Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042908: xenobiotic transport0.00E+00
2GO:0018293: protein-FAD linkage0.00E+00
3GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
4GO:0032780: negative regulation of ATPase activity0.00E+00
5GO:0051776: detection of redox state0.00E+00
6GO:0046292: formaldehyde metabolic process0.00E+00
7GO:0010336: gibberellic acid homeostasis0.00E+00
8GO:0045747: positive regulation of Notch signaling pathway0.00E+00
9GO:0046294: formaldehyde catabolic process0.00E+00
10GO:0016093: polyprenol metabolic process0.00E+00
11GO:0006793: phosphorus metabolic process0.00E+00
12GO:0006069: ethanol oxidation0.00E+00
13GO:0006721: terpenoid metabolic process0.00E+00
14GO:0055114: oxidation-reduction process4.93E-14
15GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.76E-08
16GO:0006555: methionine metabolic process1.45E-04
17GO:0009853: photorespiration1.64E-04
18GO:0006099: tricarboxylic acid cycle1.77E-04
19GO:0019509: L-methionine salvage from methylthioadenosine1.97E-04
20GO:0050790: regulation of catalytic activity2.57E-04
21GO:0015991: ATP hydrolysis coupled proton transport2.90E-04
22GO:0006835: dicarboxylic acid transport3.14E-04
23GO:0016487: farnesol metabolic process3.14E-04
24GO:0006481: C-terminal protein methylation3.14E-04
25GO:0031539: positive regulation of anthocyanin metabolic process3.14E-04
26GO:0006007: glucose catabolic process3.14E-04
27GO:0031468: nuclear envelope reassembly3.14E-04
28GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport3.14E-04
29GO:0005978: glycogen biosynthetic process3.24E-04
30GO:0015986: ATP synthesis coupled proton transport3.54E-04
31GO:0051603: proteolysis involved in cellular protein catabolic process4.33E-04
32GO:0046685: response to arsenic-containing substance4.78E-04
33GO:0051592: response to calcium ion6.87E-04
34GO:0080183: response to photooxidative stress6.87E-04
35GO:0043255: regulation of carbohydrate biosynthetic process6.87E-04
36GO:0019388: galactose catabolic process6.87E-04
37GO:0080026: response to indolebutyric acid6.87E-04
38GO:0019441: tryptophan catabolic process to kynurenine6.87E-04
39GO:0097054: L-glutamate biosynthetic process6.87E-04
40GO:0006006: glucose metabolic process9.84E-04
41GO:0045793: positive regulation of cell size1.11E-03
42GO:0006760: folic acid-containing compound metabolic process1.11E-03
43GO:0010351: lithium ion transport1.11E-03
44GO:1901562: response to paraquat1.11E-03
45GO:0015940: pantothenate biosynthetic process1.11E-03
46GO:0045454: cell redox homeostasis1.35E-03
47GO:0006487: protein N-linked glycosylation1.52E-03
48GO:0032877: positive regulation of DNA endoreduplication1.60E-03
49GO:0006107: oxaloacetate metabolic process1.60E-03
50GO:0006537: glutamate biosynthetic process1.60E-03
51GO:1901332: negative regulation of lateral root development1.60E-03
52GO:0032981: mitochondrial respiratory chain complex I assembly1.60E-03
53GO:0009963: positive regulation of flavonoid biosynthetic process1.60E-03
54GO:0006516: glycoprotein catabolic process1.60E-03
55GO:0015700: arsenite transport1.60E-03
56GO:0009590: detection of gravity1.60E-03
57GO:0080024: indolebutyric acid metabolic process1.60E-03
58GO:0006882: cellular zinc ion homeostasis1.60E-03
59GO:0015992: proton transport1.84E-03
60GO:0010017: red or far-red light signaling pathway2.02E-03
61GO:0006646: phosphatidylethanolamine biosynthetic process2.14E-03
62GO:0010109: regulation of photosynthesis2.14E-03
63GO:0019676: ammonia assimilation cycle2.14E-03
64GO:0015743: malate transport2.14E-03
65GO:0051781: positive regulation of cell division2.14E-03
66GO:0015846: polyamine transport2.14E-03
67GO:0006221: pyrimidine nucleotide biosynthetic process2.14E-03
68GO:0032366: intracellular sterol transport2.14E-03
69GO:0009229: thiamine diphosphate biosynthetic process2.74E-03
