Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G21055

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0006114: glycerol biosynthetic process0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0015979: photosynthesis1.26E-24
10GO:0010027: thylakoid membrane organization1.33E-12
11GO:0090391: granum assembly3.35E-08
12GO:0010196: nonphotochemical quenching5.28E-08
13GO:0032544: plastid translation1.61E-07
14GO:0018298: protein-chromophore linkage2.68E-07
15GO:0009773: photosynthetic electron transport in photosystem I8.32E-07
16GO:0010207: photosystem II assembly2.10E-06
17GO:0018026: peptidyl-lysine monomethylation4.41E-06
18GO:0015995: chlorophyll biosynthetic process5.11E-06
19GO:0009768: photosynthesis, light harvesting in photosystem I5.59E-06
20GO:0010206: photosystem II repair1.73E-05
21GO:0009409: response to cold1.94E-05
22GO:0006412: translation2.59E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.50E-05
24GO:0019684: photosynthesis, light reaction3.87E-05
25GO:0006006: glucose metabolic process5.95E-05
26GO:0009735: response to cytokinin6.14E-05
27GO:0006109: regulation of carbohydrate metabolic process6.26E-05
28GO:0006546: glycine catabolic process6.26E-05
29GO:0019253: reductive pentose-phosphate cycle7.21E-05
30GO:0009658: chloroplast organization1.21E-04
31GO:0042549: photosystem II stabilization1.43E-04
32GO:0045454: cell redox homeostasis2.96E-04
33GO:0000481: maturation of 5S rRNA3.11E-04
34GO:1904964: positive regulation of phytol biosynthetic process3.11E-04
35GO:0065002: intracellular protein transmembrane transport3.11E-04
36GO:0043686: co-translational protein modification3.11E-04
37GO:0043007: maintenance of rDNA3.11E-04
38GO:1902458: positive regulation of stomatal opening3.11E-04
39GO:0034337: RNA folding3.11E-04
40GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.11E-04
41GO:0000476: maturation of 4.5S rRNA3.11E-04
42GO:0000967: rRNA 5'-end processing3.11E-04
43GO:0043953: protein transport by the Tat complex3.11E-04
44GO:1904966: positive regulation of vitamin E biosynthetic process3.11E-04
45GO:0048564: photosystem I assembly3.21E-04
46GO:0006096: glycolytic process5.23E-04
47GO:0010205: photoinhibition5.59E-04
48GO:0006729: tetrahydrobiopterin biosynthetic process6.81E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process6.81E-04
50GO:0030388: fructose 1,6-bisphosphate metabolic process6.81E-04
51GO:0034470: ncRNA processing6.81E-04
52GO:0035304: regulation of protein dephosphorylation6.81E-04
53GO:1902326: positive regulation of chlorophyll biosynthetic process6.81E-04
54GO:0019388: galactose catabolic process6.81E-04
55GO:0018119: peptidyl-cysteine S-nitrosylation7.52E-04
56GO:0009073: aromatic amino acid family biosynthetic process7.52E-04
57GO:0043085: positive regulation of catalytic activity7.52E-04
58GO:0045037: protein import into chloroplast stroma8.60E-04
59GO:0016311: dephosphorylation8.80E-04
60GO:0006094: gluconeogenesis9.73E-04
61GO:0010020: chloroplast fission1.09E-03
62GO:0071492: cellular response to UV-A1.10E-03
63GO:0016050: vesicle organization1.10E-03
64GO:0005977: glycogen metabolic process1.10E-03
65GO:0006000: fructose metabolic process1.10E-03
66GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.58E-03
67GO:0006020: inositol metabolic process1.58E-03
68GO:0071484: cellular response to light intensity1.58E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch1.58E-03
70GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.58E-03
71GO:0009590: detection of gravity1.58E-03
72GO:0042742: defense response to bacterium1.81E-03
73GO:0019915: lipid storage1.82E-03
74GO:0061077: chaperone-mediated protein folding1.82E-03
75GO:0010021: amylopectin biosynthetic process2.12E-03
76GO:0015976: carbon utilization2.12E-03
77GO:0071486: cellular response to high light intensity2.12E-03
78GO:0019464: glycine decarboxylation via glycine cleavage system2.12E-03
79GO:0009765: photosynthesis, light harvesting2.12E-03
80GO:0045727: positive regulation of translation2.12E-03
81GO:0015994: chlorophyll metabolic process2.12E-03
82GO:0022622: root system development2.12E-03
83GO:0006552: leucine catabolic process2.12E-03
