GO Enrichment Analysis of Co-expressed Genes with
AT3G21580
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 4 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 3.33E-17 |
| 6 | GO:0018298: protein-chromophore linkage | 2.00E-07 |
| 7 | GO:0010206: photosystem II repair | 1.76E-06 |
| 8 | GO:0010027: thylakoid membrane organization | 4.31E-06 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 6.15E-06 |
| 10 | GO:0010207: photosystem II assembly | 8.47E-06 |
| 11 | GO:0009765: photosynthesis, light harvesting | 1.25E-05 |
| 12 | GO:0006109: regulation of carbohydrate metabolic process | 1.25E-05 |
| 13 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.77E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.22E-04 |
| 15 | GO:0000481: maturation of 5S rRNA | 1.22E-04 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 1.22E-04 |
| 17 | GO:0065002: intracellular protein transmembrane transport | 1.22E-04 |
| 18 | GO:0043686: co-translational protein modification | 1.22E-04 |
| 19 | GO:0043007: maintenance of rDNA | 1.22E-04 |
| 20 | GO:1902458: positive regulation of stomatal opening | 1.22E-04 |
| 21 | GO:0034337: RNA folding | 1.22E-04 |
| 22 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.22E-04 |
| 23 | GO:0043953: protein transport by the Tat complex | 1.22E-04 |
| 24 | GO:0016311: dephosphorylation | 1.54E-04 |
| 25 | GO:0043085: positive regulation of catalytic activity | 2.00E-04 |
| 26 | GO:0006432: phenylalanyl-tRNA aminoacylation | 2.82E-04 |
| 27 | GO:0018026: peptidyl-lysine monomethylation | 2.82E-04 |
| 28 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.82E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.82E-04 |
| 30 | GO:0010020: chloroplast fission | 3.00E-04 |
| 31 | GO:0006412: translation | 3.38E-04 |
| 32 | GO:0005977: glycogen metabolic process | 4.65E-04 |
| 33 | GO:0061077: chaperone-mediated protein folding | 5.06E-04 |
| 34 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.66E-04 |
| 35 | GO:0071484: cellular response to light intensity | 6.66E-04 |
| 36 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 6.66E-04 |
| 37 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.66E-04 |
| 38 | GO:0045454: cell redox homeostasis | 7.40E-04 |
| 39 | GO:0006662: glycerol ether metabolic process | 8.17E-04 |
| 40 | GO:0010021: amylopectin biosynthetic process | 8.84E-04 |
| 41 | GO:0015994: chlorophyll metabolic process | 8.84E-04 |
| 42 | GO:0022622: root system development | 8.84E-04 |
| 43 | GO:0006552: leucine catabolic process | 8.84E-04 |
| 44 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.12E-03 |
| 45 | GO:0031365: N-terminal protein amino acid modification | 1.12E-03 |
| 46 | GO:0000304: response to singlet oxygen | 1.12E-03 |
| 47 | GO:0042549: photosystem II stabilization | 1.37E-03 |
| 48 | GO:0042793: transcription from plastid promoter | 1.37E-03 |
| 49 | GO:0009645: response to low light intensity stimulus | 1.92E-03 |
| 50 | GO:0022904: respiratory electron transport chain | 1.92E-03 |
| 51 | GO:0032880: regulation of protein localization | 1.92E-03 |
| 52 | GO:0009772: photosynthetic electron transport in photosystem II | 1.92E-03 |
| 53 | GO:0010196: nonphotochemical quenching | 1.92E-03 |
| 54 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.92E-03 |
| 55 | GO:0010218: response to far red light | 2.03E-03 |
| 56 | GO:0032508: DNA duplex unwinding | 2.22E-03 |
| 57 | GO:2000070: regulation of response to water deprivation | 2.22E-03 |
| 58 | GO:0009231: riboflavin biosynthetic process | 2.22E-03 |
| 59 | GO:0016559: peroxisome fission | 2.22E-03 |
| 60 | GO:0048564: photosystem I assembly | 2.22E-03 |
| 61 | GO:0009642: response to light intensity | 2.22E-03 |
| 62 | GO:0030091: protein repair | 2.22E-03 |
| 63 | GO:0009637: response to blue light | 2.33E-03 |
