co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G19800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0009106: lipoate metabolic process	0.00E+00
4	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
5	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.07E-07
6	GO:0080005: photosystem stoichiometry adjustment	7.07E-07
7	GO:0090307: mitotic spindle assembly	6.29E-06
8	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	6.29E-06
9	GO:0009902: chloroplast relocation	1.18E-05
10	GO:0009658: chloroplast organization	4.17E-05
11	GO:0071482: cellular response to light stimulus	9.23E-05
12	GO:0034970: histone H3-R2 methylation	1.18E-04
13	GO:0010362: negative regulation of anion channel activity by blue light	1.18E-04
14	GO:0034972: histone H3-R26 methylation	1.18E-04
15	GO:1902265: abscisic acid homeostasis	1.18E-04
16	GO:0051418: microtubule nucleation by microtubule organizing center	1.18E-04
17	GO:0034971: histone H3-R17 methylation	1.18E-04
18	GO:0042371: vitamin K biosynthetic process	1.18E-04
19	GO:0071454: cellular response to anoxia	1.18E-04
20	GO:0071461: cellular response to redox state	1.18E-04
21	GO:0034080: CENP-A containing nucleosome assembly	1.18E-04
22	GO:0009098: leucine biosynthetic process	1.37E-04
23	GO:0006352: DNA-templated transcription, initiation	1.91E-04
24	GO:0045037: protein import into chloroplast stroma	2.21E-04
25	GO:0033566: gamma-tubulin complex localization	2.73E-04
26	GO:0048255: mRNA stabilization	2.73E-04
27	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.73E-04
28	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.73E-04
29	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.73E-04
30	GO:0009744: response to sucrose	3.05E-04
31	GO:0090351: seedling development	3.23E-04
32	GO:0031022: nuclear migration along microfilament	4.52E-04
33	GO:0009150: purine ribonucleotide metabolic process	4.52E-04
34	GO:0006696: ergosterol biosynthetic process	4.52E-04
35	GO:0007052: mitotic spindle organization	4.52E-04
36	GO:0033014: tetrapyrrole biosynthetic process	6.47E-04
37	GO:2001141: regulation of RNA biosynthetic process	6.47E-04
38	GO:0034508: centromere complex assembly	6.47E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.47E-04
40	GO:0009067: aspartate family amino acid biosynthetic process	6.47E-04
41	GO:0010371: regulation of gibberellin biosynthetic process	6.47E-04
42	GO:0031122: cytoplasmic microtubule organization	8.60E-04
43	GO:0071483: cellular response to blue light	8.60E-04
44	GO:0009107: lipoate biosynthetic process	1.08E-03
45	GO:0016123: xanthophyll biosynthetic process	1.08E-03
46	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.33E-03
47	GO:0010228: vegetative to reproductive phase transition of meristem	1.46E-03
48	GO:0009903: chloroplast avoidance movement	1.59E-03
49	GO:0009088: threonine biosynthetic process	1.59E-03
50	GO:0010019: chloroplast-nucleus signaling pathway	1.59E-03
51	GO:0009772: photosynthetic electron transport in photosystem II	1.87E-03
52	GO:1900056: negative regulation of leaf senescence	1.87E-03
53	GO:0048564: photosystem I assembly	2.16E-03
54	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.16E-03
55	GO:0042255: ribosome assembly	2.16E-03
56	GO:0006353: DNA-templated transcription, termination	2.16E-03
57	GO:0009704: de-etiolation	2.16E-03
58	GO:0009637: response to blue light	2.23E-03
59	GO:0022900: electron transport chain	2.46E-03
60	GO:0009051: pentose-phosphate shunt, oxidative branch	2.78E-03
61	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.78E-03
62	GO:0006783: heme biosynthetic process	2.78E-03
63	GO:0009638: phototropism	3.12E-03
64	GO:0006779: porphyrin-containing compound biosynthetic process	3.12E-03
65	GO:0010380: regulation of chlorophyll biosynthetic process	3.12E-03
66	GO:0045036: protein targeting to chloroplast	3.46E-03
67	GO:0009773: photosynthetic electron transport in photosystem I	3.82E-03
