co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G19020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
2	GO:0046680: response to DDT	0.00E+00
3	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
4	GO:0042430: indole-containing compound metabolic process	0.00E+00
5	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
6	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
7	GO:1902325: negative regulation of chlorophyll biosynthetic process	0.00E+00
8	GO:0072722: response to amitrole	0.00E+00
9	GO:0010055: atrichoblast differentiation	0.00E+00
10	GO:0055114: oxidation-reduction process	1.42E-08
11	GO:0042744: hydrogen peroxide catabolic process	7.62E-07
12	GO:0006979: response to oxidative stress	1.86E-06
13	GO:0006564: L-serine biosynthetic process	2.48E-05
14	GO:0002238: response to molecule of fungal origin	3.71E-05
15	GO:0010019: chloroplast-nucleus signaling pathway	5.23E-05
16	GO:0044550: secondary metabolite biosynthetic process	1.22E-04
17	GO:0009820: alkaloid metabolic process	1.35E-04
18	GO:0010365: positive regulation of ethylene biosynthetic process	1.35E-04
19	GO:1901349: glucosinolate transport	1.35E-04
20	GO:0000032: cell wall mannoprotein biosynthetic process	1.35E-04
21	GO:0090449: phloem glucosinolate loading	1.35E-04
22	GO:0042964: thioredoxin reduction	1.35E-04
23	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.35E-04
24	GO:0006569: tryptophan catabolic process	1.35E-04
25	GO:0032491: detection of molecule of fungal origin	1.35E-04
26	GO:0019605: butyrate metabolic process	1.35E-04
27	GO:0006106: fumarate metabolic process	1.35E-04
28	GO:0006083: acetate metabolic process	1.35E-04
29	GO:0032107: regulation of response to nutrient levels	1.35E-04
30	GO:0006032: chitin catabolic process	2.00E-04
31	GO:0000272: polysaccharide catabolic process	2.34E-04
32	GO:0006099: tricarboxylic acid cycle	2.98E-04
33	GO:0009915: phloem sucrose loading	3.11E-04
34	GO:0002215: defense response to nematode	3.11E-04
35	GO:0002240: response to molecule of oomycetes origin	3.11E-04
36	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.11E-04
37	GO:0046686: response to cadmium ion	3.34E-04
38	GO:0002237: response to molecule of bacterial origin	3.49E-04
39	GO:0010272: response to silver ion	5.13E-04
40	GO:0033591: response to L-ascorbic acid	5.13E-04
41	GO:0009809: lignin biosynthetic process	5.74E-04
42	GO:0016998: cell wall macromolecule catabolic process	5.84E-04
43	GO:0009625: response to insect	6.94E-04
44	GO:0009413: response to flooding	7.34E-04
45	GO:0009298: GDP-mannose biosynthetic process	7.34E-04
46	GO:0051365: cellular response to potassium ion starvation	9.73E-04
47	GO:0006869: lipid transport	1.06E-03
48	GO:0006623: protein targeting to vacuole	1.08E-03
49	GO:0006097: glyoxylate cycle	1.23E-03
50	GO:0005975: carbohydrate metabolic process	1.23E-03
51	GO:1901657: glycosyl compound metabolic process	1.30E-03
52	GO:0009228: thiamine biosynthetic process	1.51E-03
53	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.81E-03
54	GO:0030643: cellular phosphate ion homeostasis	1.81E-03
55	GO:0010189: vitamin E biosynthetic process	1.81E-03
56	GO:0009648: photoperiodism	1.81E-03
57	GO:0009651: response to salt stress	1.83E-03
58	GO:0016311: dephosphorylation	2.03E-03
59	GO:0050829: defense response to Gram-negative bacterium	2.12E-03
60	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.12E-03
61	GO:0009817: defense response to fungus, incompatible interaction	2.14E-03
62	GO:0009617: response to bacterium	2.20E-03
63	GO:0009642: response to light intensity	2.46E-03
64	GO:0006102: isocitrate metabolic process	2.46E-03
65	GO:0010497: plasmodesmata-mediated intercellular transport	2.81E-03
66	GO:0019430: removal of superoxide radicals	2.81E-03
67	GO:0010120: camalexin biosynthetic process	2.81E-03
68	GO:0010204: defense response signaling pathway, resistance gene-independent	2.81E-03
69	GO:0006972: hyperosmotic response	2.81E-03
70	GO:0009611: response to wounding	3.12E-03
71	GO:0010112: regulation of systemic acquired resistance	3.17E-03
72	GO:0042542: response to hydrogen peroxide	3.33E-03
73	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.55E-03
74	GO:2000280: regulation of root development	3.55E-03
75	GO:0010192: mucilage biosynthetic process	3.95E-03
76	GO:0006913: nucleocytoplasmic transport	4.36E-03
77	GO:0009682: induced systemic resistance	4.36E-03
78	GO:0052544: defense response by callose deposition in cell wall	4.36E-03