| 64 | GO:0034599: cellular response to oxidative stress | 2.43E-03 |
| 65 | GO:0009658: chloroplast organization | 2.53E-03 |
| 66 | GO:0032544: plastid translation | 2.54E-03 |
| 67 | GO:0017004: cytochrome complex assembly | 2.54E-03 |
| 68 | GO:0015996: chlorophyll catabolic process | 2.54E-03 |
| 69 | GO:0007186: G-protein coupled receptor signaling pathway | 2.54E-03 |
| 70 | GO:0006754: ATP biosynthetic process | 2.87E-03 |
| 71 | GO:0006098: pentose-phosphate shunt | 2.87E-03 |
| 72 | GO:0009409: response to cold | 2.89E-03 |
| 73 | GO:0010114: response to red light | 2.99E-03 |
| 74 | GO:0010205: photoinhibition | 3.21E-03 |
| 75 | GO:0006913: nucleocytoplasmic transport | 3.94E-03 |
| 76 | GO:0009773: photosynthetic electron transport in photosystem I | 3.94E-03 |
| 77 | GO:0019684: photosynthesis, light reaction | 3.94E-03 |
| 78 | GO:0009073: aromatic amino acid family biosynthetic process | 3.94E-03 |
| 79 | GO:0005983: starch catabolic process | 4.32E-03 |
| 80 | GO:0045037: protein import into chloroplast stroma | 4.32E-03 |
| 81 | GO:0006006: glucose metabolic process | 4.71E-03 |
| 82 | GO:0006094: gluconeogenesis | 4.71E-03 |
| 83 | GO:0009767: photosynthetic electron transport chain | 4.71E-03 |
| 84 | GO:2000012: regulation of auxin polar transport | 4.71E-03 |
| 85 | GO:0006096: glycolytic process | 4.74E-03 |
| 86 | GO:0043086: negative regulation of catalytic activity | 4.74E-03 |
| 87 | GO:0006302: double-strand break repair | 5.12E-03 |
| 88 | GO:0019253: reductive pentose-phosphate cycle | 5.12E-03 |
| 89 | GO:0010030: positive regulation of seed germination | 5.54E-03 |
| 90 | GO:0048511: rhythmic process | 7.34E-03 |
| 91 | GO:0009269: response to desiccation | 7.34E-03 |
| 92 | GO:0031408: oxylipin biosynthetic process | 7.34E-03 |
| 93 | GO:0051321: meiotic cell cycle | 7.34E-03 |
| 94 | GO:0071369: cellular response to ethylene stimulus | 8.30E-03 |
| 95 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 9.31E-03 |
| 96 | GO:0008284: positive regulation of cell proliferation | 9.31E-03 |
| 97 | GO:0042631: cellular response to water deprivation | 9.83E-03 |
| 98 | GO:0009735: response to cytokinin | 1.01E-02 |
| 99 | GO:0010182: sugar mediated signaling pathway | 1.04E-02 |
| 100 | GO:0048868: pollen tube development | 1.04E-02 |
| 101 | GO:0009958: positive gravitropism | 1.04E-02 |
| 102 | GO:0015986: ATP synthesis coupled proton transport | 1.09E-02 |
| 103 | GO:0042752: regulation of circadian rhythm | 1.09E-02 |
| 104 | GO:0009646: response to absence of light | 1.09E-02 |
| 105 | GO:0009416: response to light stimulus | 1.13E-02 |
| 106 | GO:0019252: starch biosynthetic process | 1.15E-02 |
| 107 | GO:0071554: cell wall organization or biogenesis | 1.20E-02 |
| 108 | GO:0002229: defense response to oomycetes | 1.20E-02 |
| 109 | GO:0006810: transport | 1.25E-02 |
| 110 | GO:0009567: double fertilization forming a zygote and endosperm | 1.38E-02 |
| 111 | GO:0009817: defense response to fungus, incompatible interaction | 1.88E-02 |
| 112 | GO:0009813: flavonoid biosynthetic process | 1.95E-02 |
| 113 | GO:0048527: lateral root development | 2.09E-02 |
| 114 | GO:0009737: response to abscisic acid | 2.19E-02 |
| 115 | GO:0009867: jasmonic acid mediated signaling pathway | 2.23E-02 |
| 116 | GO:0006631: fatty acid metabolic process | 2.52E-02 |
| 117 | GO:0009744: response to sucrose | 2.67E-02 |
| 118 | GO:0032259: methylation | 2.69E-02 |
| 119 | GO:0042742: defense response to bacterium | 2.75E-02 |
| 120 | GO:0006979: response to oxidative stress | 2.77E-02 |
| 121 | GO:0006281: DNA repair | 2.81E-02 |
| 122 | GO:0009644: response to high light intensity | 2.82E-02 |
| 123 | GO:0055114: oxidation-reduction process | 3.01E-02 |
| 124 | GO:0009553: embryo sac development | 4.15E-02 |
| 125 | GO:0009555: pollen development | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0048039: ubiquinone binding | 0.00E+00 |
