GO Enrichment Analysis of Co-expressed Genes with
AT3G21540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090070: positive regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 3 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0006364: rRNA processing | 1.09E-14 |
| 5 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.58E-07 |
| 6 | GO:0042254: ribosome biogenesis | 3.04E-07 |
| 7 | GO:0009553: embryo sac development | 4.93E-07 |
| 8 | GO:0010501: RNA secondary structure unwinding | 1.15E-05 |
| 9 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.69E-05 |
| 10 | GO:0000469: cleavage involved in rRNA processing | 6.74E-05 |
| 11 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 6.74E-05 |
| 12 | GO:0030490: maturation of SSU-rRNA | 6.74E-05 |
| 13 | GO:2000232: regulation of rRNA processing | 6.74E-05 |
| 14 | GO:0043985: histone H4-R3 methylation | 6.74E-05 |
| 15 | GO:0080009: mRNA methylation | 1.62E-04 |
| 16 | GO:0034470: ncRNA processing | 1.62E-04 |
| 17 | GO:0006421: asparaginyl-tRNA aminoacylation | 2.75E-04 |
| 18 | GO:0045604: regulation of epidermal cell differentiation | 2.75E-04 |
| 19 | GO:0009561: megagametogenesis | 3.02E-04 |
| 20 | GO:0007276: gamete generation | 3.98E-04 |
| 21 | GO:0048825: cotyledon development | 4.39E-04 |
| 22 | GO:0006479: protein methylation | 5.32E-04 |
| 23 | GO:0046345: abscisic acid catabolic process | 5.32E-04 |
| 24 | GO:0030488: tRNA methylation | 9.79E-04 |
| 25 | GO:0048444: floral organ morphogenesis | 9.79E-04 |
| 26 | GO:0010077: maintenance of inflorescence meristem identity | 9.79E-04 |
| 27 | GO:0045995: regulation of embryonic development | 1.14E-03 |
| 28 | GO:0001522: pseudouridine synthesis | 1.32E-03 |
| 29 | GO:0000028: ribosomal small subunit assembly | 1.32E-03 |
| 30 | GO:0042255: ribosome assembly | 1.32E-03 |
| 31 | GO:0009880: embryonic pattern specification | 1.50E-03 |
| 32 | GO:2000024: regulation of leaf development | 1.69E-03 |
| 33 | GO:0009793: embryo development ending in seed dormancy | 1.81E-03 |
| 34 | GO:0006349: regulation of gene expression by genetic imprinting | 1.89E-03 |
| 35 | GO:0010582: floral meristem determinacy | 2.53E-03 |
| 36 | GO:2000012: regulation of auxin polar transport | 2.76E-03 |
| 37 | GO:0010030: positive regulation of seed germination | 3.23E-03 |
| 38 | GO:0009790: embryo development | 3.79E-03 |
| 39 | GO:0051302: regulation of cell division | 3.99E-03 |
| 40 | GO:0009451: RNA modification | 4.58E-03 |
| 41 | GO:0051301: cell division | 4.59E-03 |
| 42 | GO:0010197: polar nucleus fusion | 5.98E-03 |
| 43 | GO:0009960: endosperm development | 5.98E-03 |
| 44 | GO:0032259: methylation | 1.21E-02 |
| 45 | GO:0006260: DNA replication | 1.74E-02 |
| 46 | GO:0006417: regulation of translation | 2.02E-02 |
| 47 | GO:0009555: pollen development | 2.26E-02 |
| 48 | GO:0006396: RNA processing | 2.47E-02 |
| 49 | GO:0007166: cell surface receptor signaling pathway | 3.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 2 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 3 | GO:0034062: 5'-3' RNA polymerase activity | 0.00E+00 |
| 4 | GO:0000166: nucleotide binding | 1.67E-12 |
| 5 | GO:0003723: RNA binding | 3.17E-09 |
| 6 | GO:0001054: RNA polymerase I activity | 1.05E-06 |
| 7 | GO:0004004: ATP-dependent RNA helicase activity | 1.10E-06 |
| 8 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.79E-06 |
| 9 | GO:0008026: ATP-dependent helicase activity | 1.83E-05 |
| 10 | GO:0030515: snoRNA binding | 2.32E-05 |
| 11 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 6.74E-05 |
| 12 | GO:0043021: ribonucleoprotein complex binding | 1.62E-04 |
| 13 | GO:0004816: asparagine-tRNA ligase activity | 2.75E-04 |
| 14 | GO:0008168: methyltransferase activity | 8.97E-04 |
| 15 | GO:0043022: ribosome binding | 1.32E-03 |
| 16 | GO:0004521: endoribonuclease activity | 2.53E-03 |
| 17 | GO:0001056: RNA polymerase III activity | 2.53E-03 |
| 18 | GO:0003887: DNA-directed DNA polymerase activity | 3.48E-03 |
| 19 | GO:0003713: transcription coactivator activity | 5.98E-03 |
| 20 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.04E-02 |
| 21 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.31E-02 |
| 22 | GO:0004519: endonuclease activity | 1.38E-02 |
| 23 | GO:0004650: polygalacturonase activity | 2.26E-02 |
| 24 | GO:0004386: helicase activity | 2.57E-02 |
| 25 | GO:0016787: hydrolase activity | 2.64E-02 |
| 26 | GO:0016829: lyase activity | 3.00E-02 |
| 27 | GO:0005525: GTP binding | 3.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034455: t-UTP complex | 0.00E+00 |
| 2 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 0.00E+00 |
| 3 | GO:0030688: preribosome, small subunit precursor | 0.00E+00 |
| 4 | GO:0036396: MIS complex | 0.00E+00 |
| 5 | GO:0019034: viral replication complex | 0.00E+00 |
| 6 | GO:0005730: nucleolus | 2.48E-22 |
| 7 | GO:0005634: nucleus | 1.66E-10 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.30E-08 |
| 9 | GO:0070545: PeBoW complex | 2.58E-07 |
| 10 | GO:0005736: DNA-directed RNA polymerase I complex | 4.28E-07 |
| 11 | GO:0032040: small-subunit processome | 9.94E-05 |
| 12 | GO:0030687: preribosome, large subunit precursor | 1.14E-03 |
| 13 | GO:0005763: mitochondrial small ribosomal subunit | 1.69E-03 |
| 14 | GO:0005666: DNA-directed RNA polymerase III complex | 1.89E-03 |
| 15 | GO:0005654: nucleoplasm | 3.17E-03 |
| 16 | GO:0043234: protein complex | 3.48E-03 |
| 17 | GO:0005829: cytosol | 3.60E-03 |
| 18 | GO:0042651: thylakoid membrane | 3.99E-03 |
| 19 | GO:0015935: small ribosomal subunit | 4.26E-03 |
| 20 | GO:0030529: intracellular ribonucleoprotein complex | 8.93E-03 |
| 21 | GO:0015934: large ribosomal subunit | 1.19E-02 |
| 22 | GO:0016607: nuclear speck | 2.17E-02 |
| 23 | GO:0005834: heterotrimeric G-protein complex | 2.22E-02 |