79	GO:0072593: reactive oxygen species metabolic process	4.36E-03
80	GO:0009684: indoleacetic acid biosynthetic process	4.36E-03
81	GO:0012501: programmed cell death	4.79E-03
82	GO:0006820: anion transport	4.79E-03
83	GO:0071365: cellular response to auxin stimulus	4.79E-03
84	GO:0006108: malate metabolic process	5.22E-03
85	GO:0009266: response to temperature stimulus	5.68E-03
86	GO:0009620: response to fungus	6.05E-03
87	GO:0042343: indole glucosinolate metabolic process	6.14E-03
88	GO:0019853: L-ascorbic acid biosynthetic process	6.14E-03
89	GO:0000162: tryptophan biosynthetic process	6.62E-03
90	GO:0009624: response to nematode	6.62E-03
91	GO:0006636: unsaturated fatty acid biosynthetic process	6.62E-03
92	GO:0006874: cellular calcium ion homeostasis	7.62E-03
93	GO:0048511: rhythmic process	8.14E-03
94	GO:0098542: defense response to other organism	8.14E-03
95	GO:0030245: cellulose catabolic process	8.67E-03
96	GO:0010017: red or far-red light signaling pathway	8.67E-03
97	GO:0071456: cellular response to hypoxia	8.67E-03
98	GO:0009058: biosynthetic process	8.74E-03
99	GO:0006012: galactose metabolic process	9.21E-03
100	GO:0009561: megagametogenesis	9.77E-03
101	GO:0006817: phosphate ion transport	9.77E-03
102	GO:0010089: xylem development	9.77E-03
103	GO:0008284: positive regulation of cell proliferation	1.03E-02
104	GO:0040008: regulation of growth	1.09E-02
105	GO:0042631: cellular response to water deprivation	1.09E-02
106	GO:0010118: stomatal movement	1.09E-02
107	GO:0006885: regulation of pH	1.15E-02
108	GO:0048868: pollen tube development	1.15E-02
109	GO:0009646: response to absence of light	1.21E-02
110	GO:0002229: defense response to oomycetes	1.34E-02
111	GO:0000302: response to reactive oxygen species	1.34E-02
112	GO:0019761: glucosinolate biosynthetic process	1.40E-02
113	GO:0030163: protein catabolic process	1.46E-02
114	GO:0009615: response to virus	1.73E-02
115	GO:0009627: systemic acquired resistance	1.88E-02
116	GO:0016049: cell growth	2.02E-02
117	GO:0006811: ion transport	2.24E-02
118	GO:0009407: toxin catabolic process	2.24E-02
119	GO:0048527: lateral root development	2.32E-02
120	GO:0010043: response to zinc ion	2.32E-02
121	GO:0007568: aging	2.32E-02
122	GO:0009744: response to sucrose	2.97E-02
123	GO:0009636: response to toxic substance	3.23E-02
124	GO:0006855: drug transmembrane transport	3.31E-02
125	GO:0031347: regulation of defense response	3.40E-02
126	GO:0006812: cation transport	3.49E-02
127	GO:0009664: plant-type cell wall organization	3.49E-02
128	GO:0009846: pollen germination	3.49E-02
129	GO:0006486: protein glycosylation	3.67E-02
130	GO:0006813: potassium ion transport	3.67E-02
131	GO:0006857: oligopeptide transport	3.85E-02
132	GO:0006096: glycolytic process	4.13E-02
133	GO:0048316: seed development	4.23E-02
134	GO:0050832: defense response to fungus	4.42E-02
135	GO:0042545: cell wall modification	4.62E-02
136	GO:0006508: proteolysis	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0047782: coniferin beta-glucosidase activity	0.00E+00
2	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
3	GO:0003796: lysozyme activity	0.00E+00
4	GO:0020037: heme binding	7.10E-11
5	GO:0004601: peroxidase activity	2.79E-07
6	GO:0004617: phosphoglycerate dehydrogenase activity	9.18E-07
7	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.92E-05
8	GO:0019825: oxygen binding	4.16E-05
9	GO:0005506: iron ion binding	1.06E-04
10	GO:0004048: anthranilate phosphoribosyltransferase activity	1.35E-04
11	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	1.35E-04
12	GO:0047760: butyrate-CoA ligase activity	1.35E-04
13	GO:0004476: mannose-6-phosphate isomerase activity	1.35E-04
14	GO:0090448: glucosinolate:proton symporter activity	1.35E-04
15	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.35E-04
16	GO:0004333: fumarate hydratase activity	1.35E-04
17	GO:0003987: acetate-CoA ligase activity	1.35E-04
18	GO:0046906: tetrapyrrole binding	1.35E-04
19	GO:0004568: chitinase activity	2.00E-04
20	GO:0047517: 1,4-beta-D-xylan synthase activity	3.11E-04
21	GO:0019172: glyoxalase III activity	3.11E-04
22	GO:0008517: folic acid transporter activity	3.11E-04
23	GO:0008422: beta-glucosidase activity	3.16E-04
24	GO:0051287: NAD binding	5.02E-04
25	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.13E-04
26	GO:0004497: monooxygenase activity	7.07E-04
27	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.34E-04
28	GO:0004659: prenyltransferase activity	9.73E-04