70GO:0018344: protein geranylgeranylation2.74E-03
71GO:0080022: primary root development2.80E-03
72GO:0042391: regulation of membrane potential2.80E-03
73GO:0006662: glycerol ether metabolic process3.01E-03
74GO:0006508: proteolysis3.11E-03
75GO:0006814: sodium ion transport3.24E-03
76GO:0006121: mitochondrial electron transport, succinate to ubiquinone3.38E-03
77GO:0006796: phosphate-containing compound metabolic process3.38E-03
78GO:0007035: vacuolar acidification3.38E-03
79GO:0009117: nucleotide metabolic process3.38E-03
80GO:0009228: thiamine biosynthetic process3.38E-03
81GO:0019252: starch biosynthetic process3.47E-03
82GO:1901001: negative regulation of response to salt stress4.06E-03
83GO:0010189: vitamin E biosynthetic process4.06E-03
84GO:0080167: response to karrikin4.37E-03
85GO:0080027: response to herbivore4.80E-03
86GO:0006955: immune response4.80E-03
87GO:0030026: cellular manganese ion homeostasis4.80E-03
88GO:0044550: secondary metabolite biosynthetic process4.96E-03
89GO:0009615: response to virus5.37E-03
90GO:0009555: pollen development5.37E-03
91GO:0048658: anther wall tapetum development5.57E-03
92GO:0010439: regulation of glucosinolate biosynthetic process5.57E-03
93GO:0030091: protein repair5.57E-03
94GO:0009787: regulation of abscisic acid-activated signaling pathway5.57E-03
95GO:0000028: ribosomal small subunit assembly5.57E-03
96GO:0009788: negative regulation of abscisic acid-activated signaling pathway5.68E-03
97GO:0010099: regulation of photomorphogenesis6.39E-03
98GO:0022900: electron transport chain6.39E-03
99GO:0015996: chlorophyll catabolic process6.39E-03
100GO:0009821: alkaloid biosynthetic process7.24E-03
101GO:0080144: amino acid homeostasis7.24E-03
102GO:0006754: ATP biosynthetic process7.24E-03
103GO:0009407: toxin catabolic process7.74E-03
104GO:0007568: aging8.12E-03
105GO:0051453: regulation of intracellular pH8.14E-03
106GO:0043069: negative regulation of programmed cell death9.07E-03
107GO:0055062: phosphate ion homeostasis9.07E-03
108GO:0006896: Golgi to vacuole transport9.07E-03
109GO:0000103: sulfate assimilation9.07E-03
110GO:0034599: cellular response to oxidative stress9.31E-03
111GO:0048229: gametophyte development1.00E-02
112GO:0006378: mRNA polyadenylation1.00E-02
113GO:0009651: response to salt stress1.00E-02
114GO:0002213: defense response to insect1.11E-02
115GO:0006829: zinc II ion transport1.21E-02
116GO:0006108: malate metabolic process1.21E-02
117GO:0006807: nitrogen compound metabolic process1.21E-02
118GO:0009691: cytokinin biosynthetic process1.21E-02
119GO:0007034: vacuolar transport1.32E-02
120GO:0005975: carbohydrate metabolic process1.34E-02
121GO:0009826: unidimensional cell growth1.34E-02
122GO:0046686: response to cadmium ion1.41E-02
123GO:0042343: indole glucosinolate metabolic process1.43E-02
124GO:0007030: Golgi organization1.43E-02
125GO:0006071: glycerol metabolic process1.54E-02
126GO:0042753: positive regulation of circadian rhythm1.54E-02
127GO:0006970: response to osmotic stress1.55E-02
128GO:2000377: regulation of reactive oxygen species metabolic process1.66E-02
129GO:0009723: response to ethylene1.70E-02
130GO:0051302: regulation of cell division1.78E-02
131GO:0019953: sexual reproduction1.78E-02
132GO:0006874: cellular calcium ion homeostasis1.78E-02
133GO:0006096: glycolytic process1.84E-02
134GO:0098542: defense response to other organism1.91E-02
135GO:0010431: seed maturation1.91E-02
136GO:0019915: lipid storage1.91E-02
137GO:0009620: response to fungus2.02E-02
138GO:0019748: secondary metabolic process2.03E-02
139GO:0016226: iron-sulfur cluster assembly2.03E-02
140GO:0035556: intracellular signal transduction2.03E-02
141GO:0006012: galactose metabolic process2.16E-02
142GO:0010118: stomatal movement2.57E-02
143GO:0034220: ion transmembrane transport2.57E-02
144GO:0009958: positive gravitropism2.71E-02
