co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G20820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0006114: glycerol biosynthetic process	0.00E+00
10	GO:2001294: malonyl-CoA catabolic process	0.00E+00
11	GO:0042493: response to drug	0.00E+00
12	GO:0015979: photosynthesis	4.73E-18
13	GO:0018298: protein-chromophore linkage	8.00E-10
14	GO:0009768: photosynthesis, light harvesting in photosystem I	1.38E-06
15	GO:0010206: photosystem II repair	5.88E-06
16	GO:0019684: photosynthesis, light reaction	1.37E-05
17	GO:0009773: photosynthetic electron transport in photosystem I	1.37E-05
18	GO:0010207: photosystem II assembly	2.65E-05
19	GO:0009765: photosynthesis, light harvesting	2.94E-05
20	GO:0006109: regulation of carbohydrate metabolic process	2.94E-05
21	GO:0042549: photosystem II stabilization	6.98E-05
22	GO:0009645: response to low light intensity stimulus	1.29E-04
23	GO:0065002: intracellular protein transmembrane transport	2.00E-04
24	GO:0043007: maintenance of rDNA	2.00E-04
25	GO:1902458: positive regulation of stomatal opening	2.00E-04
26	GO:0034337: RNA folding	2.00E-04
27	GO:0010362: negative regulation of anion channel activity by blue light	2.00E-04
28	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.00E-04
29	GO:0043953: protein transport by the Tat complex	2.00E-04
30	GO:1904966: positive regulation of vitamin E biosynthetic process	2.00E-04
31	GO:0000481: maturation of 5S rRNA	2.00E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	2.00E-04
33	GO:0009409: response to cold	2.24E-04
34	GO:0010027: thylakoid membrane organization	2.94E-04
35	GO:0010205: photoinhibition	2.97E-04
36	GO:0015995: chlorophyll biosynthetic process	3.65E-04
37	GO:0016311: dephosphorylation	3.91E-04
38	GO:0043085: positive regulation of catalytic activity	4.04E-04
39	GO:0010155: regulation of proton transport	4.48E-04
40	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.48E-04
41	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.48E-04
42	GO:0035304: regulation of protein dephosphorylation	4.48E-04
43	GO:0019388: galactose catabolic process	4.48E-04
44	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.48E-04
45	GO:0006094: gluconeogenesis	5.25E-04
46	GO:0009637: response to blue light	5.66E-04
47	GO:0005977: glycogen metabolic process	7.29E-04
48	GO:0048281: inflorescence morphogenesis	7.29E-04
49	GO:0006000: fructose metabolic process	7.29E-04
50	GO:0006753: nucleoside phosphate metabolic process	7.29E-04
51	GO:0005992: trehalose biosynthetic process	8.13E-04
52	GO:0061077: chaperone-mediated protein folding	9.79E-04
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.04E-03
54	GO:0071484: cellular response to light intensity	1.04E-03
55	GO:0009650: UV protection	1.04E-03
56	GO:0010306: rhamnogalacturonan II biosynthetic process	1.04E-03
57	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.04E-03
58	GO:0010148: transpiration	1.04E-03
59	GO:0009590: detection of gravity	1.04E-03
60	GO:0015976: carbon utilization	1.38E-03
61	GO:0051781: positive regulation of cell division	1.38E-03
62	GO:0019464: glycine decarboxylation via glycine cleavage system	1.38E-03
63	GO:0015994: chlorophyll metabolic process	1.38E-03
64	GO:0006546: glycine catabolic process	1.38E-03
65	GO:0006552: leucine catabolic process	1.38E-03
66	GO:0010021: amylopectin biosynthetic process	1.38E-03
67	GO:0006662: glycerol ether metabolic process	1.58E-03
68	GO:0042742: defense response to bacterium	1.60E-03