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.73E-04
30	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.05E-03
31	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.21E-03
32	GO:0005496: steroid binding	1.23E-03
33	GO:0016791: phosphatase activity	1.38E-03
34	GO:0016208: AMP binding	1.51E-03
35	GO:0004866: endopeptidase inhibitor activity	1.51E-03
36	GO:0008200: ion channel inhibitor activity	1.51E-03
37	GO:0016597: amino acid binding	1.56E-03
38	GO:0102483: scopolin beta-glucosidase activity	1.93E-03
39	GO:0004721: phosphoprotein phosphatase activity	1.93E-03
40	GO:0008289: lipid binding	2.09E-03
41	GO:0004034: aldose 1-epimerase activity	2.46E-03
42	GO:0015288: porin activity	2.46E-03
43	GO:0030145: manganese ion binding	2.46E-03
44	GO:0008308: voltage-gated anion channel activity	2.81E-03
45	GO:0071949: FAD binding	3.17E-03
46	GO:0004743: pyruvate kinase activity	3.55E-03
47	GO:0030955: potassium ion binding	3.55E-03
48	GO:0016844: strictosidine synthase activity	3.55E-03
49	GO:0008559: xenobiotic-transporting ATPase activity	4.36E-03
50	GO:0045735: nutrient reservoir activity	5.50E-03
51	GO:0008083: growth factor activity	5.68E-03
52	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.68E-03
53	GO:0005217: intracellular ligand-gated ion channel activity	6.14E-03
54	GO:0008061: chitin binding	6.14E-03
55	GO:0004970: ionotropic glutamate receptor activity	6.14E-03
56	GO:0004190: aspartic-type endopeptidase activity	6.14E-03
57	GO:0004867: serine-type endopeptidase inhibitor activity	6.14E-03
58	GO:0004725: protein tyrosine phosphatase activity	6.62E-03
59	GO:0001046: core promoter sequence-specific DNA binding	7.11E-03
60	GO:0008134: transcription factor binding	7.11E-03
61	GO:0004252: serine-type endopeptidase activity	9.20E-03
62	GO:0008810: cellulase activity	9.21E-03
63	GO:0005451: monovalent cation:proton antiporter activity	1.09E-02
64	GO:0005199: structural constituent of cell wall	1.15E-02
65	GO:0015299: solute:proton antiporter activity	1.21E-02
66	GO:0010181: FMN binding	1.21E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	1.21E-02
68	GO:0016853: isomerase activity	1.21E-02
69	GO:0043565: sequence-specific DNA binding	1.33E-02
70	GO:0015385: sodium:proton antiporter activity	1.46E-02
71	GO:0046872: metal ion binding	1.52E-02
72	GO:0000287: magnesium ion binding	1.74E-02
73	GO:0030246: carbohydrate binding	1.99E-02
74	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.32E-02
75	GO:0003993: acid phosphatase activity	2.56E-02
76	GO:0004364: glutathione transferase activity	2.88E-02
77	GO:0004722: protein serine/threonine phosphatase activity	2.90E-02
78	GO:0044212: transcription regulatory region DNA binding	3.31E-02
79	GO:0009055: electron carrier activity	3.49E-02
80	GO:0045330: aspartyl esterase activity	3.95E-02
81	GO:0008234: cysteine-type peptidase activity	3.95E-02
82	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.41E-02
83	GO:0030599: pectinesterase activity	4.52E-02
84	GO:0015035: protein disulfide oxidoreductase activity	4.81E-02
85	GO:0016746: transferase activity, transferring acyl groups	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0005576: extracellular region	1.22E-08
2	GO:0005618: cell wall	1.04E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	1.35E-04
4	GO:0045239: tricarboxylic acid cycle enzyme complex	1.35E-04
5	GO:0009506: plasmodesma	2.91E-04
6	GO:0009530: primary cell wall	5.13E-04
7	GO:0005774: vacuolar membrane	1.96E-03
8	GO:0005615: extracellular space	2.03E-03
9	GO:0009986: cell surface	2.12E-03
10	GO:0005886: plasma membrane	2.38E-03
11	GO:0000325: plant-type vacuole	2.46E-03
12	GO:0046930: pore complex	2.81E-03
13	GO:0017119: Golgi transport complex	3.95E-03
14	GO:0030176: integral component of endoplasmic reticulum membrane	6.14E-03
15	GO:0048046: apoplast	6.89E-03
16	GO:0005741: mitochondrial outer membrane	8.14E-03
17	GO:0016020: membrane	1.03E-02
18	GO:0016021: integral component of membrane	1.13E-02
19	GO:0005770: late endosome	1.15E-02
20	GO:0009505: plant-type cell wall	1.24E-02
21	GO:0031965: nuclear membrane	1.27E-02
22	GO:0005773: vacuole	1.43E-02
23	GO:0071944: cell periphery	1.46E-02
24	GO:0009707: chloroplast outer membrane	2.09E-02
25	GO:0031969: chloroplast membrane	2.21E-02
26	GO:0031966: mitochondrial membrane	3.49E-02
27	GO:0000502: proteasome complex	3.67E-02
28	GO:0005635: nuclear envelope	3.85E-02
29	GO:0016607: nuclear speck	4.23E-02
30	GO:0009536: plastid	4.25E-02