145GO:0006520: cellular amino acid metabolic process2.71E-02
146GO:0061025: membrane fusion2.85E-02
147GO:0009058: biosynthetic process2.93E-02
148GO:0008654: phospholipid biosynthetic process3.00E-02
149GO:0006623: protein targeting to vacuole3.00E-02
150GO:0006629: lipid metabolic process3.02E-02
151GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.15E-02
152GO:0008152: metabolic process3.41E-02
153GO:0009828: plant-type cell wall loosening3.61E-02
154GO:0006464: cellular protein modification process3.61E-02
155GO:0010286: heat acclimation3.77E-02
156GO:0010150: leaf senescence3.83E-02
157GO:0000910: cytokinesis3.92E-02
158GO:0009627: systemic acquired resistance4.42E-02
159GO:0042128: nitrate assimilation4.42E-02
160GO:0006950: response to stress4.59E-02
161GO:0008219: cell death4.93E-02
162GO:0009817: defense response to fungus, incompatible interaction4.93E-02
RankGO TermAdjusted P value
1GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
2GO:0042030: ATPase inhibitor activity0.00E+00
3GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
4GO:0050342: tocopherol O-methyltransferase activity0.00E+00
5GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
6GO:0015930: glutamate synthase activity0.00E+00
7GO:0050152: omega-amidase activity0.00E+00
8GO:0009940: amino-terminal vacuolar sorting propeptide binding0.00E+00
9GO:0018738: S-formylglutathione hydrolase activity0.00E+00
10GO:0050334: thiaminase activity0.00E+00
11GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
12GO:0017153: sodium:dicarboxylate symporter activity0.00E+00
13GO:0047886: farnesol dehydrogenase activity0.00E+00
14GO:0033961: cis-stilbene-oxide hydrolase activity0.00E+00
15GO:0008137: NADH dehydrogenase (ubiquinone) activity3.43E-08
16GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.59E-05
17GO:0016491: oxidoreductase activity1.82E-05
18GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.06E-05
19GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity3.55E-05
20GO:0008106: alcohol dehydrogenase (NADP+) activity3.55E-05
21GO:0004301: epoxide hydrolase activity6.35E-05
22GO:0050897: cobalt ion binding1.40E-04
23GO:0005261: cation channel activity1.97E-04
24GO:0016041: glutamate synthase (ferredoxin) activity3.14E-04
25GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity3.14E-04
26GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity3.14E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.14E-04
28GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity3.14E-04
29GO:0004560: alpha-L-fucosidase activity3.14E-04
30GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity3.14E-04
31GO:0016776: phosphotransferase activity, phosphate group as acceptor3.14E-04
32GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity3.14E-04
33GO:0016780: phosphotransferase activity, for other substituted phosphate groups3.14E-04
34GO:0008802: betaine-aldehyde dehydrogenase activity3.14E-04
35GO:0071992: phytochelatin transmembrane transporter activity3.14E-04
36GO:0015446: ATPase-coupled arsenite transmembrane transporter activity3.14E-04
37GO:0004307: ethanolaminephosphotransferase activity3.14E-04
38GO:0019707: protein-cysteine S-acyltransferase activity3.14E-04
39GO:0010209: vacuolar sorting signal binding3.14E-04
40GO:0030611: arsenate reductase activity3.14E-04
41GO:0015078: hydrogen ion transmembrane transporter activity3.98E-04
42GO:0004197: cysteine-type endopeptidase activity4.63E-04
43GO:0008234: cysteine-type peptidase activity4.81E-04
44GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.03E-04
45GO:0015179: L-amino acid transmembrane transporter activity6.87E-04
46GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity6.87E-04
47GO:0004061: arylformamidase activity6.87E-04
48GO:0019172: glyoxalase III activity6.87E-04
49GO:0004614: phosphoglucomutase activity6.87E-04