84GO:0006021: inositol biosynthetic process2.12E-03
85GO:0010236: plastoquinone biosynthetic process2.71E-03
86GO:0045038: protein import into chloroplast thylakoid membrane2.71E-03
87GO:0031365: N-terminal protein amino acid modification2.71E-03
88GO:0000304: response to singlet oxygen2.71E-03
89GO:0006662: glycerol ether metabolic process2.98E-03
90GO:0042254: ribosome biogenesis3.18E-03
91GO:0042793: transcription from plastid promoter3.35E-03
92GO:0046855: inositol phosphate dephosphorylation3.35E-03
93GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.35E-03
94GO:0019252: starch biosynthetic process3.43E-03
95GO:0030488: tRNA methylation4.03E-03
96GO:0010189: vitamin E biosynthetic process4.03E-03
97GO:0009955: adaxial/abaxial pattern specification4.03E-03
98GO:1901259: chloroplast rRNA processing4.03E-03
99GO:0032880: regulation of protein localization4.76E-03
100GO:0009772: photosynthetic electron transport in photosystem II4.76E-03
101GO:0071446: cellular response to salicylic acid stimulus4.76E-03
102GO:0009645: response to low light intensity stimulus4.76E-03
103GO:0022904: respiratory electron transport chain4.76E-03
104GO:2000070: regulation of response to water deprivation5.53E-03
105GO:0000105: histidine biosynthetic process5.53E-03
106GO:0009231: riboflavin biosynthetic process5.53E-03
107GO:0016559: peroxisome fission5.53E-03
108GO:0005978: glycogen biosynthetic process5.53E-03
109GO:0030091: protein repair5.53E-03
110GO:0009642: response to light intensity5.53E-03
111GO:0032508: DNA duplex unwinding5.53E-03
112GO:2000031: regulation of salicylic acid mediated signaling pathway6.33E-03
113GO:0006002: fructose 6-phosphate metabolic process6.33E-03
114GO:0015996: chlorophyll catabolic process6.33E-03
115GO:0007186: G-protein coupled receptor signaling pathway6.33E-03
116GO:0006754: ATP biosynthetic process7.19E-03
117GO:0006098: pentose-phosphate shunt7.19E-03
118GO:0010218: response to far red light7.65E-03
119GO:0006779: porphyrin-containing compound biosynthetic process8.07E-03
120GO:0009637: response to blue light8.80E-03
121GO:0006949: syncytium formation9.00E-03
122GO:0006782: protoporphyrinogen IX biosynthetic process9.00E-03
123GO:0034599: cellular response to oxidative stress9.20E-03
124GO:0000272: polysaccharide catabolic process9.96E-03
125GO:0009089: lysine biosynthetic process via diaminopimelate9.96E-03
126GO:0006790: sulfur compound metabolic process1.10E-02
127GO:0005983: starch catabolic process1.10E-02
128GO:0010114: response to red light1.14E-02
129GO:0009767: photosynthetic electron transport chain1.20E-02
130GO:0005986: sucrose biosynthetic process1.20E-02
131GO:2000012: regulation of auxin polar transport1.20E-02
132GO:0009644: response to high light intensity1.23E-02
133GO:0006810: transport1.23E-02
134GO:0046686: response to cadmium ion1.37E-02
135GO:0046854: phosphatidylinositol phosphorylation1.42E-02
136GO:0019853: L-ascorbic acid biosynthetic process1.42E-02
137GO:0005985: sucrose metabolic process1.42E-02
138GO:0000162: tryptophan biosynthetic process1.53E-02
139GO:0006289: nucleotide-excision repair1.65E-02
140GO:0019953: sexual reproduction1.77E-02
141GO:0043086: negative regulation of catalytic activity1.82E-02
142GO:0048511: rhythmic process1.89E-02
143GO:0031408: oxylipin biosynthetic process1.89E-02
144GO:0071369: cellular response to ethylene stimulus2.14E-02
145GO:0006012: galactose metabolic process2.14E-02
146GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.14E-02
147GO:0009561: megagametogenesis2.27E-02
148GO:0008284: positive regulation of cell proliferation2.41E-02
149GO:0042631: cellular response to water deprivation2.55E-02
150GO:0010182: sugar mediated signaling pathway2.68E-02
151GO:0009958: positive gravitropism2.68E-02
152GO:0032259: methylation2.82E-02
153GO:0015986: ATP synthesis coupled proton transport2.83E-02
154GO:0042752: regulation of circadian rhythm2.83E-02
155GO:0009646: response to absence of light2.83E-02
156GO:0071554: cell wall organization or biogenesis3.12E-02
157GO:0002229: defense response to oomycetes3.12E-02
158GO:0010193: response to ozone3.12E-02
159GO:0009828: plant-type cell wall loosening3.58E-02