68	GO:0008285: negative regulation of cell proliferation	3.82E-03
69	GO:0009089: lysine biosynthetic process via diaminopimelate	3.82E-03
70	GO:0043085: positive regulation of catalytic activity	3.82E-03
71	GO:0051603: proteolysis involved in cellular protein catabolic process	3.98E-03
72	GO:0006790: sulfur compound metabolic process	4.19E-03
73	GO:0030048: actin filament-based movement	4.57E-03
74	GO:0006006: glucose metabolic process	4.57E-03
75	GO:0009725: response to hormone	4.57E-03
76	GO:0009767: photosynthetic electron transport chain	4.57E-03
77	GO:0034605: cellular response to heat	4.97E-03
78	GO:0019253: reductive pentose-phosphate cycle	4.97E-03
79	GO:0010207: photosystem II assembly	4.97E-03
80	GO:0007017: microtubule-based process	6.66E-03
81	GO:0010073: meristem maintenance	6.66E-03
82	GO:0006730: one-carbon metabolic process	7.57E-03
83	GO:0016226: iron-sulfur cluster assembly	7.57E-03
84	GO:0080092: regulation of pollen tube growth	7.57E-03
85	GO:0010227: floral organ abscission	8.05E-03
86	GO:0016117: carotenoid biosynthetic process	9.02E-03
87	GO:0070417: cellular response to cold	9.02E-03
88	GO:0009735: response to cytokinin	9.51E-03
89	GO:0000226: microtubule cytoskeleton organization	9.53E-03
90	GO:0008033: tRNA processing	9.53E-03
91	GO:0010118: stomatal movement	9.53E-03
92	GO:0009451: RNA modification	9.65E-03
93	GO:0015986: ATP synthesis coupled proton transport	1.06E-02
94	GO:0009791: post-embryonic development	1.11E-02
95	GO:0019761: glucosinolate biosynthetic process	1.22E-02
96	GO:0032502: developmental process	1.22E-02
97	GO:0071805: potassium ion transmembrane transport	1.39E-02
98	GO:0016126: sterol biosynthetic process	1.51E-02
99	GO:0010029: regulation of seed germination	1.57E-02
100	GO:0009816: defense response to bacterium, incompatible interaction	1.57E-02
101	GO:0015995: chlorophyll biosynthetic process	1.70E-02
102	GO:0018298: protein-chromophore linkage	1.82E-02
103	GO:0000160: phosphorelay signal transduction system	1.89E-02
104	GO:0046777: protein autophosphorylation	1.94E-02
105	GO:0009910: negative regulation of flower development	2.02E-02
106	GO:0009853: photorespiration	2.16E-02
107	GO:0009640: photomorphogenesis	2.59E-02
108	GO:0008152: metabolic process	2.96E-02
109	GO:0006813: potassium ion transport	3.20E-02
110	GO:0006417: regulation of translation	3.44E-02
111	GO:0009909: regulation of flower development	3.44E-02
112	GO:0006508: proteolysis	3.50E-02
113	GO:0006810: transport	4.18E-02
114	GO:0009416: response to light stimulus	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
4	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
5	GO:0003862: 3-isopropylmalate dehydrogenase activity	7.07E-07
6	GO:0016987: sigma factor activity	1.18E-05
7	GO:0043015: gamma-tubulin binding	1.18E-05
8	GO:0001053: plastid sigma factor activity	1.18E-05
9	GO:0046906: tetrapyrrole binding	1.18E-04
10	GO:0004325: ferrochelatase activity	1.18E-04
11	GO:0051996: squalene synthase activity	1.18E-04
12	GO:0030941: chloroplast targeting sequence binding	1.18E-04
13	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.73E-04
14	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.73E-04
15	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.73E-04
16	GO:0017118: lipoyltransferase activity	2.73E-04
17	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.73E-04
18	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.73E-04
19	GO:0016415: octanoyltransferase activity	2.73E-04
20	GO:0004180: carboxypeptidase activity	4.52E-04
21	GO:0032947: protein complex scaffold	4.52E-04
22	GO:0004848: ureidoglycolate hydrolase activity	4.52E-04
23	GO:0008469: histone-arginine N-methyltransferase activity	4.52E-04
24	GO:0004072: aspartate kinase activity	6.47E-04
25	GO:0000254: C-4 methylsterol oxidase activity	6.47E-04
26	GO:0016851: magnesium chelatase activity	6.47E-04
27	GO:0009882: blue light photoreceptor activity	6.47E-04
