Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G21890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
2GO:0010243: response to organonitrogen compound0.00E+00
3GO:0071483: cellular response to blue light3.09E-09
4GO:0010100: negative regulation of photomorphogenesis9.65E-08
5GO:0042754: negative regulation of circadian rhythm1.11E-07
6GO:0007623: circadian rhythm4.31E-07
7GO:0048574: long-day photoperiodism, flowering1.85E-05
8GO:0006355: regulation of transcription, DNA-templated4.79E-05
9GO:0009909: regulation of flower development7.83E-05
10GO:0043496: regulation of protein homodimerization activity1.04E-04
11GO:0043100: pyrimidine nucleobase salvage1.04E-04
12GO:1902066: regulation of cell wall pectin metabolic process1.04E-04
13GO:0051511: negative regulation of unidimensional cell growth1.04E-04
14GO:0006898: receptor-mediated endocytosis1.04E-04
15GO:0009753: response to jasmonic acid1.16E-04
16GO:0006351: transcription, DNA-templated1.27E-04
17GO:0071230: cellular response to amino acid stimulus1.78E-04
18GO:0016570: histone modification1.78E-04
19GO:0019419: sulfate reduction1.78E-04
20GO:2001141: regulation of RNA biosynthetic process2.63E-04
21GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.63E-04
22GO:0009739: response to gibberellin2.83E-04
23GO:0009902: chloroplast relocation3.53E-04
24GO:0010600: regulation of auxin biosynthetic process3.53E-04
25GO:0009658: chloroplast organization4.31E-04
26GO:0009904: chloroplast accumulation movement4.50E-04
27GO:0010236: plastoquinone biosynthetic process4.50E-04
28GO:0009723: response to ethylene5.19E-04
29GO:0048317: seed morphogenesis5.51E-04
30GO:0009903: chloroplast avoidance movement6.58E-04
31GO:0080060: integument development6.58E-04
32GO:0009640: photomorphogenesis7.66E-04
33GO:0070370: cellular heat acclimation7.69E-04
34GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.69E-04
35GO:0045995: regulation of embryonic development7.69E-04
36GO:0006368: transcription elongation from RNA polymerase II promoter7.69E-04
37GO:0031540: regulation of anthocyanin biosynthetic process8.84E-04
38GO:0009751: response to salicylic acid9.00E-04
39GO:0009821: alkaloid biosynthetic process1.13E-03
40GO:0000103: sulfate assimilation1.39E-03
41GO:0051555: flavonol biosynthetic process1.39E-03
42GO:0009624: response to nematode1.42E-03
43GO:0006352: DNA-templated transcription, initiation1.53E-03
44GO:0000272: polysaccharide catabolic process1.53E-03
45GO:0006816: calcium ion transport1.53E-03
46GO:0009785: blue light signaling pathway1.82E-03
47GO:0009416: response to light stimulus1.86E-03
48GO:0010207: photosystem II assembly1.97E-03
49GO:0007015: actin filament organization1.97E-03
50GO:0045893: positive regulation of transcription, DNA-templated2.22E-03
51GO:0051017: actin filament bundle assembly2.46E-03
52GO:0019344: cysteine biosynthetic process2.46E-03
53GO:0008299: isoprenoid biosynthetic process2.62E-03
54GO:0006874: cellular calcium ion homeostasis2.62E-03
55GO:0010017: red or far-red light signaling pathway2.97E-03
56GO:0040007: growth3.15E-03
57GO:0042631: cellular response to water deprivation3.71E-03
58GO:0010182: sugar mediated signaling pathway3.91E-03
59GO:0042752: regulation of circadian rhythm4.11E-03
60GO:0009851: auxin biosynthetic process4.31E-03
61GO:0080167: response to karrikin4.61E-03
62GO:0009630: gravitropism4.72E-03
63GO:0009651: response to salt stress5.02E-03
64GO:0009567: double fertilization forming a zygote and endosperm5.15E-03
65GO:0009733: response to auxin5.26E-03
66GO:0045454: cell redox homeostasis5.51E-03
67GO:0045892: negative regulation of transcription, DNA-templated5.60E-03
68GO:0016126: sterol biosynthetic process5.81E-03
69GO:0042128: nitrate assimilation6.27E-03
70GO:0018298: protein-chromophore linkage6.98E-03
71GO:0009813: flavonoid biosynthetic process7.22E-03
72GO:0010218: response to far red light7.47E-03
73GO:0006811: ion transport7.47E-03
74GO:0008152: metabolic process7.48E-03
75GO:0046686: response to cadmium ion7.97E-03
76GO:0006865: amino acid transport7.97E-03