| 2 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
| 3 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 4 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 5 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 7 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 3.21E-07 |
| 9 | GO:0016168: chlorophyll binding | 4.87E-06 |
| 10 | GO:0031409: pigment binding | 1.25E-05 |
| 11 | GO:0005528: FK506 binding | 1.50E-05 |
| 12 | GO:0003959: NADPH dehydrogenase activity | 2.06E-05 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.91E-05 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 1.22E-04 |
| 15 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 1.22E-04 |
| 16 | GO:0050308: sugar-phosphatase activity | 1.22E-04 |
| 17 | GO:0042586: peptide deformylase activity | 1.22E-04 |
| 18 | GO:0008047: enzyme activator activity | 1.71E-04 |
| 19 | GO:0019156: isoamylase activity | 2.82E-04 |
| 20 | GO:0047746: chlorophyllase activity | 2.82E-04 |
| 21 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.82E-04 |
| 22 | GO:0004826: phenylalanine-tRNA ligase activity | 2.82E-04 |
| 23 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.82E-04 |
| 24 | GO:0016630: protochlorophyllide reductase activity | 2.82E-04 |
| 25 | GO:0008266: poly(U) RNA binding | 3.00E-04 |
| 26 | GO:0003735: structural constituent of ribosome | 4.15E-04 |
| 27 | GO:0004857: enzyme inhibitor activity | 4.18E-04 |
| 28 | GO:0004751: ribose-5-phosphate isomerase activity | 4.65E-04 |
| 29 | GO:0004324: ferredoxin-NADP+ reductase activity | 4.65E-04 |
| 30 | GO:0003913: DNA photolyase activity | 4.65E-04 |
| 31 | GO:0005504: fatty acid binding | 4.65E-04 |
| 32 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 6.66E-04 |
| 33 | GO:0016851: magnesium chelatase activity | 6.66E-04 |
| 34 | GO:0047134: protein-disulfide reductase activity | 7.05E-04 |
| 35 | GO:0004791: thioredoxin-disulfide reductase activity | 8.75E-04 |
| 36 | GO:0016279: protein-lysine N-methyltransferase activity | 8.84E-04 |
| 37 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.84E-04 |
| 38 | GO:0080032: methyl jasmonate esterase activity | 8.84E-04 |
| 39 | GO:0043495: protein anchor | 8.84E-04 |
| 40 | GO:0045430: chalcone isomerase activity | 8.84E-04 |
| 41 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.13E-03 |
| 42 | GO:0004556: alpha-amylase activity | 1.37E-03 |
| 43 | GO:2001070: starch binding | 1.37E-03 |
| 44 | GO:0080030: methyl indole-3-acetate esterase activity | 1.37E-03 |
| 45 | GO:0004332: fructose-bisphosphate aldolase activity | 1.37E-03 |
| 46 | GO:0051920: peroxiredoxin activity | 1.64E-03 |
| 47 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.64E-03 |
| 48 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.64E-03 |
| 49 | GO:0019899: enzyme binding | 1.92E-03 |
| 50 | GO:0009881: photoreceptor activity | 1.92E-03 |
| 51 | GO:0042802: identical protein binding | 1.97E-03 |
| 52 | GO:0030145: manganese ion binding | 2.13E-03 |
| 53 | GO:0016209: antioxidant activity | 2.22E-03 |
| 54 | GO:0003993: acid phosphatase activity | 2.43E-03 |
| 55 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.87E-03 |
| 56 | GO:0030234: enzyme regulator activity | 3.57E-03 |
| 57 | GO:0000049: tRNA binding | 4.32E-03 |
| 58 | GO:0031072: heat shock protein binding | 4.71E-03 |
| 59 | GO:0008083: growth factor activity | 5.12E-03 |
| 60 | GO:0015035: protein disulfide oxidoreductase activity | 5.87E-03 |
| 61 | GO:0005509: calcium ion binding | 6.20E-03 |
| 62 | GO:0008408: 3'-5' exonuclease activity | 7.34E-03 |
| 63 | GO:0022891: substrate-specific transmembrane transporter activity | 8.30E-03 |
| 64 | GO:0003756: protein disulfide isomerase activity | 8.80E-03 |
| 65 | GO:0008017: microtubule binding | 1.03E-02 |