50GO:0030572: phosphatidyltransferase activity6.87E-04
51GO:0004142: diacylglycerol cholinephosphotransferase activity6.87E-04
52GO:0046961: proton-transporting ATPase activity, rotational mechanism7.62E-04
53GO:0008794: arsenate reductase (glutaredoxin) activity7.62E-04
54GO:0004022: alcohol dehydrogenase (NAD) activity9.84E-04
55GO:0016805: dipeptidase activity1.11E-03
56GO:0052692: raffinose alpha-galactosidase activity1.11E-03
57GO:0004557: alpha-galactosidase activity1.11E-03
58GO:0004663: Rab geranylgeranyltransferase activity1.11E-03
59GO:0030552: cAMP binding1.24E-03
60GO:0030553: cGMP binding1.24E-03
61GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.60E-03
62GO:0035529: NADH pyrophosphatase activity1.60E-03
63GO:0015203: polyamine transmembrane transporter activity1.60E-03
64GO:0005216: ion channel activity1.68E-03
65GO:0005506: iron ion binding1.79E-03
66GO:0015368: calcium:cation antiporter activity2.14E-03
67GO:0010011: auxin binding2.14E-03
68GO:0015369: calcium:proton antiporter activity2.14E-03
69GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.14E-03
70GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.14E-03
71GO:0008878: glucose-1-phosphate adenylyltransferase activity2.14E-03
72GO:0004576: oligosaccharyl transferase activity2.14E-03
73GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.14E-03
74GO:0047134: protein-disulfide reductase activity2.59E-03
75GO:0008177: succinate dehydrogenase (ubiquinone) activity2.74E-03
76GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.74E-03
77GO:0051538: 3 iron, 4 sulfur cluster binding2.74E-03
78GO:0005249: voltage-gated potassium channel activity2.80E-03
79GO:0030551: cyclic nucleotide binding2.80E-03
80GO:0004791: thioredoxin-disulfide reductase activity3.24E-03
81GO:0016853: isomerase activity3.24E-03
82GO:0016788: hydrolase activity, acting on ester bonds3.24E-03
83GO:0004029: aldehyde dehydrogenase (NAD) activity3.38E-03
84GO:0051117: ATPase binding3.38E-03
85GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity3.38E-03
86GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity3.38E-03
87GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity3.38E-03
88GO:0016787: hydrolase activity3.51E-03
89GO:0051920: peroxiredoxin activity4.06E-03
90GO:0070300: phosphatidic acid binding4.06E-03
91GO:0015035: protein disulfide oxidoreductase activity4.18E-03
92GO:0008235: metalloexopeptidase activity4.80E-03
93GO:0004427: inorganic diphosphatase activity4.80E-03
94GO:0008121: ubiquinol-cytochrome-c reductase activity4.80E-03
95GO:0015140: malate transmembrane transporter activity4.80E-03
96GO:0016209: antioxidant activity5.57E-03
97GO:0004034: aldose 1-epimerase activity5.57E-03
98GO:0004869: cysteine-type endopeptidase inhibitor activity5.57E-03
99GO:0015491: cation:cation antiporter activity5.57E-03
100GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen6.46E-03
101GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.24E-03
102GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.24E-03
103GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.24E-03
104GO:0008889: glycerophosphodiester phosphodiesterase activity7.24E-03
105GO:0030145: manganese ion binding8.12E-03
106GO:0016844: strictosidine synthase activity8.14E-03
107GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.14E-03
108GO:0015174: basic amino acid transmembrane transporter activity8.14E-03
109GO:0005507: copper ion binding9.94E-03
110GO:0004177: aminopeptidase activity1.00E-02
111GO:0008559: xenobiotic-transporting ATPase activity1.00E-02
112GO:0004129: cytochrome-c oxidase activity1.00E-02
113GO:0051539: 4 iron, 4 sulfur cluster binding1.02E-02
114GO:0004364: glutathione transferase activity1.10E-02
115GO:0004185: serine-type carboxypeptidase activity1.15E-02
116GO:0004089: carbonate dehydratase activity1.21E-02