69	GO:0016558: protein import into peroxisome matrix	1.76E-03
70	GO:0009904: chloroplast accumulation movement	1.76E-03
71	GO:0045038: protein import into chloroplast thylakoid membrane	1.76E-03
72	GO:0019252: starch biosynthetic process	1.82E-03
73	GO:0003006: developmental process involved in reproduction	2.17E-03
74	GO:0009903: chloroplast avoidance movement	2.60E-03
75	GO:0010103: stomatal complex morphogenesis	3.06E-03
76	GO:0009772: photosynthetic electron transport in photosystem II	3.06E-03
77	GO:0070370: cellular heat acclimation	3.06E-03
78	GO:0010196: nonphotochemical quenching	3.06E-03
79	GO:0015937: coenzyme A biosynthetic process	3.06E-03
80	GO:1900057: positive regulation of leaf senescence	3.06E-03
81	GO:0009769: photosynthesis, light harvesting in photosystem II	3.06E-03
82	GO:0022904: respiratory electron transport chain	3.06E-03
83	GO:0009627: systemic acquired resistance	3.12E-03
84	GO:0006810: transport	3.43E-03
85	GO:0000105: histidine biosynthetic process	3.55E-03
86	GO:0009231: riboflavin biosynthetic process	3.55E-03
87	GO:0030091: protein repair	3.55E-03
88	GO:0005978: glycogen biosynthetic process	3.55E-03
89	GO:0009642: response to light intensity	3.55E-03
90	GO:0032508: DNA duplex unwinding	3.55E-03
91	GO:0070413: trehalose metabolism in response to stress	3.55E-03
92	GO:2000070: regulation of response to water deprivation	3.55E-03
93	GO:0010218: response to far red light	4.02E-03
94	GO:0006002: fructose 6-phosphate metabolic process	4.06E-03
95	GO:0015996: chlorophyll catabolic process	4.06E-03
96	GO:0001558: regulation of cell growth	4.06E-03
97	GO:0009827: plant-type cell wall modification	4.06E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	4.06E-03
99	GO:0006098: pentose-phosphate shunt	4.60E-03
100	GO:0048507: meristem development	4.60E-03
101	GO:0006754: ATP biosynthetic process	4.60E-03
102	GO:0048589: developmental growth	4.60E-03
103	GO:0034599: cellular response to oxidative stress	4.82E-03
104	GO:0009638: phototropism	5.15E-03
105	GO:0006949: syncytium formation	5.74E-03
106	GO:0010114: response to red light	5.94E-03
107	GO:0009735: response to cytokinin	6.04E-03
108	GO:0009089: lysine biosynthetic process via diaminopimelate	6.34E-03
109	GO:0009073: aromatic amino acid family biosynthetic process	6.34E-03
110	GO:0009644: response to high light intensity	6.43E-03
111	GO:0010152: pollen maturation	6.96E-03
112	GO:0005983: starch catabolic process	6.96E-03
113	GO:0045037: protein import into chloroplast stroma	6.96E-03
114	GO:0010582: floral meristem determinacy	6.96E-03
115	GO:0009664: plant-type cell wall organization	7.46E-03
116	GO:0009767: photosynthetic electron transport chain	7.61E-03
117	GO:0005986: sucrose biosynthetic process	7.61E-03
118	GO:0009785: blue light signaling pathway	7.61E-03
119	GO:0006006: glucose metabolic process	7.61E-03
120	GO:0006302: double-strand break repair	8.28E-03
121	GO:0048467: gynoecium development	8.28E-03
122	GO:0019253: reductive pentose-phosphate cycle	8.28E-03
123	GO:0005985: sucrose metabolic process	8.97E-03
124	GO:0010030: positive regulation of seed germination	8.97E-03
125	GO:0006096: glycolytic process	9.48E-03
126	GO:0043086: negative regulation of catalytic activity	9.48E-03
127	GO:0019762: glucosinolate catabolic process	9.68E-03
128	GO:0000162: tryptophan biosynthetic process	9.68E-03
129	GO:0045454: cell redox homeostasis	1.01E-02
130	GO:0009944: polarity specification of adaxial/abaxial axis	1.04E-02
