0.00E+00 |
| 8 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 9 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 10 | GO:0003723: RNA binding | 1.17E-15 |
| 11 | GO:0003735: structural constituent of ribosome | 7.11E-15 |
| 12 | GO:0000166: nucleotide binding | 2.62E-13 |
| 13 | GO:0030515: snoRNA binding | 7.02E-09 |
| 14 | GO:0004407: histone deacetylase activity | 6.47E-07 |
| 15 | GO:0043021: ribonucleoprotein complex binding | 1.38E-06 |
| 16 | GO:0070181: small ribosomal subunit rRNA binding | 5.12E-06 |
| 17 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.50E-06 |
| 18 | GO:0001054: RNA polymerase I activity | 9.21E-06 |
| 19 | GO:0008026: ATP-dependent helicase activity | 1.54E-05 |
| 20 | GO:0004001: adenosine kinase activity | 1.69E-04 |
| 21 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.69E-04 |
| 22 | GO:0017096: acetylserotonin O-methyltransferase activity | 1.69E-04 |
| 23 | GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H | 1.69E-04 |
| 24 | GO:1990259: histone-glutamine methyltransferase activity | 1.69E-04 |
| 25 | GO:0042134: rRNA primary transcript binding | 1.69E-04 |
| 26 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.69E-04 |
| 27 | GO:0001055: RNA polymerase II activity | 2.33E-04 |
| 28 | GO:0001056: RNA polymerase III activity | 3.66E-04 |
| 29 | GO:0008649: rRNA methyltransferase activity | 6.25E-04 |
| 30 | GO:0048027: mRNA 5'-UTR binding | 8.93E-04 |
| 31 | GO:0016615: malate dehydrogenase activity | 1.85E-03 |
| 32 | GO:0030060: L-malate dehydrogenase activity | 2.22E-03 |
| 33 | GO:0004004: ATP-dependent RNA helicase activity | 2.61E-03 |
| 34 | GO:0008135: translation factor activity, RNA binding | 3.46E-03 |
| 35 | GO:0003746: translation elongation factor activity | 3.65E-03 |
| 36 | GO:0008168: methyltransferase activity | 4.30E-03 |
| 37 | GO:0003676: nucleic acid binding | 5.63E-03 |
| 38 | GO:0004521: endoribonuclease activity | 5.91E-03 |
| 39 | GO:0000049: tRNA binding | 5.91E-03 |
| 40 | GO:0003725: double-stranded RNA binding | 6.46E-03 |
| 41 | GO:0009982: pseudouridine synthase activity | 6.46E-03 |
| 42 | GO:0003729: mRNA binding | 7.64E-03 |
| 43 | GO:0019843: rRNA binding | 1.13E-02 |
| 44 | GO:0004527: exonuclease activity | 1.43E-02 |
| 45 | GO:0003713: transcription coactivator activity | 1.43E-02 |
| 46 | GO:0010181: FMN binding | 1.51E-02 |
| 47 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.51E-02 |
| 48 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.61E-02 |
| 49 | GO:0003697: single-stranded DNA binding | 3.08E-02 |
| 50 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.18E-02 |
| 51 | GO:0016787: hydrolase activity | 4.31E-02 |
| 52 | GO:0005515: protein binding | 4.33E-02 |
| 53 | GO:0003924: GTPase activity | 4.41E-02 |
| 54 | GO:0003690: double-stranded DNA binding | 4.68E-02 |
| 55 | GO:0004519: endonuclease activity | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0070545: PeBoW complex | 0.00E+00 |
| 5 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 6 | GO:0005730: nucleolus | 6.28E-46 |
| 7 | GO:0032040: small-subunit processome | 5.33E-14 |
| 8 | GO:0005634: nucleus | 2.04E-12 |
| 9 | GO:0005840: ribosome | 3.93E-11 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.99E-09 |
| 11 | GO:0022625: cytosolic large ribosomal subunit | 6.52E-09 |
| 12 | GO:0022627: cytosolic small ribosomal subunit | 4.74E-07 |
| 13 | GO:0030687: preribosome, large subunit precursor | 1.23E-06 |
| 14 | GO:0005736: DNA-directed RNA polymerase I complex | 3.91E-06 |
| 15 | GO:0005834: heterotrimeric G-protein complex | 9.86E-06 |
| 16 | GO:0022626: cytosolic ribosome | 3.23E-05 |
| 17 | GO:0031428: box C/D snoRNP complex | 5.33E-05 |
| 18 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.69E-04 |
| 19 | GO:0030688: preribosome, small subunit precursor | 1.69E-04 |
| 20 | GO:0030686: 90S preribosome | 1.69E-04 |
| 21 | GO:0005763: mitochondrial small ribosomal subunit | 1.95E-04 |
| 22 | GO:0005666: DNA-directed RNA polymerase III complex | 2.33E-04 |
| 23 | GO:0015030: Cajal body | 2.33E-04 |
| 24 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.75E-04 |
| 25 | GO:0009506: plasmodesma | 3.09E-04 |
| 26 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.66E-04 |
| 27 | GO:0000419: DNA-directed RNA polymerase V complex | 5.87E-04 |
| 28 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 6.25E-04 |
| 29 | GO:0030132: clathrin coat of coated pit | 6.25E-04 |
| 30 | GO:0015935: small ribosomal subunit | 7.83E-04 |
| 31 | GO:0031429: box H/ACA snoRNP complex | 8.93E-04 |
| 32 | GO:0005654: nucleoplasm | 1.67E-03 |
| 33 | GO:0016363: nuclear matrix | 2.22E-03 |
| 34 | GO:0034399: nuclear periphery | 3.02E-03 |
| 35 | GO:0005622: intracellular | 3.04E-03 |
| 36 | GO:0015934: large ribosomal subunit | 3.33E-03 |
| 37 | GO:0005829: cytosol | 4.86E-03 |
| 38 | GO:0031307: integral component of mitochondrial outer membrane | 5.91E-03 |
| 39 | GO:0019013: viral nucleocapsid | 6.46E-03 |
| 40 | GO:0005737: cytoplasm | 8.24E-03 |
| 41 | GO:0005758: mitochondrial intermembrane space | 8.81E-03 |
| 42 | GO:0005741: mitochondrial outer membrane | 1.01E-02 |
| 43 | GO:0009532: plastid stroma | 1.01E-02 |
| 44 | GO:0005759: mitochondrial matrix | 1.42E-02 |
| 45 | GO:0005618: cell wall | 1.49E-02 |
| 46 | GO:0016592: mediator complex | 1.74E-02 |
| 47 | GO:0010319: stromule | 1.99E-02 |
| 48 | GO:0030529: intracellular ribonucleoprotein complex | 2.16E-02 |
| 49 | GO:0019005: SCF ubiquitin ligase complex | 2.61E-02 |
| 50 | GO:0005743: mitochondrial inner membrane | 4.11E-02 |