28	GO:0047627: adenylylsulfatase activity	6.47E-04
29	GO:0010181: FMN binding	8.40E-04
30	GO:0004345: glucose-6-phosphate dehydrogenase activity	8.60E-04
31	GO:0051861: glycolipid binding	8.60E-04
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.60E-04
33	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	8.60E-04
34	GO:0048038: quinone binding	9.58E-04
35	GO:0004518: nuclease activity	1.02E-03
36	GO:0051011: microtubule minus-end binding	1.08E-03
37	GO:0016597: amino acid binding	1.29E-03
38	GO:0015631: tubulin binding	1.59E-03
39	GO:0019899: enzyme binding	1.87E-03
40	GO:0071949: FAD binding	2.78E-03
41	GO:0004185: serine-type carboxypeptidase activity	2.86E-03
42	GO:0051287: NAD binding	3.46E-03
43	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.82E-03
44	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.84E-03
45	GO:0031072: heat shock protein binding	4.57E-03
46	GO:0000155: phosphorelay sensor kinase activity	4.57E-03
47	GO:0051536: iron-sulfur cluster binding	6.22E-03
48	GO:0015079: potassium ion transmembrane transporter activity	6.66E-03
49	GO:0004176: ATP-dependent peptidase activity	7.11E-03
50	GO:0008565: protein transporter activity	8.17E-03
51	GO:0003727: single-stranded RNA binding	8.53E-03
52	GO:0016491: oxidoreductase activity	9.94E-03
53	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.00E-02
54	GO:0004872: receptor activity	1.11E-02
55	GO:0008237: metallopeptidase activity	1.39E-02
56	GO:0005200: structural constituent of cytoskeleton	1.39E-02
57	GO:0000287: magnesium ion binding	1.44E-02
58	GO:0008236: serine-type peptidase activity	1.76E-02
59	GO:0004222: metalloendopeptidase activity	1.96E-02
60	GO:0050661: NADP binding	2.37E-02
61	GO:0042393: histone binding	2.37E-02
62	GO:0005506: iron ion binding	2.55E-02
63	GO:0051537: 2 iron, 2 sulfur cluster binding	2.73E-02
64	GO:0005198: structural molecule activity	2.81E-02
65	GO:0004519: endonuclease activity	2.92E-02
66	GO:0003690: double-stranded DNA binding	3.28E-02
67	GO:0003777: microtubule motor activity	3.44E-02
68	GO:0051082: unfolded protein binding	4.11E-02
69	GO:0016746: transferase activity, transferring acyl groups	4.19E-02
70	GO:0019843: rRNA binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	9.19E-19
2	GO:0009535: chloroplast thylakoid membrane	1.34E-11
3	GO:0008274: gamma-tubulin ring complex	7.07E-07
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.62E-06
5	GO:0000923: equatorial microtubule organizing center	6.29E-06
6	GO:0009570: chloroplast stroma	6.91E-06
7	GO:0009536: plastid	1.12E-04
8	GO:0031021: interphase microtubule organizing center	1.18E-04
9	GO:0005640: nuclear outer membrane	4.52E-04
10	GO:0030286: dynein complex	8.60E-04
11	GO:0005828: kinetochore microtubule	8.60E-04
12	GO:0000930: gamma-tubulin complex	8.60E-04
13	GO:0005623: cell	9.58E-04
14	GO:0072686: mitotic spindle	1.08E-03
15	GO:0000776: kinetochore	1.08E-03
16	GO:0055035: plastid thylakoid membrane	1.08E-03
17	GO:0010319: stromule	1.22E-03
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.33E-03
19	GO:0031359: integral component of chloroplast outer membrane	1.87E-03
20	GO:0000922: spindle pole	2.78E-03
21	GO:0009534: chloroplast thylakoid	2.99E-03
22	GO:0031969: chloroplast membrane	3.14E-03
23	GO:0016324: apical plasma membrane	3.46E-03
24	GO:0009574: preprophase band	4.57E-03
25	GO:0009706: chloroplast inner membrane	5.46E-03
26	GO:0043234: protein complex	5.79E-03
27	GO:0005875: microtubule associated complex	5.79E-03
28	GO:0010287: plastoglobule	6.47E-03
29	GO:0042651: thylakoid membrane	6.66E-03
30	GO:0009543: chloroplast thylakoid lumen	6.83E-03
31	GO:0009579: thylakoid	1.34E-02
32	GO:0009707: chloroplast outer membrane	1.82E-02
33	GO:0005622: intracellular	2.21E-02
34	GO:0009941: chloroplast envelope	2.31E-02
35	GO:0031966: mitochondrial membrane	3.04E-02
36	GO:0005635: nuclear envelope	3.36E-02
37	GO:0009524: phragmoplast	5.00E-02