GO Enrichment Analysis of Co-expressed Genes with
AT3G22300
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:1902184: negative regulation of shoot apical meristem development | 0.00E+00 |
| 4 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 5 | GO:0071433: cell wall repair | 0.00E+00 |
| 6 | GO:0006364: rRNA processing | 3.02E-14 |
| 7 | GO:0042254: ribosome biogenesis | 2.17E-08 |
| 8 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.44E-07 |
| 9 | GO:0009553: embryo sac development | 8.70E-07 |
| 10 | GO:0010162: seed dormancy process | 1.17E-06 |
| 11 | GO:0042273: ribosomal large subunit biogenesis | 6.01E-06 |
| 12 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.20E-05 |
| 13 | GO:0043985: histone H4-R3 methylation | 7.90E-05 |
| 14 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 7.90E-05 |
| 15 | GO:0034470: ncRNA processing | 1.89E-04 |
| 16 | GO:0080009: mRNA methylation | 1.89E-04 |
| 17 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.34E-04 |
| 18 | GO:0006412: translation | 2.52E-04 |
| 19 | GO:0045604: regulation of epidermal cell differentiation | 3.17E-04 |
| 20 | GO:0009294: DNA mediated transformation | 3.42E-04 |
| 21 | GO:0009561: megagametogenesis | 3.73E-04 |
| 22 | GO:0007276: gamete generation | 4.58E-04 |
| 23 | GO:0009855: determination of bilateral symmetry | 4.58E-04 |
| 24 | GO:1900864: mitochondrial RNA modification | 6.09E-04 |
| 25 | GO:0046345: abscisic acid catabolic process | 6.09E-04 |
| 26 | GO:0042274: ribosomal small subunit biogenesis | 6.09E-04 |
| 27 | GO:0000460: maturation of 5.8S rRNA | 6.09E-04 |
| 28 | GO:0006479: protein methylation | 6.09E-04 |
| 29 | GO:0000380: alternative mRNA splicing, via spliceosome | 7.72E-04 |
| 30 | GO:0010375: stomatal complex patterning | 7.72E-04 |
| 31 | GO:0000470: maturation of LSU-rRNA | 9.42E-04 |
| 32 | GO:0010077: maintenance of inflorescence meristem identity | 1.12E-03 |
| 33 | GO:0048444: floral organ morphogenesis | 1.12E-03 |
| 34 | GO:0010374: stomatal complex development | 1.31E-03 |
| 35 | GO:0045995: regulation of embryonic development | 1.31E-03 |
| 36 | GO:0080186: developmental vegetative growth | 1.31E-03 |
| 37 | GO:0042255: ribosome assembly | 1.51E-03 |
| 38 | GO:0000028: ribosomal small subunit assembly | 1.51E-03 |
| 39 | GO:2000024: regulation of leaf development | 1.95E-03 |
| 40 | GO:0000387: spliceosomal snRNP assembly | 2.18E-03 |
| 41 | GO:1900865: chloroplast RNA modification | 2.18E-03 |
| 42 | GO:0030422: production of siRNA involved in RNA interference | 2.41E-03 |
| 43 | GO:0010582: floral meristem determinacy | 2.92E-03 |
| 44 | GO:0016569: covalent chromatin modification | 3.03E-03 |
| 45 | GO:0010030: positive regulation of seed germination | 3.73E-03 |
| 46 | GO:0051302: regulation of cell division | 4.61E-03 |
| 47 | GO:0007005: mitochondrion organization | 5.24E-03 |
| 48 | GO:0070417: cellular response to cold | 6.22E-03 |
| 49 | GO:0010501: RNA secondary structure unwinding | 6.57E-03 |
| 50 | GO:0009960: endosperm development | 6.92E-03 |
| 51 | GO:0010197: polar nucleus fusion | 6.92E-03 |
| 52 | GO:0048825: cotyledon development | 7.64E-03 |
| 53 | GO:0016049: cell growth | 1.21E-02 |
| 54 | GO:0045892: negative regulation of transcription, DNA-templated | 1.29E-02 |
| 55 | GO:0048527: lateral root development | 1.38E-02 |
| 56 | GO:0032259: methylation | 1.50E-02 |
| 57 | GO:0000154: rRNA modification | 1.92E-02 |
| 58 | GO:0006417: regulation of translation | 2.35E-02 |
| 59 | GO:0006396: RNA processing | 2.87E-02 |
| 60 | GO:0009790: embryo development | 3.68E-02 |
| 61 | GO:0009793: embryo development ending in seed dormancy | 3.78E-02 |