160GO:0009567: double fertilization forming a zygote and endosperm3.58E-02
161GO:0007623: circadian rhythm3.78E-02
162GO:0009817: defense response to fungus, incompatible interaction4.89E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
3GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
4GO:0043136: glycerol-3-phosphatase activity0.00E+00
5GO:0000121: glycerol-1-phosphatase activity0.00E+00
6GO:0010349: L-galactose dehydrogenase activity0.00E+00
7GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
8GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
9GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
10GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
11GO:0048039: ubiquinone binding0.00E+00
12GO:0019843: rRNA binding5.30E-12
13GO:0016168: chlorophyll binding1.35E-07
14GO:0031409: pigment binding3.53E-06
15GO:0003735: structural constituent of ribosome3.83E-06
16GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.41E-06
17GO:0005528: FK506 binding4.47E-06
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.27E-05
19GO:0016279: protein-lysine N-methyltransferase activity6.26E-05
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.26E-05
21GO:0008266: poly(U) RNA binding7.21E-05
22GO:0003959: NADPH dehydrogenase activity9.88E-05
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.11E-04
24GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.11E-04
25GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.11E-04
26GO:0050308: sugar-phosphatase activity3.11E-04
27GO:0010242: oxygen evolving activity3.11E-04
28GO:0019203: carbohydrate phosphatase activity3.11E-04
29GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.11E-04
30GO:0042586: peptide deformylase activity3.11E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.11E-04
32GO:0005509: calcium ion binding4.51E-04
33GO:0008047: enzyme activator activity6.53E-04
34GO:0047746: chlorophyllase activity6.81E-04
35GO:0010297: heteropolysaccharide binding6.81E-04
36GO:0009977: proton motive force dependent protein transmembrane transporter activity6.81E-04
37GO:0004047: aminomethyltransferase activity6.81E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity6.81E-04
39GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.81E-04
40GO:0016630: protochlorophyllide reductase activity6.81E-04
41GO:0008934: inositol monophosphate 1-phosphatase activity6.81E-04
42GO:0052833: inositol monophosphate 4-phosphatase activity6.81E-04
43GO:0004614: phosphoglucomutase activity6.81E-04
44GO:0019156: isoamylase activity6.81E-04
45GO:0030385: ferredoxin:thioredoxin reductase activity6.81E-04
46GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.81E-04
47GO:0031072: heat shock protein binding9.73E-04
48GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.10E-03
49GO:0004324: ferredoxin-NADP+ reductase activity1.10E-03
50GO:0005504: fatty acid binding1.10E-03
51GO:0003913: DNA photolyase activity1.10E-03
52GO:0004751: ribose-5-phosphate isomerase activity1.10E-03
53GO:0004857: enzyme inhibitor activity1.50E-03
54GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.58E-03
55GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.58E-03
56GO:0004375: glycine dehydrogenase (decarboxylating) activity1.58E-03
57GO:0016851: magnesium chelatase activity1.58E-03
58GO:0080032: methyl jasmonate esterase activity2.12E-03
59GO:0045430: chalcone isomerase activity2.12E-03
60GO:0043495: protein anchor2.12E-03
61GO:0022891: substrate-specific transmembrane transporter activity2.17E-03
62GO:0042802: identical protein binding2.29E-03
63GO:0047134: protein-disulfide reductase activity2.56E-03
64GO:0004791: thioredoxin-disulfide reductase activity3.20E-03
65GO:2001070: starch binding3.35E-03
66GO:0080030: methyl indole-3-acetate esterase activity3.35E-03
67GO:0004332: fructose-bisphosphate aldolase activity3.35E-03
68GO:0004556: alpha-amylase activity3.35E-03
69GO:0004462: lactoylglutathione lyase activity3.35E-03
70GO:0048038: quinone binding3.68E-03
71GO:0051082: unfolded protein binding3.97E-03
72GO:0051920: peroxiredoxin activity4.03E-03
73GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.03E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.03E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.03E-03