131	GO:0051302: regulation of cell division	1.12E-02
132	GO:0048511: rhythmic process	1.19E-02
133	GO:0009269: response to desiccation	1.19E-02
134	GO:0051321: meiotic cell cycle	1.19E-02
135	GO:0048278: vesicle docking	1.19E-02
136	GO:0005975: carbohydrate metabolic process	1.20E-02
137	GO:0035428: hexose transmembrane transport	1.27E-02
138	GO:0006281: DNA repair	1.32E-02
139	GO:0001944: vasculature development	1.35E-02
140	GO:0009625: response to insect	1.35E-02
141	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.35E-02
142	GO:0009411: response to UV	1.35E-02
143	GO:0071369: cellular response to ethylene stimulus	1.35E-02
144	GO:0048443: stamen development	1.43E-02
145	GO:0009561: megagametogenesis	1.43E-02
146	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.52E-02
147	GO:0042631: cellular response to water deprivation	1.60E-02
148	GO:0010182: sugar mediated signaling pathway	1.69E-02
149	GO:0048868: pollen tube development	1.69E-02
150	GO:0046323: glucose import	1.69E-02
151	GO:0061025: membrane fusion	1.78E-02
152	GO:0042752: regulation of circadian rhythm	1.78E-02
153	GO:0009646: response to absence of light	1.78E-02
154	GO:0015986: ATP synthesis coupled proton transport	1.78E-02
155	GO:0071554: cell wall organization or biogenesis	1.97E-02
156	GO:0006635: fatty acid beta-oxidation	1.97E-02
157	GO:0032502: developmental process	2.06E-02
158	GO:0010583: response to cyclopentenone	2.06E-02
159	GO:0009828: plant-type cell wall loosening	2.25E-02
160	GO:0009567: double fertilization forming a zygote and endosperm	2.25E-02
161	GO:0006906: vesicle fusion	2.76E-02
162	GO:0010411: xyloglucan metabolic process	2.87E-02
163	GO:0000160: phosphorelay signal transduction system	3.20E-02
164	GO:0009813: flavonoid biosynthetic process	3.20E-02
165	GO:0010119: regulation of stomatal movement	3.42E-02
166	GO:0009867: jasmonic acid mediated signaling pathway	3.65E-02
167	GO:0055085: transmembrane transport	3.65E-02
168	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.93E-02
169	GO:0006839: mitochondrial transport	4.01E-02
170	GO:0006887: exocytosis	4.13E-02
171	GO:0006631: fatty acid metabolic process	4.13E-02
172	GO:0042546: cell wall biogenesis	4.50E-02
173	GO:0009965: leaf morphogenesis	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
3	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
9	GO:0048039: ubiquinone binding	0.00E+00
10	GO:0042623: ATPase activity, coupled	0.00E+00
11	GO:0016168: chlorophyll binding	7.15E-07
12	GO:0031409: pigment binding	8.57E-07
13	GO:0008266: poly(U) RNA binding	2.65E-05
14	GO:0003959: NADPH dehydrogenase activity	4.73E-05
15	GO:0010945: CoA pyrophosphatase activity	2.00E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.00E-04
17	GO:0050308: sugar-phosphatase activity	2.00E-04
18	GO:0010242: oxygen evolving activity	2.00E-04
19	GO:0019203: carbohydrate phosphatase activity	2.00E-04
20	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.00E-04
21	GO:0008047: enzyme activator activity	3.48E-04
22	GO:0004805: trehalose-phosphatase activity	3.48E-04
23	GO:0047746: chlorophyllase activity	4.48E-04
24	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.48E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.48E-04
26	GO:0016630: protochlorophyllide reductase activity	4.48E-04
27	GO:0008805: carbon-monoxide oxygenase activity	4.48E-04
28	GO:0004614: phosphoglucomutase activity	4.48E-04
29	GO:0019156: isoamylase activity	4.48E-04
30	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.48E-04