| 62 | GO:0009451: RNA modification | 4.21E-02 |
| 63 | GO:0007166: cell surface receptor signaling pathway | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 2 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 3 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 4 | GO:0000166: nucleotide binding | 5.87E-15 |
| 5 | GO:0030515: snoRNA binding | 1.91E-07 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 3.44E-07 |
| 7 | GO:0003723: RNA binding | 1.00E-06 |
| 8 | GO:0004407: histone deacetylase activity | 5.65E-06 |
| 9 | GO:0003735: structural constituent of ribosome | 1.33E-05 |
| 10 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 7.90E-05 |
| 11 | GO:0042134: rRNA primary transcript binding | 7.90E-05 |
| 12 | GO:0001054: RNA polymerase I activity | 1.08E-04 |
| 13 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.23E-04 |
| 14 | GO:0070181: small ribosomal subunit rRNA binding | 3.17E-04 |
| 15 | GO:0008168: methyltransferase activity | 1.16E-03 |
| 16 | GO:0001055: RNA polymerase II activity | 2.18E-03 |
| 17 | GO:0001056: RNA polymerase III activity | 2.92E-03 |
| 18 | GO:0008026: ATP-dependent helicase activity | 3.41E-03 |
| 19 | GO:0019843: rRNA binding | 4.02E-03 |
| 20 | GO:0004527: exonuclease activity | 6.92E-03 |
| 21 | GO:0016787: hydrolase activity | 9.17E-03 |
| 22 | GO:0004004: ATP-dependent RNA helicase activity | 1.16E-02 |
| 23 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.21E-02 |
| 24 | GO:0003746: translation elongation factor activity | 1.48E-02 |
| 25 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.52E-02 |
| 26 | GO:0005515: protein binding | 1.96E-02 |
| 27 | GO:0003729: mRNA binding | 2.18E-02 |
| 28 | GO:0003676: nucleic acid binding | 2.44E-02 |
| 29 | GO:0051082: unfolded protein binding | 2.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 9.41E-38 |
| 5 | GO:0032040: small-subunit processome | 3.36E-13 |
| 6 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.55E-11 |
| 7 | GO:0005634: nucleus | 2.96E-09 |
| 8 | GO:0005834: heterotrimeric G-protein complex | 1.70E-08 |
| 9 | GO:0030687: preribosome, large subunit precursor | 1.91E-07 |
| 10 | GO:0070545: PeBoW complex | 3.44E-07 |
| 11 | GO:0005736: DNA-directed RNA polymerase I complex | 6.25E-05 |
| 12 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 7.90E-05 |
| 13 | GO:0005759: mitochondrial matrix | 6.34E-04 |
| 14 | GO:0005840: ribosome | 6.66E-04 |
| 15 | GO:0031428: box C/D snoRNP complex | 9.42E-04 |
| 16 | GO:0022627: cytosolic small ribosomal subunit | 1.01E-03 |
| 17 | GO:0016363: nuclear matrix | 1.12E-03 |
| 18 | GO:0034399: nuclear periphery | 1.51E-03 |
| 19 | GO:0005763: mitochondrial small ribosomal subunit | 1.95E-03 |
| 20 | GO:0015030: Cajal body | 2.18E-03 |
| 21 | GO:0005666: DNA-directed RNA polymerase III complex | 2.18E-03 |
| 22 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.41E-03 |
| 23 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.92E-03 |
| 24 | GO:0019013: viral nucleocapsid | 3.18E-03 |
| 25 | GO:0005654: nucleoplasm | 3.91E-03 |
| 26 | GO:0000419: DNA-directed RNA polymerase V complex | 4.02E-03 |
| 27 | GO:0005618: cell wall | 6.78E-03 |
| 28 | GO:0030529: intracellular ribonucleoprotein complex | 1.04E-02 |
| 29 | GO:0022625: cytosolic large ribosomal subunit | 1.12E-02 |
| 30 | GO:0015934: large ribosomal subunit | 1.38E-02 |
| 31 | GO:0005747: mitochondrial respiratory chain complex I | 2.52E-02 |
| 32 | GO:0016607: nuclear speck | 2.52E-02 |
| 33 | GO:0022626: cytosolic ribosome | 2.67E-02 |
| 34 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.99E-02 |