76GO:0004017: adenylate kinase activity4.03E-03
77GO:0015035: protein disulfide oxidoreductase activity4.12E-03
78GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.19E-03
79GO:0008483: transaminase activity4.73E-03
80GO:0009881: photoreceptor activity4.76E-03
81GO:0019899: enzyme binding4.76E-03
82GO:0016209: antioxidant activity5.53E-03
83GO:0004033: aldo-keto reductase (NADP) activity5.53E-03
84GO:0008173: RNA methyltransferase activity6.33E-03
85GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.19E-03
86GO:0030234: enzyme regulator activity9.00E-03
87GO:0003993: acid phosphatase activity9.20E-03
88GO:0050661: NADP binding1.00E-02
89GO:0004089: carbonate dehydratase activity1.20E-02
90GO:0004565: beta-galactosidase activity1.20E-02
91GO:0005198: structural molecule activity1.28E-02
92GO:0008083: growth factor activity1.31E-02
93GO:0051287: NAD binding1.38E-02
94GO:0030570: pectate lyase activity2.14E-02
95GO:0003756: protein disulfide isomerase activity2.27E-02
96GO:0046872: metal ion binding2.28E-02
97GO:0016787: hydrolase activity2.51E-02
98GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.68E-02
99GO:0050662: coenzyme binding2.83E-02
100GO:0009055: electron carrier activity3.25E-02
101GO:0016413: O-acetyltransferase activity3.89E-02
102GO:0008017: microtubule binding3.96E-02
103GO:0008289: lipid binding4.47E-02
104GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.72E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
5GO:0010368: chloroplast isoamylase complex0.00E+00
6GO:0009515: granal stacked thylakoid0.00E+00
7GO:0009507: chloroplast7.72E-90
8GO:0009535: chloroplast thylakoid membrane4.39E-65
9GO:0009534: chloroplast thylakoid1.14E-58
10GO:0009570: chloroplast stroma1.08E-51
11GO:0009941: chloroplast envelope2.47E-43
12GO:0009579: thylakoid6.61E-42
13GO:0009543: chloroplast thylakoid lumen8.11E-25
14GO:0030095: chloroplast photosystem II1.16E-18
15GO:0031977: thylakoid lumen4.10E-16
16GO:0010287: plastoglobule1.29E-13
17GO:0009654: photosystem II oxygen evolving complex2.98E-13
18GO:0009538: photosystem I reaction center3.13E-12
19GO:0019898: extrinsic component of membrane9.56E-12
20GO:0010319: stromule1.93E-09
21GO:0005840: ribosome1.28E-08
22GO:0048046: apoplast1.14E-07
23GO:0009523: photosystem II1.01E-06
24GO:0000427: plastid-encoded plastid RNA polymerase complex4.41E-06
25GO:0042651: thylakoid membrane5.59E-06
26GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.73E-05
27GO:0009522: photosystem I2.34E-05
28GO:0009508: plastid chromosome5.95E-05
29GO:0031969: chloroplast membrane1.99E-04
30GO:0031361: integral component of thylakoid membrane3.11E-04
31GO:0009782: photosystem I antenna complex3.11E-04
32GO:0009783: photosystem II antenna complex3.11E-04
33GO:0016020: membrane3.54E-04
34GO:0009295: nucleoid5.79E-04
35GO:0009528: plastid inner membrane1.10E-03
36GO:0010007: magnesium chelatase complex1.10E-03
37GO:0033281: TAT protein transport complex1.10E-03
38GO:0030076: light-harvesting complex1.22E-03
39GO:0005960: glycine cleavage complex1.58E-03
40GO:0015935: small ribosomal subunit1.82E-03
41GO:0009532: plastid stroma1.82E-03
42GO:0009544: chloroplast ATP synthase complex2.12E-03
43GO:0009527: plastid outer membrane2.12E-03
44GO:0055035: plastid thylakoid membrane2.71E-03
45GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.35E-03
46GO:0009706: chloroplast inner membrane3.97E-03
47GO:0016272: prefoldin complex4.03E-03
48GO:0009533: chloroplast stromal thylakoid4.76E-03
49GO:0031305: integral component of mitochondrial inner membrane5.53E-03
50GO:0009707: chloroplast outer membrane6.93E-03
51GO:0005763: mitochondrial small ribosomal subunit7.19E-03
52GO:0015934: large ribosomal subunit8.02E-03
53GO:0055028: cortical microtubule9.00E-03
54GO:0005740: mitochondrial envelope9.00E-03
55GO:0012511: monolayer-surrounded lipid storage body9.96E-03
56GO:0032040: small-subunit processome1.10E-02
57GO:0000312: plastid small ribosomal subunit1.31E-02
58GO:0043234: protein complex1.53E-02
59GO:0009536: plastid2.52E-02
60GO:0005623: cell2.82E-02
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Gene type



Gene DE type