31	GO:0031072: heat shock protein binding	5.25E-04
32	GO:0004565: beta-galactosidase activity	5.25E-04
33	GO:0004324: ferredoxin-NADP+ reductase activity	7.29E-04
34	GO:0005504: fatty acid binding	7.29E-04
35	GO:0003913: DNA photolyase activity	7.29E-04
36	GO:0004857: enzyme inhibitor activity	8.13E-04
37	GO:0005528: FK506 binding	8.13E-04
38	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.42E-04
39	GO:0009882: blue light photoreceptor activity	1.04E-03
40	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.04E-03
41	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.04E-03
42	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.04E-03
43	GO:0016851: magnesium chelatase activity	1.04E-03
44	GO:0022891: substrate-specific transmembrane transporter activity	1.16E-03
45	GO:0047134: protein-disulfide reductase activity	1.36E-03
46	GO:0010011: auxin binding	1.38E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.38E-03
48	GO:0080032: methyl jasmonate esterase activity	1.38E-03
49	GO:0045430: chalcone isomerase activity	1.38E-03
50	GO:0019199: transmembrane receptor protein kinase activity	1.38E-03
51	GO:0043495: protein anchor	1.38E-03
52	GO:0042277: peptide binding	1.38E-03
53	GO:0004791: thioredoxin-disulfide reductase activity	1.70E-03
54	GO:2001070: starch binding	2.17E-03
55	GO:0080030: methyl indole-3-acetate esterase activity	2.17E-03
56	GO:0004332: fructose-bisphosphate aldolase activity	2.17E-03
57	GO:0000210: NAD+ diphosphatase activity	2.17E-03
58	GO:0004556: alpha-amylase activity	2.17E-03
59	GO:0004462: lactoylglutathione lyase activity	2.17E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.21E-03
61	GO:0019843: rRNA binding	2.33E-03
62	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.60E-03
63	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.60E-03
64	GO:0009881: photoreceptor activity	3.06E-03
65	GO:0019899: enzyme binding	3.06E-03
66	GO:0005337: nucleoside transmembrane transporter activity	3.55E-03
67	GO:0030145: manganese ion binding	4.21E-03
68	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.60E-03
69	GO:0042802: identical protein binding	4.75E-03
70	GO:0003993: acid phosphatase activity	4.82E-03
71	GO:0030234: enzyme regulator activity	5.74E-03
72	GO:0004089: carbonate dehydratase activity	7.61E-03
73	GO:0000155: phosphorelay sensor kinase activity	7.61E-03
74	GO:0008081: phosphoric diester hydrolase activity	7.61E-03
75	GO:0046872: metal ion binding	9.15E-03
76	GO:0051082: unfolded protein binding	1.14E-02
77	GO:0015035: protein disulfide oxidoreductase activity	1.18E-02
78	GO:0008408: 3'-5' exonuclease activity	1.19E-02
79	GO:0003727: single-stranded RNA binding	1.43E-02
80	GO:0003756: protein disulfide isomerase activity	1.43E-02
81	GO:0004252: serine-type endopeptidase activity	1.59E-02
82	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.69E-02
83	GO:0005355: glucose transmembrane transporter activity	1.78E-02
84	GO:0005509: calcium ion binding	1.78E-02
85	GO:0010181: FMN binding	1.78E-02
86	GO:0003735: structural constituent of ribosome	1.90E-02
87	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.97E-02
88	GO:0048038: quinone binding	1.97E-02
89	GO:0016791: phosphatase activity	2.25E-02
90	GO:0016413: O-acetyltransferase activity	2.45E-02
91	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.87E-02
92	GO:0008236: serine-type peptidase activity	2.98E-02
93	GO:0000287: magnesium ion binding	3.01E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	3.13E-02