77GO:0045087: innate immune response8.23E-03
78GO:0009637: response to blue light8.23E-03
79GO:0010114: response to red light9.82E-03
80GO:0009737: response to abscisic acid1.19E-02
81GO:0009585: red, far-red light phototransduction1.21E-02
82GO:0035556: intracellular signal transduction1.27E-02
83GO:0006857: oligopeptide transport1.27E-02
84GO:0009058: biosynthetic process1.89E-02
85GO:0055114: oxidation-reduction process1.91E-02
86GO:0045490: pectin catabolic process2.29E-02
87GO:0010228: vegetative to reproductive phase transition of meristem2.37E-02
88GO:0010468: regulation of gene expression2.60E-02
89GO:0009409: response to cold3.32E-02
90GO:0010200: response to chitin3.74E-02
91GO:0015979: photosynthesis4.01E-02
92GO:0006281: DNA repair4.81E-02
RankGO TermAdjusted P value
1GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
2GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
3GO:0015205: nucleobase transmembrane transporter activity0.00E+00
4GO:0000989: transcription factor activity, transcription factor binding1.38E-07
5GO:0008106: alcohol dehydrogenase (NADP+) activity1.04E-06
6GO:0003700: transcription factor activity, sequence-specific DNA binding5.28E-06
7GO:0019904: protein domain specific binding4.16E-05
8GO:0008066: glutamate receptor activity4.18E-05
9GO:0009973: adenylyl-sulfate reductase activity1.04E-04
10GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding1.04E-04
11GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.04E-04
12GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.04E-04
13GO:0015173: aromatic amino acid transmembrane transporter activity1.04E-04
14GO:0050347: trans-octaprenyltranstransferase activity1.04E-04
15GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity1.04E-04
16GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding1.78E-04
17GO:0003913: DNA photolyase activity1.78E-04
18GO:0015175: neutral amino acid transmembrane transporter activity2.63E-04
19GO:0001053: plastid sigma factor activity3.53E-04
20GO:0016987: sigma factor activity3.53E-04
21GO:0004506: squalene monooxygenase activity3.53E-04
22GO:0045431: flavonol synthase activity4.50E-04
23GO:0004709: MAP kinase kinase kinase activity5.51E-04
24GO:0003677: DNA binding6.36E-04
25GO:0016161: beta-amylase activity6.58E-04
26GO:0009881: photoreceptor activity7.69E-04
27GO:0016844: strictosidine synthase activity1.25E-03
28GO:0008270: zinc ion binding1.43E-03
29GO:0005262: calcium channel activity1.82E-03
30GO:0004970: ionotropic glutamate receptor activity2.13E-03
31GO:0005217: intracellular ligand-gated ion channel activity2.13E-03
32GO:0042802: identical protein binding3.07E-03
33GO:0030570: pectate lyase activity3.15E-03
34GO:0004527: exonuclease activity3.91E-03
35GO:0010181: FMN binding4.11E-03
36GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.93E-03
37GO:0004871: signal transducer activity5.77E-03
38GO:0016491: oxidoreductase activity6.44E-03
39GO:0005515: protein binding8.19E-03
40GO:0004712: protein serine/threonine/tyrosine kinase activity8.75E-03
41GO:0015293: symporter activity1.07E-02
42GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.21E-02
43GO:0015171: amino acid transmembrane transporter activity1.30E-02
44GO:0015035: protein disulfide oxidoreductase activity1.59E-02
45GO:0044212: transcription regulatory region DNA binding2.45E-02
46GO:0003682: chromatin binding3.26E-02
47GO:0050660: flavin adenine dinucleotide binding3.47E-02
48GO:0004672: protein kinase activity3.60E-02
RankGO TermAdjusted P value
1GO:0031313: extrinsic component of endosome membrane0.00E+00
2GO:0031234: extrinsic component of cytoplasmic side of plasma membrane4.18E-05
3GO:0009526: plastid envelope3.53E-04
4GO:0016593: Cdc73/Paf1 complex3.53E-04
5GO:0031982: vesicle8.84E-04
6GO:0005884: actin filament1.53E-03
7GO:0005834: heterotrimeric G-protein complex1.43E-02
8GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.34E-02
9GO:0031969: chloroplast membrane3.65E-02
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Gene type



Gene DE type