| 66 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.04E-02 |
| 67 | GO:0016491: oxidoreductase activity | 1.06E-02 |
| 68 | GO:0048038: quinone binding | 1.20E-02 |
| 69 | GO:0016413: O-acetyltransferase activity | 1.50E-02 |
| 70 | GO:0005515: protein binding | 1.66E-02 |
| 71 | GO:0050661: NADP binding | 2.44E-02 |
| 72 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.44E-02 |
| 73 | GO:0004722: protein serine/threonine phosphatase activity | 2.50E-02 |
| 74 | GO:0003924: GTPase activity | 2.81E-02 |
| 75 | GO:0005198: structural molecule activity | 2.90E-02 |
| 76 | GO:0009055: electron carrier activity | 3.01E-02 |
| 77 | GO:0004519: endonuclease activity | 3.05E-02 |
| 78 | GO:0051287: NAD binding | 3.06E-02 |
| 79 | GO:0051082: unfolded protein binding | 4.24E-02 |
| 80 | GO:0008026: ATP-dependent helicase activity | 4.42E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 3 | GO:0017133: mitochondrial electron transfer flavoprotein complex | 0.00E+00 |
| 4 | GO:0043235: receptor complex | 0.00E+00 |
| 5 | GO:0009507: chloroplast | 1.69E-53 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.18E-39 |
| 7 | GO:0009534: chloroplast thylakoid | 4.92E-33 |
| 8 | GO:0009570: chloroplast stroma | 6.90E-24 |
| 9 | GO:0009579: thylakoid | 4.07E-23 |
| 10 | GO:0009941: chloroplast envelope | 7.19E-22 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 5.19E-17 |
| 12 | GO:0031977: thylakoid lumen | 5.06E-12 |
| 13 | GO:0030095: chloroplast photosystem II | 5.77E-12 |
| 14 | GO:0009538: photosystem I reaction center | 4.47E-09 |
| 15 | GO:0010287: plastoglobule | 2.71E-07 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 2.94E-07 |
| 17 | GO:0009523: photosystem II | 1.62E-06 |
| 18 | GO:0019898: extrinsic component of membrane | 1.62E-06 |
| 19 | GO:0010319: stromule | 3.34E-06 |
| 20 | GO:0009522: photosystem I | 5.22E-05 |
| 21 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.20E-04 |
| 22 | GO:0031361: integral component of thylakoid membrane | 1.22E-04 |
| 23 | GO:0000791: euchromatin | 1.22E-04 |
| 24 | GO:0009783: photosystem II antenna complex | 1.22E-04 |
| 25 | GO:0030870: Mre11 complex | 2.82E-04 |
| 26 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.82E-04 |
| 27 | GO:0030076: light-harvesting complex | 3.37E-04 |
| 28 | GO:0005840: ribosome | 4.38E-04 |
| 29 | GO:0042651: thylakoid membrane | 4.61E-04 |
| 30 | GO:0048046: apoplast | 4.63E-04 |
| 31 | GO:0009528: plastid inner membrane | 4.65E-04 |
| 32 | GO:0010007: magnesium chelatase complex | 4.65E-04 |
| 33 | GO:0033281: TAT protein transport complex | 4.65E-04 |
| 34 | GO:0009532: plastid stroma | 5.06E-04 |
| 35 | GO:0031969: chloroplast membrane | 5.63E-04 |
| 36 | GO:0009544: chloroplast ATP synthase complex | 8.84E-04 |
| 37 | GO:0009527: plastid outer membrane | 8.84E-04 |
| 38 | GO:0009517: PSII associated light-harvesting complex II | 8.84E-04 |
| 39 | GO:0000795: synaptonemal complex | 1.12E-03 |
| 40 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.37E-03 |
| 41 | GO:0009707: chloroplast outer membrane | 1.84E-03 |
| 42 | GO:0009533: chloroplast stromal thylakoid | 1.92E-03 |
| 43 | GO:0031305: integral component of mitochondrial inner membrane | 2.22E-03 |
| 44 | GO:0055028: cortical microtubule | 3.57E-03 |
| 45 | GO:0005740: mitochondrial envelope | 3.57E-03 |
| 46 | GO:0032040: small-subunit processome | 4.32E-03 |
| 47 | GO:0009508: plastid chromosome | 4.71E-03 |
| 48 | GO:0000312: plastid small ribosomal subunit | 5.12E-03 |
| 49 | GO:0043234: protein complex | 5.98E-03 |
| 50 | GO:0016020: membrane | 6.32E-03 |
| 51 | GO:0015935: small ribosomal subunit | 7.34E-03 |
| 52 | GO:0009536: plastid | 9.55E-03 |
| 53 | GO:0000785: chromatin | 1.26E-02 |
| 54 | GO:0009295: nucleoid | 1.44E-02 |
| 55 | GO:0005874: microtubule | 1.83E-02 |
| 56 | GO:0015934: large ribosomal subunit | 2.09E-02 |