95	GO:0000149: SNARE binding	3.89E-02
96	GO:0051539: 4 iron, 4 sulfur cluster binding	4.01E-02
97	GO:0052689: carboxylic ester hydrolase activity	4.19E-02
98	GO:0004185: serine-type carboxypeptidase activity	4.37E-02
99	GO:0005484: SNAP receptor activity	4.37E-02
100	GO:0043621: protein self-association	4.62E-02
101	GO:0004722: protein serine/threonine phosphatase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0010368: chloroplast isoamylase complex	0.00E+00
6	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
7	GO:0009535: chloroplast thylakoid membrane	2.19E-35
8	GO:0009507: chloroplast	1.28E-33
9	GO:0009534: chloroplast thylakoid	1.72E-30
10	GO:0009579: thylakoid	1.78E-21
11	GO:0009941: chloroplast envelope	7.32E-17
12	GO:0009570: chloroplast stroma	2.74E-16
13	GO:0009543: chloroplast thylakoid lumen	3.68E-15
14	GO:0030095: chloroplast photosystem II	3.97E-13
15	GO:0031977: thylakoid lumen	3.80E-09
16	GO:0010287: plastoglobule	4.12E-09
17	GO:0048046: apoplast	7.72E-09
18	GO:0009538: photosystem I reaction center	2.19E-08
19	GO:0009654: photosystem II oxygen evolving complex	1.38E-06
20	GO:0009522: photosystem I	6.19E-06
21	GO:0009523: photosystem II	7.23E-06
22	GO:0019898: extrinsic component of membrane	7.23E-06
23	GO:0010319: stromule	1.44E-05
24	GO:0030076: light-harvesting complex	3.21E-05
25	GO:0031361: integral component of thylakoid membrane	2.00E-04
26	GO:0009782: photosystem I antenna complex	2.00E-04
27	GO:0000791: euchromatin	2.00E-04
28	GO:0009783: photosystem II antenna complex	2.00E-04
29	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.49E-04
30	GO:0030870: Mre11 complex	4.48E-04
31	GO:0009528: plastid inner membrane	7.29E-04
32	GO:0033281: TAT protein transport complex	7.29E-04
33	GO:0010007: magnesium chelatase complex	7.29E-04
34	GO:0042651: thylakoid membrane	8.95E-04
35	GO:0005960: glycine cleavage complex	1.04E-03
36	GO:0009527: plastid outer membrane	1.38E-03
37	GO:0009898: cytoplasmic side of plasma membrane	1.38E-03
38	GO:0009517: PSII associated light-harvesting complex II	1.38E-03
39	GO:0009544: chloroplast ATP synthase complex	1.38E-03
40	GO:0055035: plastid thylakoid membrane	1.76E-03
41	GO:0000795: synaptonemal complex	1.76E-03
42	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.17E-03
43	GO:0005778: peroxisomal membrane	2.50E-03
44	GO:0009986: cell surface	3.06E-03
45	GO:0009533: chloroplast stromal thylakoid	3.06E-03
46	GO:0031305: integral component of mitochondrial inner membrane	3.55E-03
47	GO:0008180: COP9 signalosome	4.60E-03
48	GO:0016021: integral component of membrane	4.69E-03
49	GO:0055028: cortical microtubule	5.74E-03
50	GO:0005740: mitochondrial envelope	5.74E-03
51	GO:0032040: small-subunit processome	6.96E-03
52	GO:0009508: plastid chromosome	7.61E-03
53	GO:0031969: chloroplast membrane	8.02E-03
54	GO:0015935: small ribosomal subunit	1.19E-02
55	GO:0009532: plastid stroma	1.19E-02
56	GO:0005773: vacuole	1.62E-02
57	GO:0009504: cell plate	1.87E-02
58	GO:0000785: chromatin	2.06E-02
59	GO:0005840: ribosome	2.15E-02
60	GO:0009295: nucleoid	2.35E-02
61	GO:0022626: cytosolic ribosome	2.57E-02
62	GO:0009505: plant-type cell wall	2.80E-02
63	GO:0016020: membrane	3.00E-02
64	GO:0019005: SCF ubiquitin ligase complex	3.09E-02
65	GO:0009707: chloroplast outer membrane	3.09E-02
66	GO:0015934: large ribosomal subunit	3.42E-02
67	GO:0031201: SNARE complex	4.13E-02
68	GO:0031225: anchored component of membrane	4.69E-02