117GO:0008061: chitin binding1.43E-02
118GO:0020037: heme binding1.44E-02
119GO:0004725: protein tyrosine phosphatase activity1.54E-02
120GO:0051536: iron-sulfur cluster binding1.66E-02
121GO:0043130: ubiquitin binding1.66E-02
122GO:0008324: cation transmembrane transporter activity1.78E-02
123GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.90E-02
124GO:0004540: ribonuclease activity1.91E-02
125GO:0022857: transmembrane transporter activity2.09E-02
126GO:0052689: carboxylic ester hydrolase activity2.10E-02
127GO:0022891: substrate-specific transmembrane transporter activity2.16E-02
128GO:0016746: transferase activity, transferring acyl groups2.28E-02
129GO:0046873: metal ion transmembrane transporter activity2.71E-02
130GO:0050662: coenzyme binding2.85E-02
131GO:0004872: receptor activity3.00E-02
132GO:0019825: oxygen binding3.16E-02
133GO:0005516: calmodulin binding3.43E-02
134GO:0015250: water channel activity4.09E-02
135GO:0009931: calcium-dependent protein serine/threonine kinase activity4.42E-02
136GO:0004683: calmodulin-dependent protein kinase activity4.59E-02
137GO:0008236: serine-type peptidase activity4.76E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0000274: mitochondrial proton-transporting ATP synthase, stator stalk0.00E+00
3GO:0097708: intracellular vesicle0.00E+00
4GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain0.00E+00
5GO:0005747: mitochondrial respiratory chain complex I4.59E-16
6GO:0005773: vacuole4.29E-12
7GO:0005753: mitochondrial proton-transporting ATP synthase complex2.81E-06
8GO:0005774: vacuolar membrane2.91E-06
9GO:0045271: respiratory chain complex I5.74E-06
10GO:0045273: respiratory chain complex II8.86E-06
11GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)8.86E-06
12GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)6.35E-05
13GO:0005764: lysosome7.33E-05
14GO:0005829: cytosol1.52E-04
15GO:0005739: mitochondrion3.65E-04
16GO:0031966: mitochondrial membrane3.66E-04
17GO:0005783: endoplasmic reticulum8.19E-04
18GO:0005750: mitochondrial respiratory chain complex III1.11E-03
19GO:0000325: plant-type vacuole1.14E-03
20GO:0016020: membrane1.42E-03
21GO:0005758: mitochondrial intermembrane space1.52E-03
22GO:0000276: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)1.60E-03
23GO:0005968: Rab-protein geranylgeranyltransferase complex1.60E-03
24GO:0005849: mRNA cleavage factor complex1.60E-03
25GO:0009507: chloroplast1.60E-03
26GO:0005777: peroxisome1.94E-03
27GO:0016471: vacuolar proton-transporting V-type ATPase complex2.14E-03
28GO:0033179: proton-transporting V-type ATPase, V0 domain2.14E-03
29GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain2.74E-03
30GO:0005746: mitochondrial respiratory chain2.74E-03
31GO:0008250: oligosaccharyltransferase complex2.74E-03
32GO:0009536: plastid2.91E-03
33GO:0005887: integral component of plasma membrane3.36E-03
34GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.38E-03
35GO:0031463: Cul3-RING ubiquitin ligase complex3.38E-03
36GO:0009840: chloroplastic endopeptidase Clp complex4.06E-03
37GO:0010319: stromule4.79E-03
38GO:0009501: amyloplast5.57E-03
39GO:0005759: mitochondrial matrix7.18E-03
40GO:0005763: mitochondrial small ribosomal subunit7.24E-03
41GO:0030665: clathrin-coated vesicle membrane8.14E-03
42GO:0017119: Golgi transport complex9.07E-03
43GO:0009570: chloroplast stroma9.11E-03
44GO:0005615: extracellular space9.33E-03
45GO:0005765: lysosomal membrane1.00E-02
46GO:0070469: respiratory chain1.78E-02
47GO:0005886: plasma membrane1.86E-02
48GO:0009532: plastid stroma1.91E-02
49GO:0005770: late endosome2.71E-02
50GO:0005623: cell2.85E-02
51GO:0016021: integral component of membrane3.39E-02
52GO:0005789: endoplasmic reticulum membrane3.71E-02
53GO:0005788: endoplasmic reticulum lumen4.25E-02
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Gene type



Gene DE type